Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1696	279.3	15874187	97.8%	15524954	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,264,802	T→C	F180L (TTT→CTT)	yeiQ →	putative oxidoreductase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,264,802	0	T	C	99.6%	714.3 / NA	227	F180L (TTT→CTT)	yeiQ	putative oxidoreductase
Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (112/114); minor base A (0/1); total (112/115)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 234 total aligned reads displayed.

ACGATCTACAAACCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGTTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAAACGTTCGCCAGAA  >  NC_000913/2264713‑2264891

aCGATCTACAAACCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTa                                                                                        >  1:4385066/1‑93 (MQ=255)

aCGATCTACAAACCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTa                                                                                        <  2:6967649/93‑1 (MQ=255)

aCGATCTACAAACCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTa                                                                                        <  2:4267578/93‑1 (MQ=255)

 cGATCTACAAACCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTAc                                                                                       <  1:6969433/93‑1 (MQ=255)

  gATCTACAACCCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTAcc                                                                                      <  2:23737/93‑1 (MQ=255)

   aTCTACAAACCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCg                                                                                     <  2:7391168/93‑1 (MQ=255)

   aTCTACAAACCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCg                                                                                     >  2:218651/1‑93 (MQ=255)

    tCTACAAACCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGt                                                                                    >  1:2220564/1‑93 (MQ=255)

     cTACAAACCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTg                                                                                   >  1:4533242/1‑93 (MQ=255)

     cTACAAACCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTg                                                                                   >  2:5465761/1‑93 (MQ=255)

     cTACAAACCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTg                                                                                   >  1:4602373/1‑93 (MQ=255)

      tACAAACCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGc                                                                                  >  1:136361/1‑93 (MQ=255)

       aCAAACCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGct                                                                                 <  1:3983005/93‑1 (MQ=255)

       aCAAACCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGct                                                                                 >  1:4908620/1‑93 (MQ=255)

         aaaCCCCTGAAGAACCTCACTCCGCTCCGGCTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGctct                                                                               <  2:1669472/93‑1 (MQ=255)

          aaCCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCtctc                                                                              <  2:2060716/93‑1 (MQ=255)

          aaCCCCTGAAGAACCTCACTCCGCACCGGGAGTTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCtctc                                                                              >  1:63700/1‑93 (MQ=255)

           aCCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTcc                                                                             <  2:2230833/93‑1 (MQ=255)

           aCCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTcc                                                                             <  1:4020672/93‑1 (MQ=255)

                tGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGa                                                                        <  2:2558751/93‑1 (MQ=255)

                tGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGa                                                                        <  2:7301270/93‑1 (MQ=255)

                tGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGa                                                                        >  1:1781203/1‑93 (MQ=255)

                tGAAGAACCTCACTCCGCACCGGGCATTCTCGCCGAACCACTGATACCCCGCCGTGTGCGCGGCCTTACACCGCTTACCGTGCCCCCCTCCgc                                                                        >  2:1317864/1‑92 (MQ=255)

                 gaagaaCCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGGGCGGCCTTACACCGCTTACCGTGCTCTCCTGCggc                                                                       >  2:1862623/1‑91 (MQ=255)

                  aaaaaCCTCACTCCGCCCCGAGTATTCTCGTCGAAGCATTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACa                                                                      <  1:5448912/90‑1 (MQ=255)

                    gaaCCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAat                                                                    >  2:3773904/1‑93 (MQ=255)

                    gaaCCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAat                                                                    <  1:4893990/93‑1 (MQ=255)

                     aaCCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAata                                                                   <  2:4387996/93‑1 (MQ=255)

                       ccTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATAtt                                                                 <  2:2936433/93‑1 (MQ=255)

                       ccTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATAtt                                                                 >  1:2840918/1‑93 (MQ=255)

                        cTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTc                                                                <  2:1185304/93‑1 (MQ=255)

                        cTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTc                                                                <  2:5379458/93‑1 (MQ=255)

                         tCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTcc                                                               >  1:1121791/1‑93 (MQ=255)

                         tCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTcc                                                               >  2:7140243/1‑93 (MQ=255)

                         tCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTcc                                                               <  2:2408225/93‑1 (MQ=255)

