Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1696	279.3	15874187	97.8%	15524954	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,152,247	+C	intergenic (+10/+29)	yghB → / ← yqhC	hypothetical protein/putative ARAC‑type regulatory protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,152,244	1	.	C	99.6%	893.4 / ‑3.9	279	intergenic (+7/+32)	yghB/yqhC	hypothetical protein/putative ARAC‑type regulatory protein
Reads supporting (aligned to +/- strand): ref base . (1/0); new base C (160/118); total (161/118)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.00e-01

Only 100 of 356 total aligned reads displayed.

TGATGATCCTGCCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTT‑CCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAG  >  NC_000913/3152152‑3152333

tgatgaTCCTGCCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGAtttt                                                                                            >  1:295234/1‑93 (MQ=255)

tgatgaTCCTGCCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGAtttt                                                                                            >  1:6808190/1‑93 (MQ=255)

    gatCCTGCCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTtt‑cccc                                                                                       >  2:153556/1‑92 (MQ=255)

    gatCCTGCCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTtt‑cccc                                                                                       <  2:3626657/93‑2 (MQ=255)

       ccTGCCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTtt‑ccccgtt                                                                                    <  2:5119065/93‑5 (MQ=255)

         tGCCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTtccccgttcc                                                                                   <  2:3955982/93‑1 (MQ=255)

          ccaaaTTGCCTGGTAAACCGTTGGCTGGTTGGGCCCGCTTTTTGTGTTGATTAAAAAAAAATACTGTAACGCCGGACGATTTtccccgttccc                                                                                  <  2:2779879/90‑1 (MQ=255)

           ccAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTtccccgttcccg                                                                                 <  2:7190626/93‑1 (MQ=255)

             aaTTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGt                                                                               >  1:4643234/1‑93 (MQ=255)

             aaTTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGt                                                                               <  2:6623639/93‑1 (MQ=255)

             aaTTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGt                                                                               <  2:7470548/93‑1 (MQ=255)

              aTTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGtt                                                                              >  2:3302115/1‑93 (MQ=255)

              aTTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGtt                                                                              >  2:6154311/1‑93 (MQ=255)

                tGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGc                                                                            <  1:5723016/93‑1 (MQ=255)

                 gCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCt                                                                           >  1:1245190/1‑93 (MQ=255)

                 gCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCt                                                                           >  2:5294217/1‑93 (MQ=255)

                  ccTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTg                                                                          <  2:2801246/93‑1 (MQ=255)

                  ccTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTg                                                                          >  2:1807214/1‑93 (MQ=255)

                  ccTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTg                                                                          <  2:5951882/93‑1 (MQ=255)

                   cTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGt                                                                         <  1:3350236/93‑1 (MQ=255)

                    ttGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTa                                                                        >  1:7679844/1‑93 (MQ=255)

                    ttGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTa                                                                        >  1:5325158/1‑93 (MQ=255)

                    ttGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTa                                                                        >  1:4870303/1‑93 (MQ=255)

                    ttGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTa                                                                        >  1:116347/1‑93 (MQ=255)

                    ttGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTa                                                                        <  1:3633358/93‑1 (MQ=255)

                      gTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTAcc                                                                      <  2:1704605/93‑1 (MQ=255)

                       ttAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCg                                                                     >  2:3353039/1‑93 (MQ=255)

                       ttAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCg                                                                     >  1:7571819/1‑93 (MQ=255)

                       ttAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCg                                                                     <  1:4409561/93‑1 (MQ=255)

                       ttAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCg                                                                     <  1:3848862/93‑1 (MQ=255)

                        naaCCGCNGGCTTGTTACGCNNTNTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCgg                                                                    <  1:1981085/92‑1 (MQ=255)

                          aCCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGa                                                                  >  2:3134726/1‑93 (MQ=255)

                           ccGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGaa                                                                 >  1:2153444/1‑93 (MQ=255)

                            cGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAAc                                                                <  2:4912640/93‑1 (MQ=255)

                             gCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACg                                                               >  2:7690134/1‑93 (MQ=255)

                              cTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGt                                                              <  1:5125250/93‑1 (MQ=255)

                              cTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGt                                                              >  2:6535171/1‑93 (MQ=255)

                                ggCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTAt                                                            <  2:4779183/93‑1 (MQ=255)

