Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1696	279.3	15874187	97.8%	15524954	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,186,089	T→C	I225T (ATC→ACC)	yqiG →	putative membrane protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,186,089	0	T	C	99.7%	1092.0 / NA	346	I225T (ATC→ACC)	yqiG	putative membrane protein
Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (175/170); minor base A (1/0); total (176/170)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 357 total aligned reads displayed.

GTACTGATTACCAGTACGATCAGTCATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAATCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGA  >  NC_000913/3185999‑3186178

 tACTGATTACCAGTACGATCAGTCATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAAcccc                                                                                        >  2:4662437/1‑93 (MQ=255)

 tACTGATTACCAGTACGATCAGTCATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAAcccc                                                                                        >  2:5940167/1‑93 (MQ=255)

 tACTGATTACCAGTACGATCAGTCATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAAcccc                                                                                        >  2:3220212/1‑93 (MQ=255)

  aCTGATTACCAGTACGATCAGTCATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCa                                                                                       >  1:7389134/1‑93 (MQ=255)

  aCTGATTACCAGTACGATCAGTCATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCa                                                                                       <  2:1006633/93‑1 (MQ=255)

    tGATTACCAGTACGATCAGTCATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGc                                                                                     >  1:1859326/1‑93 (MQ=255)

    tGATTACCAGTACGATCAGTCATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGc                                                                                     >  1:2707688/1‑93 (MQ=255)

    tGATTACCAGTACGATCAGTCATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGc                                                                                     >  2:6076226/1‑93 (MQ=255)

    tGATTACCAGTACGATCAGTCATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGc                                                                                     >  2:4137575/1‑93 (MQ=255)

      aTTACCAGTACGATCAGTCATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCaa                                                                                   >  1:7910832/1‑93 (MQ=255)

       ttACCAGTACGATCAGTCATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCaat                                                                                  <  1:7581616/93‑1 (MQ=255)

        tACCAGTACGATCAGTCATTTAACATTGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCaatg                                                                                 <  2:5353182/93‑1 (MQ=255)

         aCCAGTACGATCAGTCATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCaatga                                                                                <  2:2451820/93‑1 (MQ=255)

         aCCAGTACGATCAGTCATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCaatga                                                                                >  1:929060/1‑93 (MQ=255)

          ccAGTACGATCAGTCATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCaatgaa                                                                               >  2:113728/1‑93 (MQ=255)

               aCGATCAGTCATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCaa                                                                          >  1:1936677/1‑93 (MQ=255)

                 gATCAGTCATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCaaaa                                                                        <  2:307590/93‑1 (MQ=255)

                  aTCAGTCATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAaac                                                                       >  1:602239/1‑93 (MQ=255)

                  aTCAGTCATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAaac                                                                       <  1:4364305/93‑1 (MQ=255)

                     aGTCATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAaactaa                                                                    <  2:7147087/93‑1 (MQ=255)

                       tCATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAaactaact                                                                  >  2:3565921/1‑93 (MQ=255)

                       tCATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAaactaact                                                                  >  1:6214107/1‑93 (MQ=255)

                        cATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAactaacta                                                                 >  2:6491001/1‑93 (MQ=255)

                        cATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAactaacta                                                                 >  1:1009885/1‑93 (MQ=255)

                        cATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAactaacta                                                                 <  2:6899651/93‑1 (MQ=255)

                        cATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAactaacta                                                                 <  2:6774189/93‑1 (MQ=255)

                          tttAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACtata                                                               <  1:44445/93‑1 (MQ=255)

                          tttAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACtata                                                               <  2:5621923/93‑1 (MQ=255)

                          tttAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACtata                                                               <  2:7417048/93‑1 (MQ=255)

                          tttAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACtata                                                               <  2:424711/93‑1 (MQ=255)

                           ttAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAg                                                              <  1:1444199/93‑1 (MQ=255)

                           ttAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAg                                                              >  1:7514900/1‑93 (MQ=255)

                              aCAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATCAATGCAAAACTAACTATAGGTc                                                           <  2:4978967/93‑1 (MQ=255)

                               cAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCa                                                          >  2:2971953/1‑93 (MQ=255)