                          cACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTccc                                                              <  2:2141502/93‑1 (MQ=255)

                           aCTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCg                                                             >  2:4608828/1‑93 (MQ=255)

                            cTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGa                                                            >  1:7245013/1‑93 (MQ=255)

                             tCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGAc                                                           >  1:5716250/1‑93 (MQ=255)

                               cGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACaa                                                         <  2:616172/93‑1 (MQ=255)

                                gCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAAt                                                        <  1:4874440/93‑1 (MQ=255)

                                 cACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTCCCGTGCTCTCCTGCGCCAATATTCCCGGCAATg                                                       >  1:51639/1‑93 (MQ=255)

                                 cACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATg                                                       <  2:2656413/93‑1 (MQ=255)

                                  aCCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATgg                                                      >  1:7156201/1‑93 (MQ=255)

                                   ccGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGt                                                     >  1:5400292/1‑93 (MQ=255)

                                     gggTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCa                                                   >  1:2724869/1‑93 (MQ=255)

                                     gggTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCa                                                   <  1:7733039/93‑1 (MQ=255)

                                      ggTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCAt                                                  >  2:2756294/1‑93 (MQ=255)

                                        tATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCAtgt                                                >  1:1640078/1‑93 (MQ=255)

                                         aTTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCAtgtg                                               <  1:5739961/93‑1 (MQ=255)

                                           tctcGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATgtggt                                             <  1:6578616/93‑1 (MQ=255)

                                           tctcGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATgtggt                                             <  1:3382679/93‑1 (MQ=255)

                                             tcgtcgAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGa                                           >  1:5476425/1‑93 (MQ=255)

                                             tcgtcgAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGa                                           <  1:479090/93‑1 (MQ=255)

                                               gtcgAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGaaa                                         >  2:6206928/1‑93 (MQ=255)

                                                tcgAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGaaaa                                        >  2:7842976/1‑93 (MQ=255)

                                                 cgAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGaaaaa                                       <  1:7881248/93‑1 (MQ=255)

                                                 cgAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGaaaaa                                       <  1:264013/93‑1 (MQ=255)

                                                 cgAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGaaaaa                                       <  1:2855047/93‑1 (MQ=255)

                                                  gaagaaCTGAAACGCCGCCGTGAGCGCGGCCTTAAAACGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAacac                                      >  1:4628619/1‑93 (MQ=255)

                                                      cACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTTCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCgg                                  <  1:593699/93‑1 (MQ=255)

                                                      cACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCgg                                  <  1:1035871/93‑1 (MQ=255)

                                                       ccTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGt                                 <  1:1851458/92‑1 (MQ=255)

                                                       ccTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGt                                 <  2:1787533/92‑1 (MQ=255)

                                                       aCTGAACCGCCGCCGTGACCGCGGCCTTACCCCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGt                                 <  2:3599958/93‑1 (MQ=255)

                                                       aCTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGTCAATATTCCCGACAATGGTCGTGTGGTGAAAAACGCGGt                                 <  2:3525375/93‑1 (MQ=255)

                                                       aCTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGt                                 <  2:3381669/93‑1 (MQ=255)

                                                         tGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGCAAAACGCGGTGc                               >  2:6803974/1‑93 (MQ=255)

                                                         tGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGc                               >  1:4055326/1‑93 (MQ=255)

                                                          gAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCt                              <  2:3213334/93‑1 (MQ=255)

                                                          aaaaCGCCGCCGGGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCt                              <  1:6920348/92‑1 (MQ=255)

                                                           aaaCGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTg                             <  2:5841495/93‑1 (MQ=255)

                                                             aCGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTggg                           <  2:1286301/93‑1 (MQ=255)

                                                             aCGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTgga                           >  1:1177477/1‑92 (MQ=255)

                                                              cgccgcCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGa                          <  1:5194968/93‑1 (MQ=255)

                                                               cccgccgTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGaa                         <  2:6729483/92‑1 (MQ=255)

                                                                ccggcgTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAAt                        <  1:1548553/93‑1 (MQ=255)

                                                                ccgccgTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAAt                        <  1:6730400/93‑1 (MQ=255)