                                 gCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTAtt                                                           <  1:3703782/93‑1 (MQ=255)

                                 gCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTAtt                                                           <  1:5517450/93‑1 (MQ=255)

                                    tGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTaa                                                        <  2:2153443/93‑1 (MQ=255)

                                    tGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTaa                                                        <  2:4503278/93‑1 (MQ=255)

                                     gTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAAt                                                       <  1:709621/93‑1 (MQ=255)

                                     gTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAAGACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAAt                                                       <  2:2294405/93‑1 (MQ=255)

                                       tAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTc                                                     <  2:1076292/93‑1 (MQ=255)

                                         ggCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGGTGCTGTACCGGGGACGGATTTAATTtcc                                                   >  1:1416338/1‑93 (MQ=255)

                                          gCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTcccc                                                  <  1:2859827/93‑1 (MQ=255)

                                          gCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTcccc                                                  >  1:6013255/1‑93 (MQ=255)

                                           gaCGCTGTCTGTGGTGAATAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCt                                                 <  1:2506098/92‑1 (MQ=255)

                                           cACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCt                                                 <  2:4581484/93‑1 (MQ=255)

                                            aCGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTg                                                <  1:6368821/93‑1 (MQ=255)

                                              gCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCa                                              <  2:7370340/93‑1 (MQ=255)

                                               cTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCAt                                             >  1:3078188/1‑93 (MQ=255)

                                                tGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATc                                            <  2:6283278/93‑1 (MQ=255)

                                                tGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCCGCATc                                            >  1:3236471/1‑93 (MQ=255)

                                                 gTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCg                                           >  2:7918980/1‑93 (MQ=255)

                                                 gTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCg                                           >  1:3143196/1‑93 (MQ=255)

                                                  tttGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGc                                          <  1:5029284/93‑1 (MQ=255)

                                                   ttGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATCCCCCTGCATCGcc                                         <  2:1100868/93‑1 (MQ=255)

                                                        gtgATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGcct                                    >  2:5617233/1‑91 (MQ=255)

                                                         tgATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCAtt                                   >  2:6697193/1‑93 (MQ=255)

                                                         tgATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCAtt                                   >  2:6438614/1‑93 (MQ=255)

                                                          gATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTc                                  >  2:7819134/1‑93 (MQ=255)

                                                          gATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTc                                  >  1:6125502/1‑93 (MQ=255)

                                                          gATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTc                                  <  1:342810/93‑1 (MQ=255)

                                                           aTTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCt                                 <  2:3255842/93‑1 (MQ=255)

                                                           aTTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCt                                 >  2:6180581/1‑93 (MQ=255)

                                                             tAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCttc                               >  2:3883764/1‑92 (MQ=255)

                                                              aaaaaaaaaTACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGc                              <  1:6414140/93‑1 (MQ=255)

                                                                 aaaaaaTACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGNCGc                           >  2:2720355/1‑93 (MQ=255)

                                                                 aaaaaaTACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGc                           >  2:2646525/1‑93 (MQ=255)

                                                                  aaaaaTACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCa                          <  2:1013021/93‑1 (MQ=255)

                                                                    aaaTACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATc                        <  2:1945151/93‑1 (MQ=255)

                                                                    aaaTACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATc                        >  2:6847785/1‑93 (MQ=255)

                                                                     aaTACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCt                       >  1:5794959/1‑93 (MQ=255)

                                                                     aaTACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCt                       >  1:4796684/1‑93 (MQ=255)

                                                                      aTACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCtt                      <  2:2492181/93‑1 (MQ=255)

                                                                        aCTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTcc                    >  1:2286505/1‑93 (MQ=255)

                                                                        aCTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTcc                    >  1:1897529/1‑93 (MQ=255)

                                                                         cTGTAACGCCTGACGATTTTCCCCGTTCCCCGTTGCTGTACCCGGGACGTATTTTATTTCCCTGCATCGCCCGCCTTCTTTCCGCATCTTccc                   >  2:2975187/1‑93 (MQ=255)

                                                                          tGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTcccc                  <  1:1604944/93‑1 (MQ=255)

                                                                          tGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTcccc                  <  1:732877/93‑1 (MQ=255)