                               cAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCa                                                          <  1:4697282/93‑1 (MQ=255)

                                 aTGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAAt                                                        >  1:3546224/1‑93 (MQ=255)

                                 aTGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAAt                                                        >  2:6109810/1‑93 (MQ=255)

                                  tGGCAAAAGCCAGGCGACCAACCTGGCTTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGCATGCAAAACTACCTATAGGTCAATa                                                       >  1:868350/1‑93 (MQ=255)

                                  tGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATa                                                       >  1:3811665/1‑93 (MQ=255)

                                  aggCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATa                                                       <  2:2226813/92‑1 (MQ=255)

                                  aggCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATa                                                       <  1:3778297/92‑1 (MQ=255)

                                    gCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACg                                                     >  1:5840230/1‑93 (MQ=255)

                                     cAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGa                                                    <  2:2134099/93‑1 (MQ=255)

                                       aaaGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATa                                                  >  1:103195/1‑93 (MQ=255)

                                       aaaGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATa                                                  <  2:697252/93‑1 (MQ=255)

                                       aaaGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATa                                                  <  2:5898293/93‑1 (MQ=255)

                                       aaaGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATa                                                  <  1:5080065/93‑1 (MQ=255)

                                       aaaGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATa                                                  >  1:7233182/1‑93 (MQ=255)

                                        aaGCCAGGCGACCAGCCTGGATTTTCCGCGTATTTATTTTTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGAtgc                                                 <  1:4242140/93‑3 (MQ=255)

                                        aaGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATAc                                                 <  1:5456268/93‑1 (MQ=255)

                                          gCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTg                                               >  1:6618770/1‑93 (MQ=255)

                                           ccATGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGa                                              <  2:1836982/93‑1 (MQ=255)

                                            cAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGaa                                             <  2:4462466/93‑1 (MQ=255)

                                             aGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAAt                                            <  2:2362065/93‑1 (MQ=255)

                                              ggCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATc                                           >  2:6850979/1‑93 (MQ=255)

                                                 gACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCctc                                        <  1:840024/93‑1 (MQ=255)

                                                   ccAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTa                                      >  2:482722/1‑93 (MQ=255)

                                                   ccAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTa                                      <  2:3325008/93‑1 (MQ=255)

                                                    cAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTAt                                     <  2:7919841/93‑1 (MQ=255)

                                                     gtccTGGATTTTCCGCGTATTTATTTGTATCGCCCAACCCCAGCAATGAATGCAACCCTAACTATCGGTCAATACGATACTGAATCCTCTAta                                    <  1:7020341/91‑2 (MQ=255)

                                                     aaCCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTAtt                                    <  1:3034932/93‑1 (MQ=255)

                                                     aaCCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTAtt                                    <  1:6754603/93‑1 (MQ=255)

                                                      aCCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTAttt                                   >  1:1647953/1‑93 (MQ=255)

                                                      aCCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTAttt                                   >  2:6658762/1‑93 (MQ=255)

                                                        cTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTc                                 <  2:2799358/93‑1 (MQ=255)

                                                         tGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCg                                <  2:7875272/93‑1 (MQ=255)

                                                         tGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCg                                >  1:1350392/1‑93 (MQ=255)

                                                           gATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGAc                              <  2:2888117/93‑1 (MQ=255)

                                                           gATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGAc                              <  1:3143548/93‑1 (MQ=255)

                                                           gATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGAc                              >  2:1304915/1‑93 (MQ=255)

                                                             ttttCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGActc                            <  1:1101696/93‑1 (MQ=255)

                                                             ttttCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGActc                            >  2:7306735/1‑93 (MQ=255)

                                                             ttttCCGCGTATTTATGTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGActc                            >  2:7505469/1‑93 (MQ=255)

                                                               ttCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCtt                          <  1:5541018/93‑1 (MQ=255)

                                                                tCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCttt                         <  2:3408814/93‑1 (MQ=255)

                                                                 ccGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTc                        >  2:5558832/1‑93 (MQ=255)

                                                                 ccGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTc                        <  2:3790303/93‑1 (MQ=255)

                                                                  cgcgTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTcc                       >  1:4035108/1‑93 (MQ=255)

                                                                   gcgTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTcct                      >  2:6264549/1‑92 (MQ=255)

