Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1696	279.3	15874187	97.8%	15524954	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,185,017	Δ1 bp	coding (38/339 nt)	b2107 →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,185,014	0	T	.	100.0%	1029.6 / NA	226	coding (35/339 nt)	b2107	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (117/109); total (117/109)

Only 100 of 247 total aligned reads displayed.

TATTGTATGGCAGGAAAGATATGCGACTGATATTACAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGCTTTTGCTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAGTATGAGTTAAGTAGT  >  NC_000913/2184922‑2185102

tatTGTATGGCAGGAATGATATGCGACTGATATTACAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAATATGTTGCTGGGTGCGCt                                                                                          >  2:7016118/1‑93 (MQ=255)

gatTGTATGGCAGGAAAGATATGCGTCTGATATTACAGATCCCCAAAGTGGAGAGTTTATGGCCATTAAAAATTAGATGTTGCTTGGTGAGCt                                                                                          >  2:6754175/2‑93 (MQ=255)

 atTGTATGGCAGGAAAGATATGCGACTGATATTACAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGCtt                                                                                         >  1:2870689/1‑93 (MQ=255)

  ttGTATGGCAGGAAAGATATGCGACTGATATTACAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGCttt                                                                                        >  2:6116996/1‑93 (MQ=255)

  ttGTATGGCAGGAAAGATATGCGACTGATATTACAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGCttt                                                                                        <  1:3512536/93‑1 (MQ=255)

  ttGTATGGCAGGAAAGATATGCGACTGATATTACAGATCCCCAAAGTGGAGAGTTCATGACCATTAAAAATAAGATGTTGCTGGGTGCGCttt                                                                                        <  1:5127818/93‑1 (MQ=255)

    gTATGGCAGGAAAGATATGCGACTGATATTACAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGCtttgc                                                                                      <  1:2779846/93‑3 (MQ=255)

      aTGGCAGGAAAGATATGCGACTGATATTACAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGCtttgctg                                                                                    <  2:3341223/93‑5 (MQ=255)

      aTGGCAGGAAAGATATGCGACTGATATTACAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGCtttgctg                                                                                    <  2:3597468/93‑5 (MQ=255)

            ggAAAGATATGCGACTGATATTACAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTGCTGGTTAcc                                                                             >  2:3469320/1‑93 (MQ=255)

            ggAAAGATATGCGACTGATATTACAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTGCTGGTTAcc                                                                             >  2:1392439/1‑93 (MQ=255)

             gAAAGATATGCGACTGATATTACAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTGCTGGTTACCa                                                                            >  2:7754861/1‑93 (MQ=255)

              aaaGATATGCGACTGATATTACAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTGCTGGTTACCAg                                                                           <  1:5359709/93‑1 (MQ=255)

              aaaGATATGCGACTGATATTACAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTGCTGGTTACCAg                                                                           <  1:3005797/93‑1 (MQ=255)

               aaGATATGCGACTGATATTACAGATCACGAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGGTGGGTGCGC‑TTTGCTGGTTACCAGt                                                                          <  1:1326018/93‑1 (MQ=255)

                   tatGCGACTGATATTACAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTgccg                                                                      >  1:595722/1‑93 (MQ=255)

                   tatGCGACTGATATTACAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTgccg                                                                      >  2:7250918/1‑93 (MQ=255)

                     tGCGACTGATATTACAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTgccgcc                                                                    >  1:1023735/1‑93 (MQ=255)

                     tGCGACTGATATTACAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTgccgcc                                                                    <  1:3471092/93‑1 (MQ=255)

                     tGCGACTGATATTACAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTgccgcc                                                                    >  2:7689066/1‑93 (MQ=255)

                     tGCGACTGATATTACAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTgccgcc                                                                    <  1:1646232/93‑1 (MQ=255)

                      gCGACTGATATTACAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCt                                                                   <  2:4205161/93‑1 (MQ=255)

                       cGACTGATATTACAGATCCCCACAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCTg                                                                  <  1:520312/93‑1 (MQ=255)