                                                                           gTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTccccc                 <  1:6489243/93‑1 (MQ=255)

                                                                           gTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTccccc                 >  2:697831/1‑93 (MQ=255)

                                                                            tAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCg                >  1:692955/1‑93 (MQ=255)

                                                                                gCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGt            >  2:6216402/1‑93 (MQ=255)

                                                                                gCCTGACGATTTTCCCCGTTCCCGGGTGCTGTACCGGGGAAGCATTTAATTTCCCCGCCTCGCCCGCCGTCTTTCCGCATCTTCCCCCCGccc            >  2:1465066/1‑91 (MQ=255)

                                                                                 ccTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGGACGGATTTAATTTCCCTGCATCGCCCGCATTCTTTCCGCATCTTCCCCCcgcggc           >  2:5699722/1‑91 (MQ=255)

                                                                                 ccTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGCCGTc           >  1:3782053/1‑93 (MQ=255)

                                                                                  cTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGGACGGATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTca          >  2:6922690/1‑93 (MQ=255)

                                                                                  cTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTca          <  2:4039647/93‑1 (MQ=255)

                                                                                   cgACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTcac         <  1:6728835/92‑1 (MQ=255)

                                                                                    gACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTcaca        >  1:4005581/1‑93 (MQ=255)

                                                                                     aCGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCacac       <  1:5004982/93‑1 (MQ=255)

                                                                                     aCGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCacac       <  1:1715022/93‑1 (MQ=255)

                                                                                      gattttc‑CCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCg     <  1:7409382/90‑1 (MQ=255)

                                                                                      cGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACAcc      <  2:5424497/93‑1 (MQ=255)

                                                                                        ttttc‑CCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGaa   >  2:5345612/2‑93 (MQ=255)

                                                                                        aTTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGa    >  2:2007807/1‑93 (MQ=255)

                                                                                        aTTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGa    >  1:1058692/1‑93 (MQ=255)

TGATGATCCTGCCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTT‑CCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAG  >  NC_000913/3152152‑3152333

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ATGATCCTGCCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTT‑CCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGT  >  NC_000913/3152154‑3152339

ATGATCCTGCCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTT‑CCC                                                                                               >  SRR4302543.3881090/1‑94 (MQ=60)

ATGATCCTGCCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTT‑CCC                                                                                               >  SRR4302543.4961902/1‑94 (MQ=60)

 TGATCCTGCCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTT‑CCC‑C                                                                                             >  SRR4302543.1158887/1‑94 (MQ=60)

 TGATCCTGCCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTT‑CCC‑C                                                                                             <  SRR4302543.6245729/94‑1 (MQ=60)

  GATCCTGCCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTT‑CCCcg                                                                                             >  SRR4302543.2458238/1‑92 (MQ=60)

  GATCCTGCCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTT‑CCCcg                                                                                             <  SRR4302543.7316014/94‑3 (MQ=60)

   ATCCTGCCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTT‑CCCcgt                                                                                            <  SRR4302543.5254770/94‑4 (MQ=60)

    TCCTGCCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTT                                                                                           <  SRR4302543.3772773/94‑1 (MQ=60)

     CCTGCCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGCTTTTCCCC‑GTTC                                                                                          >  SRR4302543.2796703/1‑94 (MQ=60)

      CTGCCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCC                                                                                         >  SRR4302543.2719730/1‑94 (MQ=60)

      CTGCCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTT‑CCCAGTTCC                                                                                         >  SRR4302543.2116762/1‑94 (MQ=60)

       TGCCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCC                                                                                        <  SRR4302543.5807482/94‑1 (MQ=60)

       TGCCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCC                                                                                        >  SRR4302543.3768623/1‑94 (MQ=60)

       TGCCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCC                                                                                        <  SRR4302543.6849529/94‑1 (MQ=60)

       TGCCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCC                                                                                        <  SRR4302543.2753022/94‑1 (MQ=60)

         CCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGCTTTT‑CCCcggtaccgg                                                                                      >  SRR4302543.4075804/1‑85 (MQ=60)

          CAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGT                                                                                     >  SRR4302543.4685475/1‑94 (MQ=60)

           AATTGCCTTGTTAACCGCTGGCTTGTTATGCACGCTGTTTGTGGTGATTAAAAAAAAACACTGTAACGCCTCGCGATTTTCCCC‑GTTCCCGGTT                                                                                    >  SRR4302543.5537304/1‑94 (MQ=60)

