Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1696 279.3 15874187 97.8% 15524954 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,812,035 G→A intergenic (+21/‑86) dut → / → b3641 deoxyuridinetriphosphatase/putative transcriptional regulator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,812,0350GA99.8% 1699.5 / ‑5.7 468intergenic (+21/‑86)dut/b3641deoxyuridinetriphosphatase/putative transcriptional regulator
Reads supporting (aligned to +/- strand):  ref base G (0/1);  new base A (210/256);  total (210/258)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.76e-01

Only 100 of 477 total aligned reads displayed.

TAATCTGGTGGAAGATTTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACGTCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTGTAACATGG  >  NC_000913/3811945‑3812124
                                                                                          |                                                                                         
tattCTGGTGGAAGATTTCGACGCCACCGACCGCGGTTAAGGCGGCTTTGGTCACTCTGGTCGTCATTAACACATACGCATCCGAATAACATc                                                                                         >  2:7026331/4‑93 (MQ=255)
tAATCTGGTGGAAGATTTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATc                                                                                         <  1:2954281/93‑1 (MQ=255)
tAATCTGGTGGAAGATTTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATc                                                                                         <  2:6407098/93‑1 (MQ=255)
 aaTCTGGTGGAAGATTTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCa                                                                                        <  2:4638272/93‑1 (MQ=255)
 aaTCTGGTGGAAGATTTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCa                                                                                        <  1:5976916/93‑1 (MQ=255)
 aaTCTGGTGGAAGATTTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCa                                                                                        >  1:1255225/1‑93 (MQ=255)
  aTCTGGTGGAAGATTTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAAcatcat                                                                                       <  1:1439921/93‑1 (MQ=255)
   tCTGGTGGAAGATTTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATa                                                                                      <  1:1028494/93‑1 (MQ=255)
   tCTGGTGGAAGATTTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATa                                                                                      <  2:3742637/93‑1 (MQ=255)
    cTGGTGGAAGATTTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATaa                                                                                     <  1:793205/93‑1 (MQ=255)
    cTGGTGGAAGATTTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATaa                                                                                     <  2:1557298/93‑1 (MQ=255)
    cTGGTGGAAGATTTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATaa                                                                                     >  1:3316204/1‑93 (MQ=255)
     tggtggAAGATTTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAAc                                                                                    >  1:3209814/1‑93 (MQ=255)
      ggtggAAGATTTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACa                                                                                   <  2:5776814/93‑1 (MQ=255)
      ggtggAAGATTTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACa                                                                                   >  1:3103912/1‑93 (MQ=255)
       gtggAAGATTTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACAt                                                                                  >  2:6584134/1‑93 (MQ=255)
        tggAAGATTTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATa                                                                                 >  1:4868484/1‑93 (MQ=255)
          gAAGATTTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGc                                                                               <  2:3145809/93‑1 (MQ=255)
          gAAGATTTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGc                                                                               <  1:6908088/93‑1 (MQ=255)
          gAAGATTTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGc                                                                               <  2:7555490/93‑1 (MQ=255)
           aaGATTTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGcc                                                                              <  1:4625119/93‑1 (MQ=255)
            aGATTTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCg                                                                             >  1:5297649/1‑93 (MQ=255)
               tttCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCaa                                                                          <  2:4924626/93‑1 (MQ=255)
               tttCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCaa                                                                          >  2:6110465/1‑93 (MQ=255)
                ttCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCaaa                                                                         <  2:2762334/93‑1 (MQ=255)
                ttCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCaaa                                                                         <  2:1945911/93‑1 (MQ=255)
                 tCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAAc                                                                        <  2:5559237/93‑1 (MQ=255)
                  cgccGCTACCGACCGCGGTGAAGGCGGCTTTGGTCACGCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACa                                                                       <  2:308032/90‑1 (MQ=255)
                  cGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACa                                                                       <  2:7310968/93‑1 (MQ=255)
                    aCGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACAtt                                                                     <  1:5521441/93‑1 (MQ=255)
                       ccACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCg                                                                  <  2:5351189/93‑1 (MQ=255)
                             accgCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCg                                                            >  2:4532075/1‑93 (MQ=255)
                             accgCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCg                                                            <  2:1139376/93‑1 (MQ=255)
                               cgcgGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGt                                                          >  2:1854314/1‑93 (MQ=255)
                                gcgGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTc                                                         >  2:1227461/1‑93 (MQ=255)