                                                                 cgccgTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATg                       <  1:4462793/93‑1 (MQ=255)

                                                                   ccgTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGc                     <  1:1681083/93‑1 (MQ=255)

                                                                    cgTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCa                    <  2:1920228/93‑1 (MQ=255)

                                                                    cgTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCa                    >  1:5644644/1‑93 (MQ=255)

                                                                      tGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGa                  >  1:2350013/1‑93 (MQ=255)

                                                                      tGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGa                  >  1:1526186/1‑93 (MQ=255)

                                                                       gAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGaa                 <  1:201515/93‑1 (MQ=255)

                                                                        aGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGaaa                <  1:6030857/93‑1 (MQ=255)

                                                                          cgcgGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGaaaaa              <  2:2488527/93‑1 (MQ=255)

                                                                             ggCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAAACGt           <  2:3045934/93‑1 (MQ=255)

                                                                             ggCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAAACGt           <  2:3026897/93‑1 (MQ=255)

                                                                             ggCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAAACGt           >  1:6270372/1‑93 (MQ=255)

                                                                             ggCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAAACGt           <  1:3320790/93‑1 (MQ=255)

                                                                              gCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAAACGtt          <  2:5584590/93‑1 (MQ=255)

                                                                              gCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAAACGtt          >  1:7491659/1‑93 (MQ=255)

                                                                               ccTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAAACGTTc         <  2:894287/93‑1 (MQ=255)

                                                                                 ttACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAAACGTTCGc       >  2:3908241/1‑93 (MQ=255)

                                                                                  tACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAAACGTTCGcc      >  2:1400562/1‑93 (MQ=255)

                                                                                   acacCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAAACGTTCGCCa     <  1:2109890/93‑1 (MQ=255)

                                                                                   acacCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAAACGTTCGCCa     <  1:2993963/93‑1 (MQ=255)

                                                                                   acacCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAAACGTTCGCCa     <  2:1234761/93‑1 (MQ=255)

                                                                                     acCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAAACGTTCGCCAGa   >  1:6769345/1‑93 (MQ=255)

ACGATCTACAAACCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGTTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAAACGTTCGCCAGAA  >  NC_000913/2264713‑2264891

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TTCACGATCTACAAACCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGTTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAAACGTTCGCCAGAACTCG  >  NC_000913/2264710‑2264895

TTCACGATCTACAAACCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCT                                                                                              >  SRR4302543.3201641/1‑94 (MQ=60)

  CACGATCTACAAACCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTA                                                                                            >  SRR4302543.4424823/1‑94 (MQ=60)

   ACGATCTACAAACCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTAC                                                                                           <  SRR4302543.1646523/94‑1 (MQ=60)

    CGATCTACAAACCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACC                                                                                          <  SRR4302543.7035017/94‑1 (MQ=60)

      ATCTACAAACCCCTGAAGAACCTCACTCCGCACCGGGTGTTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGT                                                                                        <  SRR4302543.4932124/94‑1 (MQ=60)

      ATCTACAAACCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGT                                                                                        <  SRR4302543.183665/94‑1 (MQ=60)

      ATCTACAAACCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGT                                                                                        <  SRR4302543.183666/94‑1 (MQ=60)

      ATCTACAAACCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGT                                                                                        >  SRR4302543.5788574/1‑94 (MQ=60)

      ATCTACAAACCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGT                                                                                        >  SRR4302543.2233284/1‑94 (MQ=60)

      ATCTACAAACCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGT                                                                                        >  SRR4302543.2240599/1‑94 (MQ=60)

       TCTACAAACCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTG                                                                                       >  SRR4302543.4574509/1‑94 (MQ=60)

       TCTACAAACCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTG                                                                                       >  SRR4302543.4644184/1‑94 (MQ=60)

        CTACAAACCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGC                                                                                      >  SRR4302543.137563/1‑94 (MQ=60)

        CTACAAACCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGC                                                                                      >  SRR4302543.2192116/1‑94 (MQ=60)

         TACAAACCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCT                                                                                     >  SRR4302543.4953357/1‑94 (MQ=60)

          ACAAACCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTC                                                                                    >  SRR4302543.716183/1‑94 (MQ=60)

          ACAAACCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTC                                                                                    >  SRR4302543.7986952/1‑94 (MQ=60)

          ACAAACCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTC                                                                                    <  SRR4302543.4018335/94‑1 (MQ=60)

           CAAACCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCT                                                                                   >  SRR4302543.4272359/1‑94 (MQ=60)

            AAACCCCTGAAGAACCTCACTCCGCACCGGGAGTTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTC                                                                                  >  SRR4302543.64262/1‑94 (MQ=60)

              ACCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCT                                                                                <  SRR4302543.4056584/94‑1 (MQ=60)

               CCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTG                                                                               <  SRR4302543.645700/94‑1 (MQ=60)

               CCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTG                                                                               >  SRR4302543.7804413/1‑94 (MQ=60)

                 CCTGAAGAACCTCGCTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCG                                                                             <  SRR4302543.1199246/94‑1 (MQ=60)

                 CCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCG                                                                             >  SRR4302543.4613457/1‑94 (MQ=60)

                  CTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGA                                                                            >  SRR4302543.2034055/1‑94 (MQ=60)

                  CTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGA                                                                            >  SRR4302543.1797130/1‑94 (MQ=60)

                  CTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGA                                                                            >  SRR4302543.780445/1‑94 (MQ=60)

                   TGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGAC                                                                           >  SRR4302543.4941377/1‑94 (MQ=60)

                   TGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGAC                                                                           >  SRR4302543.5239798/1‑94 (MQ=60)

                     AAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCAGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAA                                                                         >  SRR4302543.2982504/1‑94 (MQ=60)

                     AAAAACCTCACTCCGCCCCGAGTATTCTCGTCGAAGCATTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAA                                                                         <  SRR4302543.5498342/94‑1 (MQ=60)

                      AGAACCTCACTCCGCACCGGGTATTCTCGGCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAAT                                                                        <  SRR4302543.2458748/94‑1 (MQ=60)

                       GAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATA                                                                       <  SRR4302543.5481858/94‑1 (MQ=60)

                       GAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATA                                                                       <  SRR4302543.4028521/94‑1 (MQ=60)

                       GAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATA                                                                       <  SRR4302543.7524542/94‑1 (MQ=60)

                       GAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATA                                                                       <  SRR4302543.4938601/94‑1 (MQ=60)

                        AACCTCCCTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATAT                                                                      <  SRR4302543.4607800/94‑1 (MQ=60)

                         ACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATT                                                                     >  SRR4302543.2866883/1‑94 (MQ=60)

                           CTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCC                                                                   >  SRR4302543.5497293/1‑94 (MQ=60)

                           CTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCC                                                                   >  SRR4302543.1131966/1‑94 (MQ=60)

                            TCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCC                                                                  >  SRR4302543.7575648/1‑94 (MQ=60)

                              CCTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGA                                                                <  SRR4302543.2826484/94‑1 (MQ=60)

                              ACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGA                                                                >  SRR4302543.444599/1‑94 (MQ=60)

                              ACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGA                                                                >  SRR4302543.6937132/1‑94 (MQ=60)

                              ACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGA                                                                >  SRR4302543.7006517/1‑94 (MQ=60)

                              ACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGA                                                                >  SRR4302543.7315111/1‑94 (MQ=60)

                               CTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGAC                                                               >  SRR4302543.5768408/1‑94 (MQ=60)

                                 CCGCACCGGGTATTCTCGTCGAAGCACTGAAGCGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAA                                                             <  SRR4302543.131318/94‑1 (MQ=60)

                                  CGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAAT                                                            <  SRR4302543.4809215/94‑1 (MQ=60)

                                   GCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTCCCGTGCTCTCCTGCGCCAATATTCCCGGCAATG                                                           >  SRR4302543.52098/1‑94 (MQ=60)

                                   GCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATG                                                           <  SRR4302543.5513769/94‑1 (MQ=60)

                                   GCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATG                                                           <  SRR4302543.4918870/94‑1 (MQ=60)

                                   GCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATG                                                           <  SRR4302543.3123391/94‑1 (MQ=60)

                                    CACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGG                                                          >  SRR4302543.7225751/1‑94 (MQ=60)

                                     ACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGT                                                         >  SRR4302543.5707587/1‑94 (MQ=60)