           AATTGCCTTGTTAACCGCTGGCTTGTTAGGCCCGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTT                                                                                    >  SRR4302543.3294011/1‑94 (MQ=60)

           AATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTT                                                                                    <  SRR4302543.4933059/94‑1 (MQ=60)

            ATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTG                                                                                   <  SRR4302543.5842426/94‑1 (MQ=60)

             TTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGC                                                                                  >  SRR4302543.3975133/1‑94 (MQ=60)

              TGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCT                                                                                 >  SRR4302543.1256367/1‑94 (MQ=60)

              TGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCT                                                                                 <  SRR4302543.5775236/94‑1 (MQ=60)

              TGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCT                                                                                 >  SRR4302543.6005637/1‑94 (MQ=60)

               GCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTG                                                                                >  SRR4302543.4873047/1‑94 (MQ=60)

               GCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTG                                                                                >  SRR4302543.3711800/1‑94 (MQ=60)

                CCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGT                                                                               >  SRR4302543.1251813/1‑94 (MQ=60)

                CCTTGTTAACCGCTGGCTTGTTAGGCACCCTGGTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGT                                                                               <  SRR4302543.714457/94‑1 (MQ=60)

                 CTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTA                                                                              >  SRR4302543.5373316/1‑94 (MQ=60)

                 CTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTA                                                                              >  SRR4302543.4914700/1‑94 (MQ=60)

                 CTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTA                                                                              <  SRR4302543.3380400/94‑1 (MQ=60)

                 CTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTA                                                                              >  SRR4302543.7752590/1‑94 (MQ=60)

                 CTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTA                                                                              >  SRR4302543.117400/1‑94 (MQ=60)

                  TTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTAC                                                                             <  SRR4302543.3665341/94‑1 (MQ=60)

                   TGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACC                                                                            >  SRR4302543.4983523/1‑94 (MQ=60)

                   TGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACC                                                                            <  SRR4302543.5408732/94‑1 (MQ=60)

                    GTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCG                                                                           >  SRR4302543.7643848/1‑94 (MQ=60)

                    GTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCG                                                                           >  SRR4302543.3955488/1‑94 (MQ=60)

                    GTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCG                                                                           >  SRR4302543.7610391/1‑94 (MQ=60)

                     TTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGG                                                                          <  SRR4302543.4449531/94‑1 (MQ=60)

                     TTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGG                                                                          <  SRR4302543.3882860/94‑1 (MQ=60)

                      NAACCGCNGGCTTGTTACGCNNTNTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGG                                                                         <  SRR4302543.1998843/94‑1 (MQ=60)

                        ACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAA                                                                       >  SRR4302543.2172727/1‑94 (MQ=60)

                         CCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAAC                                                                      <  SRR4302543.4144382/94‑1 (MQ=60)

                            CTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTA                                                                   <  SRR4302543.3334655/94‑1 (MQ=60)

                            CTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTA                                                                   <  SRR4302543.5171586/94‑1 (MQ=60)

                             TGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTAT                                                                  >  SRR4302543.7528291/1‑94 (MQ=60)

                             TGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTAT                                                                  <  SRR4302543.3677982/94‑1 (MQ=60)

                             TGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTAT                                                                  <  SRR4302543.5050804/94‑1 (MQ=60)

                               GCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTT                                                                <  SRR4302543.3736344/94‑1 (MQ=60)

                               GCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTT                                                                <  SRR4302543.1642538/94‑1 (MQ=60)

                               GCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTT                                                                <  SRR4302543.5567560/94‑1 (MQ=60)

                                CTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTA                                                               >  SRR4302543.4601716/1‑94 (MQ=60)

                                CTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTA                                                               >  SRR4302543.7379480/1‑94 (MQ=60)

                                CTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTA                                                               >  SRR4302543.6042929/1‑94 (MQ=60)

                                 TTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAA                                                              <  SRR4302543.2466463/94‑1 (MQ=60)

                                 TTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAA                                                              >  SRR4302543.3052723/1‑94 (MQ=60)

                                  TGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGGACGTATTTAAT                                                             >  SRR4302543.7178504/1‑94 (MQ=60)

                                  TGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAAT                                                             >  SRR4302543.1213268/1‑94 (MQ=60)