                        gACTGATATTACAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCTgg                                                                 >  1:3707690/1‑93 (MQ=255)

                        gACTGATATTACAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCTgg                                                                 <  1:6446852/93‑1 (MQ=255)

                         aCTGATATTACAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCTggg                                                                >  2:5749273/1‑93 (MQ=255)

                         aCTGATATTACAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCTggg                                                                <  1:4229959/93‑1 (MQ=255)

                              tatTACAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCa                                                           >  2:4245499/1‑93 (MQ=255)

                              tatTACAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCa                                                           >  2:5401295/1‑93 (MQ=255)

                                ttACAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCAcc                                                         >  1:5442322/1‑93 (MQ=255)

                                 tACAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCACCa                                                        >  1:1770135/1‑93 (MQ=255)

                                  aCAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCACCAg                                                       >  2:3164740/1‑93 (MQ=255)

                                     gATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCa                                                    >  2:1108860/1‑93 (MQ=255)

                                     gATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCa                                                    >  1:5372029/1‑93 (MQ=255)

                                       tCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCAcc                                                  >  1:1928641/1‑93 (MQ=255)

                                          ccAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACcgcg                                               >  2:1158335/1‑93 (MQ=255)

                                           cAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCgg                                              >  2:2884854/1‑93 (MQ=255)

                                             aaGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGt                                            >  1:776124/1‑93 (MQ=255)

                                             aaGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGt                                            <  2:166302/93‑1 (MQ=255)

                                              aGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGtt                                           <  2:6545186/93‑1 (MQ=255)

                                                  gagaGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGAc                                       <  1:5742352/93‑1 (MQ=255)

                                                      gTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAAt                                   >  1:331509/1‑93 (MQ=255)

                                                      gTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAAt                                   >  2:7915169/1‑93 (MQ=255)

                                                      gTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAAt                                   >  2:3793107/1‑93 (MQ=255)

                                                       tttATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATa                                  >  2:21672/1‑93 (MQ=255)

                                                        ttATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATAc                                 >  2:4329718/1‑93 (MQ=255)

                                                        ttATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATAc                                 >  1:1226073/1‑93 (MQ=255)

                                                        ttATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATAc                                 <  1:5714458/93‑1 (MQ=255)

                                                        ttATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATAc                                 <  1:1828012/93‑1 (MQ=255)

                                                         tATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATAcc                                <  2:1547477/93‑1 (MQ=255)

                                                         tATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATAcc                                >  1:4292050/1‑93 (MQ=255)

                                                          aTGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCt                               <  1:5999207/93‑1 (MQ=255)

                                                           tGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTc                              <  1:1497005/93‑1 (MQ=255)

                                                           tGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTc                              <  2:2447595/93‑1 (MQ=255)

                                                           tGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTc                              <  2:2272150/93‑1 (MQ=255)

                                                           tGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTc                              <  2:6479790/93‑1 (MQ=255)

                                                            gACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCg                             <  2:748582/93‑1 (MQ=255)

                                                              ccATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCggg                           >  2:1243082/1‑93 (MQ=255)

                                                               cATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGa                          >  2:5018427/1‑93 (MQ=255)

                                                                aTTAAAAATAAGATGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGaa                         >  1:6884893/1‑93 (MQ=255)

                                                                aTTAAAAATAAGATGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGaa                         <  2:5929281/93‑1 (MQ=255)

                                                                aTTAAAAATAAGATGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGaa                         <  1:6962320/93‑1 (MQ=255)

                                                                aTTAAAAATAAGATGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGaa                         <  1:4815327/93‑1 (MQ=255)

                                                                aTTAAAAATAAGATGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGaa                         <  1:4074857/93‑1 (MQ=255)

                                                                aTTAAAAATAAGATGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGaa                         >  2:4066812/1‑93 (MQ=255)

                                                                 ttAAAAGTAAGATGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAAt                        <  2:4751524/93‑1 (MQ=255)