                                                                   gcgTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCa                      <  1:484836/93‑1 (MQ=255)

                                                                      tatttattTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCAttt                   >  2:4188928/1‑93 (MQ=255)

                                                                       atttatttGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCAtttt                  >  1:6348079/1‑93 (MQ=255)

                                                                       atttatttGTATCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCAtttt                  >  2:5094498/1‑93 (MQ=255)

                                                                        tttatttGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCAttttt                 >  2:1721068/1‑93 (MQ=255)

                                                                        tttatttGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCAttttt                 >  1:5208143/1‑93 (MQ=255)

                                                                         ttatttGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTc                <  2:2074382/93‑1 (MQ=255)

                                                                         ttatttGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTc                <  2:4882736/93‑1 (MQ=255)

                                                                          tatttGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCt               <  2:6381584/93‑1 (MQ=255)

                                                                          tatttGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCt               >  2:7670916/1‑93 (MQ=255)

                                                                           atttGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTg              >  2:1939341/1‑93 (MQ=255)

                                                                            tttGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTgg             >  1:251765/1‑93 (MQ=255)

                                                                            tttGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTgg             >  1:5758269/1‑93 (MQ=255)

                                                                              tGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCa           <  2:4025042/93‑1 (MQ=255)

                                                                               gTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCAt          <  1:4614428/93‑1 (MQ=255)

                                                                                  tCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTc       <  1:3261952/93‑1 (MQ=255)

                                                                                    gCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGt     <  1:2208958/93‑1 (MQ=255)

                                                                                     gccAACCACAGCAATGAAAGCAAAACTAACTACAGGTCAATGCGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGtt    <  2:5189523/92‑1 (MQ=255)

                                                                                       cAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGa  >  1:4169419/1‑93 (MQ=255)

                                                                                       cAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGa  <  2:1531628/93‑1 (MQ=255)

                                                                                       cAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGa  <  2:1182552/93‑1 (MQ=255)

GTACTGATTACCAGTACGATCAGTCATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAATCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGA  >  NC_000913/3185999‑3186178

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TGCGTACTGATTACCAGTACGATCAGTCATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAATCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAG  >  NC_000913/3185996‑3186182

TGCGTACTGATTACCAGTACGATCAGTCATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAAC                                                                                               <  SRR4302543.3346491/94‑1 (MQ=60)

 GCGTACTGATTACCAGTACGATCAGTCATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACC                                                                                              >  SRR4302543.2926145/1‑94 (MQ=60)

 GCGTACTGATTACCAGTACGATCAGTCATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACC                                                                                              <  SRR4302543.7917119/94‑1 (MQ=60)

 GCGTACTGATTACCAGTACGATCAGTCATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACC                                                                                              <  SRR4302543.4809404/94‑1 (MQ=60)

  CGTACTGATTACCAGTACGATCAGTCATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCC                                                                                             >  SRR4302543.866197/1‑94 (MQ=60)

    TACTGATTACCAGTACGATCAGTCATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCA                                                                                           >  SRR4302543.7460120/1‑94 (MQ=60)

     ACTGATTACCAGTACGATCAGTCATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAG                                                                                          <  SRR4302543.1937332/94‑1 (MQ=60)

     ACTGATTACCAGTACGATCAGTCATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAG                                                                                          <  SRR4302543.3576148/94‑1 (MQ=60)

     ACTGATTACCAGTACGATCAGTCATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAG                                                                                          >  SRR4302543.1287937/1‑94 (MQ=60)

      CTGATTACCAGTACGATCAGTCATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGC                                                                                         <  SRR4302543.1766305/94‑1 (MQ=60)

      CTGATTACCAGTACGATCAGTCATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGC                                                                                         >  SRR4302543.1876035/1‑94 (MQ=60)

      CTGATTACCAGTACGATCAGTCATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGC                                                                                         >  SRR4302543.4457402/1‑94 (MQ=60)

      CTGATTACCAGTACGATCAGTCATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGC                                                                                         >  SRR4302543.2732264/1‑94 (MQ=60)

       TGATTACCAGTACGATCAGTCATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCA                                                                                        <  SRR4302543.629156/94‑1 (MQ=60)

        GATTACCAGTACGATCAGTCATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAA                                                                                       >  SRR4302543.7985155/1‑94 (MQ=60)

          TTACCAGTACGATCAGTCATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATG                                                                                     >  SRR4302543.3186492/1‑94 (MQ=60)

          TTACCAGTACGATCAGTCATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATG                                                                                     <  SRR4302543.7653687/94‑1 (MQ=60)

          TTACCAGTACGATCAGTCATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATG                                                                                     <  SRR4302543.1733549/94‑1 (MQ=60)

           TACCAGTACGATCAGTCATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGA                                                                                    >  SRR4302543.937180/1‑94 (MQ=60)

            ACCAGTACGATCAGTCATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAA                                                                                   >  SRR4302543.2083466/1‑94 (MQ=60)

             CCAGTACGATCAGTCATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAAT                                                                                  <  SRR4302543.5157071/94‑1 (MQ=60)

              CAGTACGATCAGTCATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATG                                                                                 <  SRR4302543.6236747/94‑1 (MQ=60)

               AGTACGATCAGTCATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGC                                                                                <  SRR4302543.2942420/94‑1 (MQ=60)

               AGTACGATCAGTCATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGC                                                                                >  SRR4302543.4734527/1‑94 (MQ=60)

                 TACGATCAGTCATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAA                                                                              <  SRR4302543.4516614/94‑1 (MQ=60)

                 TACGATCAGTCATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAA                                                                              >  SRR4302543.3165375/1‑94 (MQ=60)

                 TACGATCAGTCATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAA                                                                              >  SRR4302543.1954085/1‑94 (MQ=60)

                   CGATCAGTCATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAC                                                                            >  SRR4302543.5552999/1‑94 (MQ=60)

                   CGATCAGTCATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAA                                                                            >  SRR4302543.7994166/1‑94 (MQ=60)

                    GATCAGTCATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAAC                                                                           <  SRR4302543.4476284/94‑1 (MQ=60)

                    GATCAGTCATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAAC                                                                           >  SRR4302543.607755/1‑94 (MQ=60)

                    GATCAGTCATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAAC                                                                           >  SRR4302543.903976/1‑94 (MQ=60)

                     ATCAGTCATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACT                                                                          >  SRR4302543.7991986/1‑94 (MQ=60)

                     ATCAGTCATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACT                                                                          >  SRR4302543.105491/1‑94 (MQ=60)

                     ATCAGTCATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACT                                                                          <  SRR4302543.4403837/94‑1 (MQ=60)

                       CAGTCATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAA                                                                        >  SRR4302543.712183/1‑94 (MQ=60)

                        AGTCATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAAC                                                                       <  SRR4302543.2419382/94‑1 (MQ=60)

                         GTCATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACT                                                                      <  SRR4302543.1436466/94‑1 (MQ=60)

                         GTCATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACT                                                                      >  SRR4302543.6272773/1‑94 (MQ=60)

                         ATCATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACT                                                                      <  SRR4302543.10889/94‑1 (MQ=60)

                          TCATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTA                                                                     >  SRR4302543.1018819/1‑94 (MQ=60)

                          GCATTTAAGAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCATCCCCAGCAATGAATGCAAAACTAACTA                                                                     <  SRR4302543.6466727/94‑1 (MQ=60)

                           CATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTAT                                                                    <  SRR4302543.6875275/94‑1 (MQ=60)

                           CATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTAT                                                                    >  SRR4302543.7814082/1‑94 (MQ=60)

                           CATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATACAAAACTAACTAT                                                                    >  SRR4302543.7814081/1‑94 (MQ=60)

                            ATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATA                                                                   <  SRR4302543.7411032/94‑1 (MQ=60)

                            ATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATA                                                                   >  SRR4302543.860470/1‑94 (MQ=60)

                             TTTAACAATGGCAAAAGCCAGGCGACCAGACTGGATTTGCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAG                                                                  <  SRR4302543.583978/94‑1 (MQ=60)

                             TTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAG                                                                  <  SRR4302543.290419/94‑1 (MQ=60)

                             TTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAG                                                                  >  SRR4302543.7586664/1‑94 (MQ=60)

                             TTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAG                                                                  <  SRR4302543.44850/94‑1 (MQ=60)