                                  TGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAAT                                                             <  SRR4302543.2073891/94‑1 (MQ=60)

                                  TGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAAT                                                             >  SRR4302543.1251082/1‑94 (MQ=60)

                                  TGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAAT                                                             <  SRR4302543.1998007/94‑1 (MQ=60)

                                   GTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGTTTGCTGTACCGGGAACGTATTTAATT                                                            <  SRR4302543.6901104/94‑1 (MQ=60)

                                   GTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATT                                                            <  SRR4302543.716067/94‑1 (MQ=60)

                                      AGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCC                                                         >  SRR4302543.4695196/1‑94 (MQ=60)

                                      AGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGGTGCTGTACCGGGGACGGATTTAATTTCC                                                         >  SRR4302543.1429161/1‑94 (MQ=60)

                                      AGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGGTGCTGTACCGGGCACGGATTTACTCCCC                                                         >  SRR4302543.5455693/1‑94 (MQ=60)

                                       GGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCC                                                        >  SRR4302543.6068798/1‑94 (MQ=60)

                                       GGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCC                                                        <  SRR4302543.7013857/94‑1 (MQ=60)

                                       GGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCC                                                        <  SRR4302543.3073282/94‑1 (MQ=60)

                                        GCACGCTGTTTGTGGTTATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCT                                                       <  SRR4302543.1608478/94‑1 (MQ=60)

                                        GCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCT                                                       <  SRR4302543.5133470/94‑1 (MQ=60)

                                        GCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCT                                                       <  SRR4302543.2885908/94‑1 (MQ=60)

                                         GACGCTGTCTGTGGTGAATAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTG                                                      <  SRR4302543.2528854/94‑1 (MQ=60)

                                         CACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTG                                                      >  SRR4302543.4026391/1‑94 (MQ=60)

                                          ACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGC                                                     >  SRR4302543.7461602/1‑94 (MQ=60)

                                          ACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGC                                                     <  SRR4302543.6428720/94‑1 (MQ=60)

                                            GCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCAT                                                   >  SRR4302543.3431533/1‑94 (MQ=60)

                                            GCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCAT                                                   >  SRR4302543.6098171/1‑94 (MQ=60)

                                            GCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCAT                                                   >  SRR4302543.3105868/1‑94 (MQ=60)

                                            GCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCAT                                                   >  SRR4302543.4522088/1‑94 (MQ=60)

                                             CTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATC                                                  <  SRR4302543.6314066/94‑1 (MQ=60)

                                             CTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATC                                                  >  SRR4302543.4708512/1‑94 (MQ=60)

                                             CTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATC                                                  >  SRR4302543.3265747/1‑94 (MQ=60)

                                             CTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCCGCATC                                                  >  SRR4302543.3265748/1‑94 (MQ=60)

                                             CTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGGATTTTATTTCCCCGCATC                                                  >  SRR4302543.1497852/1‑94 (MQ=60)

                                              TGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCG                                                 >  SRR4302543.3171466/1‑94 (MQ=60)

                                              TGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCG                                                 <  SRR4302543.2974797/94‑1 (MQ=60)

                                              TGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCG                                                 >  SRR4302543.6519830/1‑94 (MQ=60)

                                              TGTTTGGGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCG                                                 <  SRR4302543.4527040/94‑1 (MQ=60)

                                               GTTTGTTGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGC                                                <  SRR4302543.856853/94‑1 (MQ=60)

                                                TTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCC                                               <  SRR4302543.5075047/94‑1 (MQ=60)

                                                TTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCC                                               >  SRR4302543.7001556/1‑94 (MQ=60)

                                                TTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCC                                               <  SRR4302543.7440689/94‑1 (MQ=60)

                                                TTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCC                                               <  SRR4302543.3785524/94‑1 (MQ=60)

                                                 TTGTAGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCTGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCC                                              <  SRR4302543.1726802/94‑1 (MQ=60)

                                                    TGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCA                                           >  SRR4302543.1334733/1‑94 (MQ=60)

                                                     GGTGATTAAAAAAAAATTCTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCAT                                          <  SRR4302543.3140154/94‑1 (MQ=60)

                                                     GGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCAT                                          <  SRR4302543.1796324/94‑1 (MQ=60)

                                                     GGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCAT                                          <  SRR4302543.6443098/94‑1 (MQ=60)