                                                                   aaaaaTAAGATGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAAttt                      <  2:5016603/93‑1 (MQ=255)

                                                                    aaaaTAAGATGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTc                     <  2:1987349/93‑1 (MQ=255)

                                                                    aaaaTAAGATGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTc                     >  2:7331145/1‑93 (MQ=255)

                                                                     aaaTAAGATGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCTTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCt                    <  2:6928431/93‑1 (MQ=255)

                                                                      aaTAAGATGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTa                   >  1:6531023/1‑93 (MQ=255)

                                                                       aTAAGATGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTaa                  <  2:6329238/93‑1 (MQ=255)

                                                                       aTAAGATGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTaa                  <  2:5299212/93‑1 (MQ=255)

                                                                       aTAAGATGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTaa                  <  1:7456531/93‑1 (MQ=255)

                                                                         aaGATGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAGt                >  2:2699138/1‑93 (MQ=255)

                                                                         aaGATGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAGt                <  1:6748297/93‑1 (MQ=255)

                                                                          aGATGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAGTa               <  1:3626364/93‑1 (MQ=255)

                                                                          aGATGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAGTa               >  1:212218/1‑93 (MQ=255)

                                                                           gATGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAGTAt              <  1:1149974/93‑1 (MQ=255)

                                                                           gATGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAGTAt              >  2:6029238/1‑93 (MQ=255)

                                                                             tGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAGTATGa            >  2:1945019/1‑93 (MQ=255)

                                                                             tGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAGTATGa            >  1:2358246/1‑93 (MQ=255)

                                                                             tGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAGTATGa            >  1:4474072/1‑93 (MQ=255)

                                                                             tGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAGTATGa            <  1:5076445/93‑1 (MQ=255)

                                                                             tGTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAGTATGa            <  1:669095/93‑1 (MQ=255)

                                                                              gTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAGTATGAg           <  1:13126/93‑1 (MQ=255)

                                                                              gTTGCTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAGTATGAg           <  1:487743/93‑1 (MQ=255)

                                                                               ttGCTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAGTATGAGt          <  1:93046/93‑1 (MQ=255)

                                                                               ttGCTGGGTGCGC‑TTGCCTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAGTATGAGt          <  1:4287502/93‑1 (MQ=255)

                                                                                tGCTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAGTATGAGtt         <  1:830351/93‑1 (MQ=255)

                                                                                  cTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAGTATGAGTTaa       <  1:5536249/93‑1 (MQ=255)

                                                                                  cTGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAGTATGAGTTaa       <  1:231270/93‑1 (MQ=255)

                                                                                   tGGGTGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAGTATGAGTTAag      >  1:326669/1‑93 (MQ=255)

                                                                                     ggTGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAGTATGAGTTAagca    >  2:6701494/1‑91 (MQ=255)

                                                                                     ggTGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAGTATGAGTTAagca    <  1:4701438/93‑3 (MQ=255)

                                                                                     ggTGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAGTATGAGTTAagca    >  2:7432208/1‑91 (MQ=255)

                                                                                     ggTGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAGTATGAGTTAagca    <  2:7842997/93‑3 (MQ=255)

                                                                                     ggTGCGC‑TTGGCTGGTTACCATTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAGTATGAGTTAagca    <  2:1419393/93‑3 (MQ=255)

                                                                                       tGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAGTATGAGTTAagcagt  <  2:1843032/93‑1 (MQ=255)

                                                                                       tGCGC‑TTTGCTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAGTATGAGTTAagcagt  <  2:4256813/93‑1 (MQ=255)

TATTGTATGGCAGGAAAGATATGCGACTGATATTACAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGCTTTTGCTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAGTATGAGTTAAGTAGT  >  NC_000913/2184922‑2185102

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TTGTATGGCAGGAAAGATATGCGACTGATATTACAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGCTTTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAGTATGAGTTAAGTAGTTTCATTG  >  NC_000913/2184924‑2185109

TTGTATGGCAGGAAAGATATGCGACTGATATTACAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGCTTTG                                                                                               <  SRR4302543.6849467/94‑1 (MQ=60)