                              TTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGG                                                                 <  SRR4302543.5175707/94‑1 (MQ=60)

                              TTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGG                                                                 <  SRR4302543.6004871/94‑1 (MQ=60)

                              TTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGG                                                                 <  SRR4302543.6793090/94‑1 (MQ=60)

                              TTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGG                                                                 <  SRR4302543.4552725/94‑1 (MQ=60)

                              TTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGG                                                                 <  SRR4302543.1457244/94‑1 (MQ=60)

                              TTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGG                                                                 <  SRR4302543.957962/94‑1 (MQ=60)

                              TTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGG                                                                 <  SRR4302543.4004798/94‑1 (MQ=60)

                                AACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTC                                                               >  SRR4302543.1035421/1‑94 (MQ=60)

                                AACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTC                                                               >  SRR4302543.1035422/1‑94 (MQ=60)

                                 ACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCA                                                              <  SRR4302543.1513558/94‑1 (MQ=60)

                                  CAATGGCAAAGGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAA                                                             >  SRR4302543.7084917/1‑94 (MQ=60)

                                  CAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAA                                                             <  SRR4302543.4740183/94‑1 (MQ=60)

                                   AATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAAT                                                            >  SRR4302543.3577708/1‑94 (MQ=60)

                                   AATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAAT                                                            >  SRR4302543.7623717/1‑94 (MQ=60)

                                   AATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAAT                                                            <  SRR4302543.7258158/94‑1 (MQ=60)

                                    ATGGCAAAAGCCAGGCGACCAACCTGGCTTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGCATGCAAAACTACCTATAGGTCAATA                                                           >  SRR4302543.876104/1‑94 (MQ=60)

                                    ATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATA                                                           >  SRR4302543.876105/1‑94 (MQ=60)

                                    ATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATA                                                           >  SRR4302543.3845266/1‑94 (MQ=60)

                                    ATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATA                                                           >  SRR4302543.3845265/1‑94 (MQ=60)

                                     GGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATAC                                                          <  SRR4302543.3811562/94‑1 (MQ=60)

                                     AGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATAC                                                          <  SRR4302543.3811561/94‑1 (MQ=60)

                                      GGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACG                                                         <  SRR4302543.5801039/94‑1 (MQ=60)

                                      GGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACG                                                         >  SRR4302543.5893357/1‑94 (MQ=60)

                                      GGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACG                                                         <  SRR4302543.3458456/94‑1 (MQ=60)

                                        CAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGAT                                                       >  SRR4302543.7053983/1‑94 (MQ=60)

                                        CAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGAT                                                       <  SRR4302543.612237/94‑1 (MQ=60)

                                         AAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATA                                                      >  SRR4302543.2722195/1‑94 (MQ=60)

                                         AAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATA                                                      >  SRR4302543.7303229/1‑94 (MQ=60)

                                         AAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATA                                                      >  SRR4302543.104149/1‑94 (MQ=60)

                                         AAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATA                                                      <  SRR4302543.996659/94‑1 (MQ=60)

                                          AAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATAC                                                     <  SRR4302543.5126143/94‑1 (MQ=60)

                                           AAGCCAGGCGACCAGCCTGGATTTTCCGCGTATTTATTTTTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATGCT                                                    <  SRR4302543.4280630/94‑1 (MQ=60)

                                           AAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACT                                                    <  SRR4302543.4280629/94‑1 (MQ=60)

                                           AAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACT                                                    <  SRR4302543.5505736/94‑1 (MQ=60)

                                            AGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTG                                                   <  SRR4302543.3636063/94‑1 (MQ=60)

                                            AGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTG                                                   >  SRR4302543.7480859/1‑94 (MQ=60)

                                            AGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTG                                                   >  SRR4302543.4822588/1‑94 (MQ=60)

                                            AGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTG                                                   >  SRR4302543.6681184/1‑94 (MQ=60)

                                             GCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGA                                                  <  SRR4302543.5708646/94‑1 (MQ=60)

                                              CCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCATAACTAACTATAGGTCAATACGATACTGAA                                                 >  SRR4302543.677275/1‑94 (MQ=60)

                                               CAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAAT                                                <  SRR4302543.3164743/94‑1 (MQ=60)