                                                     GGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCAT                                          <  SRR4302543.3140153/94‑1 (MQ=60)

                                                     GGGGAATAAAAAAAAATACTGAAACGCCGGACGATTTTCCCC‑GTTCCAGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCAT                                          <  SRR4302543.6791683/94‑1 (MQ=60)

                                                      GTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGGACGGATTTAATTCCCCcgcattgcccccctt                                         >  SRR4302543.1460348/1‑79 (MQ=60)

                                                       TGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTC                                        <  SRR4302543.5095167/94‑1 (MQ=60)

                                                       TGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTC                                        >  SRR4302543.6183513/1‑94 (MQ=60)

                                                       TGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTC                                        >  SRR4302543.1323140/1‑94 (MQ=60)

                                                        GATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCT                                       <  SRR4302543.345970/94‑1 (MQ=60)

                                                        GATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCT                                       <  SRR4302543.3236231/94‑1 (MQ=60)

                                                        GATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCT                                       <  SRR4302543.3242734/94‑1 (MQ=60)

                                                        GATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCT                                       <  SRR4302543.3610004/94‑1 (MQ=60)

                                                         ATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTT                                      <  SRR4302543.579528/94‑1 (MQ=60)

                                                         ATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTT                                      >  SRR4302543.6805117/1‑94 (MQ=60)

                                                         ATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTT                                      <  SRR4302543.1861177/94‑1 (MQ=60)

                                                          ATAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTG                                     <  SRR4302543.1940065/94‑1 (MQ=60)

                                                           TAAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGC                                    >  SRR4302543.2723716/1‑94 (MQ=60)

                                                            AAAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCC                                   <  SRR4302543.6474555/94‑1 (MQ=60)

                                                             AAAAAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCG                                  >  SRR4302543.3474901/1‑94 (MQ=60)

                                                                AAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTGCCGGGTGCTGTACCCGGGACGAATTTTATTTCCCTGCATCGCCCCCATTCTTTCCCCAT                               >  SRR4302543.1803190/1‑94 (MQ=32)

                                                                AAAAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACCTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCAT                               >  SRR4302543.2056848/1‑94 (MQ=60)

                                                                  AAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCT                             >  SRR4302543.4840528/1‑94 (MQ=60)

                                                                  AAATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCT                             >  SRR4302543.5847681/1‑94 (MQ=60)

                                                                   AATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTT                            >  SRR4302543.4823028/1‑94 (MQ=60)

                                                                    ATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTC                           >  SRR4302543.7727212/1‑94 (MQ=60)

                                                                    ATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTC                           >  SRR4302543.7483712/1‑94 (MQ=60)

                                                                    ATACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCACCTGCATCGACCGCATTCTTGCCGCATCTTC                           >  SRR4302543.1660156/1‑94 (MQ=60)

                                                                     TACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCC                          >  SRR4302543.2307384/1‑94 (MQ=60)

                                                                     TACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCC                          <  SRR4302543.5300455/94‑1 (MQ=60)

                                                                     TACTGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCC                          >  SRR4302543.1914600/1‑94 (MQ=60)

                                                                        TGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCC                       <  SRR4302543.1619267/94‑1 (MQ=60)

                                                                        TGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCC                       <  SRR4302543.739443/94‑1 (MQ=60)

                                                                        TGTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCC                       <  SRR4302543.5121465/94‑1 (MQ=60)

                                                                         GTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCG                      <  SRR4302543.6550375/94‑1 (MQ=60)

                                                                         GTAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCG                      >  SRR4302543.699312/1‑94 (MQ=60)

                                                                          TAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGG                     >  SRR4302543.3649456/1‑94 (MQ=60)

                                                                          TAACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGG                     >  SRR4302543.3438163/1‑94 (MQ=60)

                                                                           AACTCCTGACGATTTTCCCC‑GTTCCCTGTTTCTGTACCGGGATCGTTTTTAATTCCCCTGCATCCCCCGCATTCTTGCCGCATCTTTCCCCGGC                    <  SRR4302543.1530747/94‑1 (MQ=60)

                                                                           AACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGC                    >  SRR4302543.5618876/1‑94 (MQ=60)

                                                                           AACGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCACTGCATCGCCCGCATTCTTGCCGCAGCTTCCCCCGGC                    >  SRR4302543.3846028/1‑94 (MQ=60)