TTGTATGGCAGGAAAGATATGCGACTGATATTACAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGCTTTG                                                                                               <  SRR4302543.3543915/94‑1 (MQ=60)

TTGTATGGCAGGAAAGATATGCGACTGATATTACAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGCTTTG                                                                                               <  SRR4302543.5174167/94‑1 (MQ=60)

TTGTATGGCAGGAAAGATATGCGACTGATATTACAGATCCCCAAAGTGGAGAGTTCATGACCATTAAAAATAAGATGTTGCTGGGTGCGCTTTG                                                                                               <  SRR4302543.5174166/94‑1 (MQ=60)

  GTATGGCAGGAAAGATATGCGACTGATATTACAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CT                                                                                           <  SRR4302543.2805172/94‑1 (MQ=60)

  GTATGGCAGGAAAGATATGCGACTGATATTACAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CT                                                                                           <  SRR4302543.2805173/94‑1 (MQ=60)

   TATGGCAGGAAAGATATGCGACTGATATTACAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTG                                                                                          >  SRR4302543.7021168/1‑94 (MQ=60)

       GCAGGAAAGATATGCGACTGATATTACAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTA                                                                                      <  SRR4302543.2900249/94‑1 (MQ=60)

          GGAAAGATATGCGACTGATATTACAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCA                                                                                   >  SRR4302543.4648017/1‑94 (MQ=60)

           GAAAGATATGCGACTGATATTACAGGTCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAG                                                                                  >  SRR4302543.1898060/1‑94 (MQ=60)

           GAAAGATATGCGACTGATATTACAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAG                                                                                  >  SRR4302543.5467799/1‑94 (MQ=60)

            AAAGATATGCGACTGATATTACAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGT                                                                                 >  SRR4302543.5403579/1‑94 (MQ=60)

            AAAGATATGCGACTGATATTACAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGT                                                                                 <  SRR4302543.5408214/94‑1 (MQ=60)

            AAAGATATGCGACTGATATTACAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGT                                                                                 <  SRR4302543.3033030/94‑1 (MQ=60)

            AAAGATATGCGACTGATATTACAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGT                                                                                 <  SRR4302543.6611767/94‑1 (MQ=60)

             AAGATATGCGACTGATATTACAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTG                                                                                <  SRR4302543.1337793/94‑1 (MQ=60)

             AAGATATGCGACTGATATTACAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTG                                                                                <  SRR4302543.3378651/94‑1 (MQ=60)

             AAGATATGCGACTGATATTACAGATCACGAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGGTGGGTGCGC‑TTTG‑CTGGTTACCAGTG                                                                                <  SRR4302543.1337794/94‑1 (MQ=60)

              AGATATGCGACTGATATTACAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGC                                                                               >  SRR4302543.1281680/1‑94 (MQ=60)

                ATATGCGACTGATATTACAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCG                                                                             >  SRR4302543.601187/1‑94 (MQ=60)

                 TATGCGACTGATATTACAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGC                                                                            <  SRR4302543.476826/94‑1 (MQ=60)

                  ATGCGACTGATATTACAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCC                                                                           >  SRR4302543.1032795/1‑94 (MQ=60)

                  ATGCGACTGATATTACAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCC                                                                           >  SRR4302543.2179184/1‑94 (MQ=60)

                   TGCGACTGATATTACAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCT                                                                          <  SRR4302543.3502180/94‑1 (MQ=60)

                   TGCGACTGATATTACAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCT                                                                          <  SRR4302543.1660947/94‑1 (MQ=60)

                     CGACTGATATTACAGATCCCCACAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGG                                                                        <  SRR4302543.525143/94‑1 (MQ=60)

                     CGACTGATATTACAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGG                                                                        <  SRR4302543.2765171/94‑1 (MQ=60)

                     CGACTGATATTACAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGG                                                                        >  SRR4302543.3740286/1‑94 (MQ=60)

                      GACTGATATTACAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGG                                                                       <  SRR4302543.6507592/94‑1 (MQ=60)