                                 cgGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCa                                                        >  2:522266/1‑93 (MQ=255)
                                 cgGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCa                                                        <  2:4777427/93‑1 (MQ=255)
                                 cgGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCCGTCa                                                        >  1:1716353/1‑93 (MQ=255)
                                  ggTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCAt                                                       >  1:3586101/1‑93 (MQ=255)
                                   gTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATa                                                      <  2:854895/93‑1 (MQ=255)
                                   gTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATa                                                      >  1:1070547/1‑93 (MQ=255)
                                   gTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATa                                                      <  1:6096222/93‑1 (MQ=255)
                                    tGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAg                                                     >  1:3027902/1‑93 (MQ=255)
                                     gAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGc                                                    <  1:4469384/93‑1 (MQ=255)
                                       aGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGt                                                  >  2:6781140/1‑93 (MQ=255)
                                        ggcggcTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTg                                                 >  1:3856419/1‑93 (MQ=255)
                                        ggcggcTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTg                                                 >  2:623352/1‑93 (MQ=255)
                                          cggcTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTggg                                               <  2:2222967/93‑1 (MQ=255)
                                              tttGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTgcc                                           >  2:1297994/1‑93 (MQ=255)
                                              tttGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTgcc                                           >  1:7617358/1‑93 (MQ=255)
                                                tGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTgccgc                                         <  1:3793007/93‑1 (MQ=255)
                                                 ggTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTgccgcc                                        <  2:5971212/93‑1 (MQ=255)
                                                  gTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCt                                       <  1:6399068/93‑1 (MQ=255)
                                                  gTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCt                                       >  2:2095161/1‑93 (MQ=255)
                                                   tCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTg                                      <  2:5075226/93‑1 (MQ=255)
                                                    cgctctGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTgg                                     <  2:7686580/91‑1 (MQ=255)
                                                    cACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTgg                                     <  1:7145050/93‑1 (MQ=255)
                                                    cACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTgg                                     >  2:4846726/1‑93 (MQ=255)
                                                     aCTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGc                                    >  1:6268732/1‑93 (MQ=255)
                                                       tctGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCaa                                  <  1:7292574/93‑1 (MQ=255)
                                                       tctGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCaa                                  >  2:105815/1‑93 (MQ=255)
                                                       tctGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCaa                                  <  2:2825579/93‑1 (MQ=255)
                                                        ctGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAg                                 <  2:4033257/93‑1 (MQ=255)
                                                         tGGTCGTCTGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGt                                <  2:425880/93‑1 (MQ=255)
                                                         tGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGt                                <  2:2141811/93‑1 (MQ=255)
                                                          ggTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTg                               >  2:2945360/1‑93 (MQ=255)
                                                          ggTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTg                               >  1:6754866/1‑93 (MQ=255)
                                                           gtcgtcAGTAACACATACGCATCCGAATAGCATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGc                              <  1:2670904/93‑1 (MQ=255)
                                                           gtcgtcAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGc                              >  1:3524642/1‑93 (MQ=255)
                                                           gtcgtcAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGc                              <  2:3539872/93‑1 (MQ=255)
                                                            tcgtcAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCt                             >  1:1534795/1‑93 (MQ=255)
                                                             cgtcAGTAACACATACGCATCCGAATAACATCATAACATAGCCCAAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGGAAGTGCtt                            >  1:6569641/1‑93 (MQ=255)
                                                               tcAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTAt                          >  2:7888626/1‑93 (MQ=255)
                                                               tcAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTAt                          >  1:7768149/1‑93 (MQ=255)
                                                                cAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTAtt                         >  1:184343/1‑93 (MQ=255)
                                                                cAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTAtt                         <  1:1933521/93‑1 (MQ=255)
                                                                 aGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTAttt                        >  2:7470588/1‑93 (MQ=255)