                                                AGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATC                                               <  SRR4302543.5587707/94‑1 (MQ=60)

                                                AGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATC                                               >  SRR4302543.859421/1‑94 (MQ=60)

                                                AGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATC                                               >  SRR4302543.6412931/1‑94 (MQ=60)

                                                  GCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCT                                             <  SRR4302543.4363087/94‑1 (MQ=60)

                                                  GCGACCAACCGGGATTTTCCGGGTATTTATTTGTTTCCCCCAACCCCAGCAATGAATGCAAACCTAACTATAGGTCAATACGATACTGAATCCT                                             <  SRR4302543.4363089/94‑1 (MQ=60)

                                                   CGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTC                                            >  SRR4302543.2704342/1‑94 (MQ=60)

                                                    GACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAGAACTAACTATAGGTCAATACGATACTGAATCCTCT                                           >  SRR4302543.2960158/1‑94 (MQ=60)

                                                    GACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCT                                           <  SRR4302543.847438/94‑1 (MQ=60)

                                                    GACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCT                                           <  SRR4302543.7405386/94‑1 (MQ=60)

                                                    GACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCT                                           <  SRR4302543.7517637/94‑1 (MQ=60)

                                                    GACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCT                                           >  SRR4302543.4661135/1‑94 (MQ=60)

                                                     ACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTA                                          >  SRR4302543.5015128/1‑94 (MQ=60)

                                                     ACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTA                                          >  SRR4302543.2405626/1‑94 (MQ=60)

                                                      CCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTAT                                         <  SRR4302543.1896869/94‑1 (MQ=60)

                                                       CAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATT                                        <  SRR4302543.3990485/94‑1 (MQ=60)

                                                       CAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATT                                        <  SRR4302543.7963084/94‑1 (MQ=60)

                                                        gtCCTGGATTTTCCGCGTATTTATTTGTATCGCCCAACCCCAGCAATGAATGCAACCCTAACTATCGGTCAATACGATACTGAATCCTCTATAT                                       <  SRR4302543.7087540/92‑1 (MQ=60)

                                                        AACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTT                                       <  SRR4302543.6818396/94‑1 (MQ=60)

                                                        AACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTT                                       <  SRR4302543.3062325/94‑1 (MQ=60)

                                                        AACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTT                                       >  SRR4302543.1662691/1‑94 (MQ=60)

                                                        AACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTT                                       <  SRR4302543.3798670/94‑1 (MQ=60)

                                                          CCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTC                                     >  SRR4302543.5028594/1‑94 (MQ=60)

                                                           CTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCG                                    >  SRR4302543.1362474/1‑94 (MQ=60)

                                                           CTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCG                                    <  SRR4302543.3195165/94‑1 (MQ=60)

                                                           CTGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCG                                    >  SRR4302543.466380/1‑94 (MQ=60)

                                                            TGGATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGA                                   <  SRR4302543.3830100/94‑1 (MQ=60)

                                                              GATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACT                                 <  SRR4302543.3171824/94‑1 (MQ=60)

                                                               ATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTC                                >  SRR4302543.1377326/1‑94 (MQ=60)

                                                               ATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTC                                >  SRR4302543.4854061/1‑94 (MQ=60)

                                                               ATTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTC                                >  SRR4302543.5260844/1‑94 (MQ=60)

                                                                TTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCT                               <  SRR4302543.1111621/94‑1 (MQ=60)

                                                                TTTTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCT                               <  SRR4302543.1789276/94‑1 (MQ=60)

                                                                 TTTCCGCGTATTTATTTGTTGCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTT                              <  SRR4302543.1170503/94‑1 (MQ=60)

                                                                  TTCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTT                             <  SRR4302543.5591400/94‑1 (MQ=60)

                                                                   TCCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTC                            >  SRR4302543.5833033/1‑94 (MQ=60)

                                                                    CCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTACCAATCGGGCAATCCTATACTGACTCCTCTATTTTCGACTCTTTCA                           >  SRR4302543.5358957/1‑94 (MQ=60)

                                                                    CCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCC                           <  SRR4302543.5994520/94‑1 (MQ=60)

                                                                    CCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCC                           >  SRR4302543.4071203/1‑94 (MQ=60)

                                                                    CCGCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCC                           >  SRR4302543.5358956/1‑94 (MQ=60)