                                                                             CGCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGGACGTATTTAATTTCCCTGCATCGGCCGCATTCTTTCCCCATCTTTCCCCGGCGT                  >  SRR4302543.1549760/1‑94 (MQ=60)

                                                                              GCCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGCCGTC                 >  SRR4302543.3815368/1‑94 (MQ=60)

                                                                               CCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTTCCCCGGCGTCA                >  SRR4302543.2946589/1‑94 (MQ=60)

                                                                               CCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCA                <  SRR4302543.109938/94‑1 (MQ=60)

                                                                               CCTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCA                >  SRR4302543.653238/1‑94 (MQ=60)

                                                                                CTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCCC               >  SRR4302543.6101456/1‑94 (MQ=60)

                                                                                CTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCAC               >  SRR4302543.6587546/1‑94 (MQ=60)

                                                                                CTGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCAC               >  SRR4302543.5613358/1‑94 (MQ=60)

                                                                                 TGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACA              >  SRR4302543.4041324/1‑94 (MQ=60)

                                                                                 TGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGGATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACA              <  SRR4302543.6792403/94‑1 (MQ=60)

                                                                                 CGACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACA              <  SRR4302543.6792402/94‑1 (MQ=60)

                                                                                   ACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACC            <  SRR4302543.1822571/94‑1 (MQ=60)

                                                                                   ACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACC            <  SRR4302543.2280624/94‑1 (MQ=60)

                                                                                   ACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACC            <  SRR4302543.5050537/94‑1 (MQ=60)

                                                                                   ACGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACC            <  SRR4302543.1730351/94‑1 (MQ=60)

                                                                                    CGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCG           >  SRR4302543.4288547/1‑94 (MQ=60)

                                                                                    CGATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCG           <  SRR4302543.6431450/94‑1 (MQ=60)

                                                                                     GATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGA          >  SRR4302543.1068187/1‑94 (MQ=60)

                                                                                     GATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGA          >  SRR4302543.4911082/1‑94 (MQ=60)

                                                                                     GATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGA          <  SRR4302543.7480481/94‑1 (MQ=60)

                                                                                      ATTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAA         >  SRR4302543.2286405/1‑94 (MQ=60)

                                                                                       TTTTCCCC‑GTTCCCGGTTGCTGTACCGGGGACGTATTTAATTTCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAG        >  SRR4302543.6502767/1‑94 (MQ=60)

                                                                                       TTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAG        <  SRR4302543.5854268/94‑1 (MQ=60)

                                                                                       TTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAG        <  SRR4302543.2292267/94‑1 (MQ=60)

                                                                                       TTTTCCCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAG        >  SRR4302543.3447613/1‑94 (MQ=60)

                                                                                       TTTC‑CCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGT       >  SRR4302543.7568318/1‑94 (MQ=60)

                                                                                       TTTC‑CCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGA       >  SRR4302543.1009628/1‑94 (MQ=60)

                                                                                        TTC‑CCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTA      >  SRR4302543.1277915/1‑94 (MQ=60)

                                                                                        TTC‑CCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTA      <  SRR4302543.6799272/94‑1 (MQ=60)

                                                                                          C‑CCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAAC    <  SRR4302543.5051694/94‑1 (MQ=60)

                                                                                          C‑CCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAAC    <  SRR4302543.2585879/94‑1 (MQ=60)

                                                                                          C‑CCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAAC    <  SRR4302543.3837437/94‑1 (MQ=60)

                                                                                          C‑CCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAAC    <  SRR4302543.233926/94‑1 (MQ=60)

                                                                                            CCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACG   <  SRR4302543.458308/94‑1 (MQ=60)

                                                                                            CCC‑GTTCCCGGCTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACG   <  SRR4302543.4395000/94‑1 (MQ=60)

                                                                                            CAC‑GTTCCAGGTTGCTGTACCGGGAACGTATTAAATTCCCCTGCATCacccacattaatgccgcaaaatccaacggcgtcccaccaaaaaaacg   <  SRR4302543.7080855/94‑48 (MQ=60)

                                                                                             CC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGT  <  SRR4302543.3323634/94‑1 (MQ=60)

ATGATCCTGCCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTT‑CCC‑GTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGT  >  NC_000913/3152154‑3152339

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`