                      GACTGATATTACAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGG                                                                       >  SRR4302543.1887955/1‑94 (MQ=60)

                       ACTGATATTACAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGC                                                                      <  SRR4302543.4268332/94‑1 (MQ=60)

                         TGATATTACAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCG                                                                    >  SRR4302543.7847246/1‑94 (MQ=60)

                         TGATATTACAGATCCCCAAAGTGGAGAGGTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCG                                                                    >  SRR4302543.5470382/1‑94 (MQ=60)

                          GATATTACAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGC                                                                   >  SRR4302543.6675664/1‑94 (MQ=60)

                            TATTACAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCAC                                                                 >  SRR4302543.988840/1‑94 (MQ=60)

                            TATTACAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCAC                                                                 <  SRR4302543.4864580/94‑1 (MQ=60)

                            TATTACAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCAC                                                                 <  SRR4302543.5773680/94‑1 (MQ=60)

                             ATTACAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACC                                                                >  SRR4302543.5491724/1‑94 (MQ=60)

                             ATTACAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACC                                                                <  SRR4302543.3563399/94‑1 (MQ=60)

                              TTACAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCA                                                               >  SRR4302543.1785962/1‑94 (MQ=60)

                              TTACAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGCGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCA                                                               >  SRR4302543.6870391/1‑94 (MQ=60)

                                ACAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGC                                                             >  SRR4302543.4286882/1‑94 (MQ=60)

                                 CAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCC                                                            <  SRR4302543.151048/94‑1 (MQ=60)

                                  AGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCA                                                           >  SRR4302543.5420677/1‑94 (MQ=60)

                                  AGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCA                                                           >  SRR4302543.3711148/1‑94 (MQ=60)

                                  AGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCA                                                           >  SRR4302543.5420678/1‑94 (MQ=60)

                                   GATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCAC                                                          <  SRR4302543.4327666/94‑1 (MQ=60)

                                   GATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCAC                                                          <  SRR4302543.3513409/94‑1 (MQ=60)

                                    ATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACC                                                         >  SRR4302543.1946006/1‑94 (MQ=60)

                                     TCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCG                                                        >  SRR4302543.5640077/1‑94 (MQ=60)

                                     TCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCG                                                        <  SRR4302543.5558779/94‑1 (MQ=60)

                                         CAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGG                                                    <  SRR4302543.615612/94‑1 (MQ=60)

                                         CAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTCCCGCCTGGCCCGCACCAGCCACCGCGGG                                                    >  SRR4302543.2009649/1‑94 (MQ=60)

                                          AAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGT                                                   <  SRR4302543.3370978/94‑1 (MQ=60)

                                          AAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGT                                                   >  SRR4302543.782944/1‑94 (MQ=60)

                                           AAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTT                                                  <  SRR4302543.5113487/94‑1 (MQ=60)

                                            AGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTC                                                 <  SRR4302543.1308204/94‑1 (MQ=60)

                                               GGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGAC                                              <  SRR4302543.7585018/94‑1 (MQ=60)

                                               GGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGAC                                              >  SRR4302543.2344138/1‑94 (MQ=60)

                                                GAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACC                                             <  SRR4302543.5794702/94‑1 (MQ=60)

                                                  GAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAA                                           <  SRR4302543.2849855/94‑1 (MQ=60)

                                                  GAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAA                                           >  SRR4302543.5138952/1‑94 (MQ=60)

                                                   AGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAAT                                          >  SRR4302543.334550/1‑94 (MQ=60)

                                                    GTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATA                                         >  SRR4302543.6012449/1‑94 (MQ=60)

                                                     TTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATAC                                        >  SRR4302543.1237090/1‑94 (MQ=60)

                                                     TTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATAC                                        <  SRR4302543.3313267/94‑1 (MQ=60)

                                                     TTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGACGCACCAGCCACCGCGGGTTCGACCAATAC                                        <  SRR4302543.1789121/94‑1 (MQ=60)

                                                      TTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACC                                       <  SRR4302543.5766596/94‑1 (MQ=60)