                                                                      GCGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCAT                         <  SRR4302543.489320/94‑1 (MQ=60)

                                                                       CGTATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATT                        <  SRR4302543.1107774/94‑1 (MQ=60)

                                                                         TATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTT                      >  SRR4302543.6562890/1‑94 (MQ=60)

                                                                         TATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTT                      >  SRR4302543.456805/1‑94 (MQ=60)

                                                                         TATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTT                      >  SRR4302543.6407767/1‑94 (MQ=60)

                                                                          ATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTT                     <  SRR4302543.5829373/94‑1 (MQ=60)

                                                                          ATTTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTT                     >  SRR4302543.5255077/1‑94 (MQ=60)

                                                                            TTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCT                   <  SRR4302543.7636955/94‑1 (MQ=60)

                                                                            TTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCT                   >  SRR4302543.2116426/1‑94 (MQ=60)

                                                                            TTATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCT                   <  SRR4302543.3237774/94‑1 (MQ=60)

                                                                             TATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTG                  >  SRR4302543.3696891/1‑94 (MQ=60)

                                                                              ATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGG                 >  SRR4302543.5810736/1‑94 (MQ=60)

                                                                              ATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGG                 <  SRR4302543.912559/94‑1 (MQ=60)

                                                                              ATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGG                 >  SRR4302543.253956/1‑94 (MQ=60)

                                                                              ATTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGG                 >  SRR4302543.2022930/1‑94 (MQ=60)

                                                                               TTTGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGC                <  SRR4302543.714919/94‑1 (MQ=60)

                                                                                 TGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCAT              >  SRR4302543.2457960/1‑94 (MQ=60)

                                                                                 TGTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCAT              <  SRR4302543.1450500/94‑1 (MQ=60)

                                                                                  GTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATT             <  SRR4302543.4318737/94‑1 (MQ=60)

                                                                                  GTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATT             >  SRR4302543.5401964/1‑94 (MQ=60)

                                                                                  GTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATT             <  SRR4302543.4656342/94‑1 (MQ=60)

                                                                                  GTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATT             >  SRR4302543.7575966/1‑94 (MQ=60)

                                                                                  GTTTCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATT             >  SRR4302543.503777/1‑94 (MQ=60)

                                                                                     TCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCG          <  SRR4302543.639053/94‑1 (MQ=60)

                                                                                     TCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCG          <  SRR4302543.1651855/94‑1 (MQ=60)

                                                                                     TCGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCG          <  SRR4302543.3291433/94‑1 (MQ=60)

                                                                                      CGCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGT         >  SRR4302543.6131396/1‑94 (MQ=60)

                                                                                       GCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTT        >  SRR4302543.4127545/1‑94 (MQ=60)

                                                                                       GCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTT        >  SRR4302543.413032/1‑94 (MQ=60)

                                                                                       GCCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTT        <  SRR4302543.2228853/94‑1 (MQ=60)

                                                                                        CCCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTG       >  SRR4302543.4112761/1‑94 (MQ=60)

                                                                                         CCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGA      >  SRR4302543.4207178/1‑94 (MQ=60)

                                                                                         CCAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGA      >  SRR4302543.4207179/1‑94 (MQ=60)

                                                                                          CAACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAA     <  SRR4302543.5719854/94‑1 (MQ=60)

                                                                                           AACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAA    <  SRR4302543.6454769/94‑1 (MQ=60)

                                                                                            ACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAA   <  SRR4302543.2015655/94‑1 (MQ=60)

                                                                                            ACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAA   <  SRR4302543.5988216/94‑1 (MQ=60)

                                                                                            ACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAA   <  SRR4302543.261015/94‑1 (MQ=60)

                                                                                            ACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAA   <  SRR4302543.6420974/94‑1 (MQ=60)

                                                                                            ACCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAA   <  SRR4302543.5117833/94‑1 (MQ=60)

                                                                                             CCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAG  <  SRR4302543.7826036/94‑1 (MQ=60)

                                                                                             CCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAG  >  SRR4302543.2935796/1‑94 (MQ=60)

TGCGTACTGATTACCAGTACGATCAGTCATTTAACAATGGCAAAAGCCAGGCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAATCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAG  >  NC_000913/3185996‑3186182

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`