                                     ACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGT                                                         >  SRR4302543.5449397/1‑94 (MQ=60)

                                     ACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGT                                                         <  SRR4302543.6816500/94‑1 (MQ=60)

                                      CCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTC                                                        >  SRR4302543.6392582/1‑94 (MQ=60)

                                      CCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTC                                                        >  SRR4302543.5676797/1‑94 (MQ=60)

                                       CGGGTATTCTCGTCGAAGCCCTGAACCGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCA                                                       <  SRR4302543.6086843/94‑1 (MQ=60)

                                       CGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACCATGGTCA                                                       >  SRR4302543.1901059/1‑94 (MQ=60)

                                       CGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCA                                                       >  SRR4302543.2749658/1‑94 (MQ=60)

                                       CGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCA                                                       >  SRR4302543.2749657/1‑94 (MQ=60)

                                        GGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCAT                                                      >  SRR4302543.2691635/1‑94 (MQ=60)

                                        GGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCAT                                                      <  SRR4302543.7806114/94‑1 (MQ=60)

                                         GGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATG                                                     <  SRR4302543.5372168/94‑1 (MQ=60)

                                          GTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGT                                                    >  SRR4302543.1567618/1‑94 (MQ=60)

                                          GTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGT                                                    >  SRR4302543.1654708/1‑94 (MQ=60)

                                            ATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGG                                                  <  SRR4302543.2869105/94‑1 (MQ=60)

                                            ATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGG                                                  <  SRR4302543.5792294/94‑1 (MQ=60)

                                              TCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTG                                                <  SRR4302543.3413018/94‑1 (MQ=60)

                                              TCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTG                                                <  SRR4302543.6640563/94‑1 (MQ=60)

                                               CTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGA                                               >  SRR4302543.5526051/1‑94 (MQ=60)

                                               CTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGA                                               >  SRR4302543.7258260/1‑94 (MQ=60)

                                                TCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAA                                              <  SRR4302543.483517/94‑1 (MQ=60)

                                                   TCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAA                                           <  SRR4302543.1766326/94‑1 (MQ=60)

                                                   TCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAA                                           >  SRR4302543.3002117/1‑94 (MQ=60)

                                                    CGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAAC                                          <  SRR4302543.7955414/94‑1 (MQ=60)

                                                    CGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAAC                                          <  SRR4302543.2881095/94‑1 (MQ=60)

                                                    CGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAAC                                          >  SRR4302543.1691269/1‑94 (MQ=60)

                                                    CGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAAC                                          >  SRR4302543.4903940/1‑94 (MQ=60)

                                                    CGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAAC                                          <  SRR4302543.266327/94‑1 (MQ=60)

                                                    CGAAGAACTGAAACGCCGCCGTGAGCGCGGCCTTAAAACGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAACAC                                          >  SRR4302543.4670684/1‑94 (MQ=60)

                                                      AAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGC                                        >  SRR4302543.1395667/1‑94 (MQ=60)

                                                       AGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCG                                       >  SRR4302543.2304398/1‑94 (MQ=60)

                                                        GCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGG                                      <  SRR4302543.5113187/94‑1 (MQ=60)

                                                         CACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTTCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGT                                     <  SRR4302543.599145/94‑1 (MQ=60)

                                                         CACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGT                                     <  SRR4302543.1045075/94‑1 (MQ=60)

                                                          CCTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTG                                    <  SRR4302543.1868107/94‑1 (MQ=60)

                                                          ACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTG                                    >  SRR4302543.6582947/1‑94 (MQ=60)

                                                           CTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGC                                   >  SRR4302543.4091628/1‑94 (MQ=60)

                                                            TGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCT                                  >  SRR4302543.44027/1‑94 (MQ=60)

                                                            TGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCT                                  >  SRR4302543.4058256/1‑94 (MQ=60)

                                                            TGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGGCATGTGGTGAAAAACGCGGTGCT                                  >  SRR4302543.3538733/1‑94 (MQ=60)

                                                             AAAACGCCGCCGGGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTG                                 <  SRR4302543.6985414/94‑1 (MQ=60)

                                                              AAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGG                                >  SRR4302543.501382/1‑94 (MQ=60)