                                                      TTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACC                                       >  SRR4302543.4844149/1‑94 (MQ=60)

                                                      TTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACC                                       >  SRR4302543.3590575/1‑94 (MQ=60)

                                                      TTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACC                                       >  SRR4302543.4331076/1‑94 (MQ=60)

                                                      TTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACC                                       <  SRR4302543.1844428/94‑1 (MQ=60)

                                                      TTATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACC                                       >  SRR4302543.7134323/1‑94 (MQ=60)

                                                        ATGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTC                                     <  SRR4302543.6054290/94‑1 (MQ=60)

                                                         TGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCG                                    <  SRR4302543.1510473/94‑1 (MQ=60)

                                                         TGACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCG                                    <  SRR4302543.7424962/94‑1 (MQ=60)

                                                           gccgttgagcatcAGATGTTGCTAGGTGCGC‑TTTG‑CTGGTTGCCGGTGCCGCCTGGGCCGCACCAGCCTCCGCGGGTTCGCCAACTACCTCGGG                                  <  SRR4302543.7093793/81‑1 (MQ=38)

                                                           ACCATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTAACAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCCGG                                  >  SRR4302543.6171515/1‑94 (MQ=60)

                                                             CATTAAAAATAAGATGTTGCTGGTTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAT                                >  SRR4302543.1401085/1‑94 (MQ=60)

                                                             CATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAA                                >  SRR4302543.6949658/1‑94 (MQ=60)

                                                              ATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAAT                               <  SRR4302543.4859296/94‑1 (MQ=60)

                                                              ATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAAT                               >  SRR4302543.5833106/1‑94 (MQ=60)

                                                              ATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAAT                               <  SRR4302543.7027832/94‑1 (MQ=60)

                                                              ATTAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAAT                               <  SRR4302543.4111373/94‑1 (MQ=60)

                                                                TAAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTT                             <  SRR4302543.2944874/94‑1 (MQ=60)

                                                                 AAAAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTC                            >  SRR4302543.1676026/1‑94 (MQ=60)

                                                                   AAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTA                          >  SRR4302543.3233881/1‑94 (MQ=60)

                                                                   AAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTA                          >  SRR4302543.7986855/1‑94 (MQ=60)

                                                                   AAATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTA                          >  SRR4302543.6592511/1‑94 (MQ=60)

                                                                     ATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAG                        <  SRR4302543.7527963/94‑1 (MQ=60)

                                                                     ATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAG                        <  SRR4302543.1686796/94‑1 (MQ=60)

                                                                     ATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAG                        >  SRR4302543.5092672/1‑94 (MQ=60)

                                                                     ATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAG                        >  SRR4302543.6805637/1‑94 (MQ=60)

                                                                     ATAAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAG                        <  SRR4302543.1200765/94‑1 (MQ=60)

                                                                       AAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAGTA                      >  SRR4302543.214030/1‑94 (MQ=60)

                                                                       AAGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAGTA                      <  SRR4302543.6812018/94‑1 (MQ=60)

                                                                        AGATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAGTAT                     <  SRR4302543.3658303/94‑1 (MQ=60)

                                                                         GATGTTGCTGTGTGCGC‑TGTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAGTATG                    <  SRR4302543.1160455/94‑1 (MQ=60)

                                                                         GATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAGTATG                    <  SRR4302543.1160456/94‑1 (MQ=60)

                                                                          ATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAGTATGA                   >  SRR4302543.5599601/1‑94 (MQ=60)

                                                                          ATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAGTATGA                   >  SRR4302543.2379631/1‑94 (MQ=60)

                                                                          ATGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAGTATGA                   >  SRR4302543.4514674/1‑94 (MQ=60)

                                                                           TGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAGTATGAG                  <  SRR4302543.5122503/94‑1 (MQ=60)

                                                                           TGTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAGTATGAG                  <  SRR4302543.675261/94‑1 (MQ=60)

                                                                            GTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAGTATGAGT                 <  SRR4302543.492252/94‑1 (MQ=60)