                                                               AACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGA                               >  SRR4302543.1188136/1‑94 (MQ=60)

                                                                ACGCCGCCGTGAGCGCGACCTTACACAGATTACCGTGCTCTCCTGCGACAATAATCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGA                              <  SRR4302543.6093836/94‑1 (MQ=60)

                                                                 CGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAA                             <  SRR4302543.6950636/94‑1 (MQ=60)

                                                                 CGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAA                             >  SRR4302543.1067777/1‑94 (MQ=60)

                                                                 CGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAA                             <  SRR4302543.5241806/94‑1 (MQ=60)

                                                                  GCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAAT                            >  SRR4302543.7128533/1‑94 (MQ=60)

                                                                   CCGGCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATG                           <  SRR4302543.1562406/94‑1 (MQ=60)

                                                                   CCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATG                           <  SRR4302543.6793979/94‑1 (MQ=60)

                                                                    CGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGG                          <  SRR4302543.4503230/94‑1 (MQ=60)

                                                                      CCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCA                        <  SRR4302543.1696167/94‑1 (MQ=60)

                                                                      CCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCA                        >  SRR4302543.5696096/1‑94 (MQ=60)

                                                                       CGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAG                       >  SRR4302543.1548364/1‑94 (MQ=60)

                                                                       CGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAG                       <  SRR4302543.6641212/94‑1 (MQ=60)

                                                                       CGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAG                       <  SRR4302543.384008/94‑1 (MQ=60)

                                                                        GTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGA                      >  SRR4302543.1539883/1‑94 (MQ=60)

                                                                        GTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGA                      >  SRR4302543.2371323/1‑94 (MQ=60)

                                                                        GTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGA                      >  SRR4302543.4854752/1‑94 (MQ=60)

                                                                          GAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAA                    <  SRR4302543.203215/94‑1 (MQ=60)

                                                                           GGCGCGGCCTTACACCGCTTCCCGTTCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAA                   <  SRR4302543.6087300/94‑1 (MQ=60)

                                                                           AGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAA                   <  SRR4302543.6087301/94‑1 (MQ=60)

                                                                               CGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAAACGT               >  SRR4302543.465784/1‑94 (MQ=60)

                                                                               CGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAAACGT               >  SRR4302543.6329497/1‑94 (MQ=60)

                                                                                GGCCTTACCCCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAAACGTT              <  SRR4302543.1132502/94‑1 (MQ=60)

                                                                                GGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAAACGTT              <  SRR4302543.5963141/94‑1 (MQ=60)

                                                                                GGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAAACGTT              <  SRR4302543.3350751/94‑1 (MQ=60)

                                                                                GGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAAACGTT              >  SRR4302543.7563335/1‑94 (MQ=60)

                                                                                  CCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAAACGTTCG            <  SRR4302543.5717122/94‑1 (MQ=60)

                                                                                   CTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAAACGTTCGC           >  SRR4302543.4519661/1‑94 (MQ=60)

                                                                                      ACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAAACGTTCGCCAG        <  SRR4302543.2128774/94‑1 (MQ=60)

                                                                                      ACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAAACGTTCGCCAG        <  SRR4302543.3021135/94‑1 (MQ=60)

                                                                                       CACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAAACGTTCGCCAGA       >  SRR4302543.6833281/1‑94 (MQ=60)

                                                                                         CCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAAACGTTCGCCAGAAC     <  SRR4302543.3403517/94‑1 (MQ=60)

                                                                                          CGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAAACGTTCGCCAGAACT    >  SRR4302543.5291720/1‑94 (MQ=60)

                                                                                           GCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAAACGTTCGCCAGAACTC   <  SRR4302543.7306792/94‑1 (MQ=60)

                                                                                           GCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAAACGTTCGCCAGAACTC   <  SRR4302543.1649302/94‑1 (MQ=60)

                                                                                            CTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAAACGTTCGCCAGAACTCG  <  SRR4302543.5085557/94‑1 (MQ=60)

                                                                                            CTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAAACGTTCGCCAGAACTCG  >  SRR4302543.4522207/1‑94 (MQ=60)

TTCACGATCTACAAACCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGTTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAAACGTTCGCCAGAACTCG  >  NC_000913/2264710‑2264895

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 6 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`