                                                                            GTTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAGTATGAGT                 <  SRR4302543.13243/94‑1 (MQ=60)

                                                                             TTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAGTATGAGTT                <  SRR4302543.93914/94‑1 (MQ=60)

                                                                             TTGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAGTATGAGTT                <  SRR4302543.4326270/94‑1 (MQ=60)

                                                                             TTGCTGGGTGCGC‑‑TTGCCTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAGTATGAGTT                <  SRR4302543.4326470/94‑1 (MQ=60)

                                                                              TGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAGTATGAGTTA               <  SRR4302543.837668/94‑1 (MQ=60)

                                                                              TGCTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAGTATGAGTTA               <  SRR4302543.837667/94‑1 (MQ=60)

                                                                                CTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAGTATGAGTTAAG             >  SRR4302543.4106440/1‑94 (MQ=60)

                                                                                CTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAGTATGAGTTAAG             <  SRR4302543.233267/94‑1 (MQ=60)

                                                                                CTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAGTATGAGTTAAG             <  SRR4302543.3987572/94‑1 (MQ=60)

                                                                                CTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAGTATGAGTTAAG             >  SRR4302543.329632/1‑94 (MQ=60)

                                                                                CTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAGTATGAGTTAAG             <  SRR4302543.2211528/94‑1 (MQ=60)

                                                                                CTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAGTATGAGTTAAG             >  SRR4302543.5192082/1‑94 (MQ=60)

                                                                                CTGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAGTATGAGTTAAG             <  SRR4302543.5586574/94‑1 (MQ=60)

                                                                                 TGGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAGTATGAGTTAAGC            >  SRR4302543.6577274/1‑94 (MQ=60)

                                                                                  GGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAGTATGAGTTAAGCA           >  SRR4302543.4178286/1‑94 (MQ=60)

                                                                                  GGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAGTATGAGTTAAGCA           <  SRR4302543.1451443/94‑1 (MQ=60)

                                                                                  GGGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAGTATGAGTTAAGCA           <  SRR4302543.44946/94‑1 (MQ=60)

                                                                                   GGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAGTATGAGTTAAGCAG          <  SRR4302543.5991437/94‑1 (MQ=60)

                                                                                   GGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAGTATGAGTTAAGCAG          <  SRR4302543.4472386/94‑1 (MQ=60)

                                                                                   GGTGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAGTATGAGTTAAGCAG          <  SRR4302543.4744383/94‑1 (MQ=60)

                                                                                     TGCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAGTATGAGTTAAGCAGTT        >  SRR4302543.763303/1‑94 (MQ=60)

                                                                                      GCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAGTATGAGTTAAGCAGTTT       >  SRR4302543.4298238/1‑94 (MQ=60)

                                                                                      GCGC‑TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAGTATGAGTTAAGCAGTTT       <  SRR4302543.5943790/94‑1 (MQ=60)

                                                                                         gcTTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAGTATGAGTTAAGCAGTTTCA     >  SRR4302543.2384052/3‑94 (MQ=60)

                                                                                          CTTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAGTATGAGTTAAGCAGTTTCAT    <  SRR4302543.6255776/94‑1 (MQ=60)

                                                                                          CTTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAGTATGAGTTAAGCAGTTTCAT    >  SRR4302543.5093149/1‑94 (MQ=60)

                                                                                           TTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAGTATGAGTTAAGCAGTTTCATT   <  SRR4302543.7872292/94‑1 (MQ=60)

                                                                                            TTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAGTATGAGTTAAGCAGTTTCATTG  <  SRR4302543.2205744/94‑1 (MQ=60)

TTGTATGGCAGGAAAGATATGCGACTGATATTACAGATCCCCAAAGTGGAGAGTTTATGACCATTAAAAATAAGATGTTGCTGGGTGCGCTTTTG‑CTGGTTACCAGTGCCGCCTGGGCCGCACCAGCCACCGCGGGTTCGACCAATACCTCGGGAATTTCTAAGTATGAGTTAAGTAGTTTCATTG  >  NC_000913/2184924‑2185109

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`