                                                                 aGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTAttt                        <  1:2066149/93‑1 (MQ=255)
                                                                 aGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTAttt                        <  1:3366267/93‑1 (MQ=255)
                                                                    aaCACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCa                     <  1:5023236/93‑1 (MQ=255)
                                                                        caTACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAgggg                 >  1:5948782/1‑93 (MQ=255)
                                                                         aTACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAgggga                >  1:788457/1‑92 (MQ=255)
                                                                             gCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTAttt            <  2:1447703/93‑1 (MQ=255)
                                                                             gCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTAttt            <  1:696983/93‑1 (MQ=255)
                                                                               aTCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTg          >  1:4099309/1‑93 (MQ=255)
                                                                               aTCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTg          >  1:5358544/1‑93 (MQ=255)
                                                                               aTCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTg          >  2:2619074/1‑93 (MQ=255)
                                                                                tCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTGt         >  1:4047448/1‑93 (MQ=255)
                                                                                tCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTGt         >  2:7517855/1‑93 (MQ=255)
                                                                                tCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTGt         >  2:3241279/1‑93 (MQ=255)
                                                                                 ccGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTGTa        <  1:748516/93‑1 (MQ=255)
                                                                                   gAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTGTAAc      >  1:1620595/1‑93 (MQ=255)
                                                                                    aaTAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTGTAACa     <  1:4559330/93‑1 (MQ=255)
                                                                                    aaTAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTGTAACa     <  2:3223411/93‑1 (MQ=255)
                                                                                    aaTAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTGTAACa     >  1:7438339/1‑93 (MQ=255)
                                                                                    aaTAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTGTAACa     <  2:3957870/93‑1 (MQ=255)
                                                                                     aTAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTGTAACAt    >  1:5669213/1‑93 (MQ=255)
                                                                                      tAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTGTAACATg   <  1:2531826/93‑1 (MQ=255)
                                                                                       aaCATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTGTAACATgg  <  2:1686412/93‑1 (MQ=255)
                                                                                       aaCATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTGTAACATgg  <  1:219160/93‑1 (MQ=255)
                                                                                          |                                                                                         
TAATCTGGTGGAAGATTTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACGTCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTGTAACATGG  >  NC_000913/3811945‑3812124

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 260 total aligned reads displayed.
ATTTAATCTGGTGGAAGATTTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACGTCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTGTAACATGGCAGA  >  NC_000913/3811942‑3812128
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ATTTAATCTGGTGGAAGATTTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACA                                                                                               <  SRR4302543.1155000/94‑1 (MQ=60)
ATTTAATCTGGTGGAAGATTTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACA                                                                                               >  SRR4302543.6638253/1‑94 (MQ=60)
ATTTAATCTGGTGGAAGATTTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACA                                                                                               <  SRR4302543.1673503/94‑1 (MQ=60)
 TTTAATCTGGTGGAAGATTTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACAT                                                                                              >  SRR4302543.2461436/1‑94 (MQ=60)
 TTTAATCTGGTGGAAGATTTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACAT                                                                                              <  SRR4302543.6856095/94‑1 (MQ=60)
 TTTAATCTGGTGGAAGATTTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACAT                                                                                              <  SRR4302543.6425023/94‑1 (MQ=60)
  TTAATCTGGTGGAAGATTTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATC                                                                                             <  SRR4302543.5991116/94‑1 (MQ=60)
  TTAATCTGGTGGAAGATTTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATC                                                                                             <  SRR4302543.3217586/94‑1 (MQ=60)
   TAATCTGGTGGAAGATTTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCA                                                                                            <  SRR4302543.2444239/94‑1 (MQ=60)
   TAATCTGGTGGAAGATTTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCA                                                                                            >  SRR4302543.1266474/1‑94 (MQ=60)
   TAATCTGGTGGAAGATTTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCA                                                                                            <  SRR4302543.2981105/94‑1 (MQ=60)
   TAATCTGGTGGAAGATTTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCA                                                                                            <  SRR4302543.2981106/94‑1 (MQ=60)
    ACTCTGGTGGAAGATTTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCAT                                                                                           <  SRR4302543.6205327/94‑1 (MQ=60)
    AATCTGGTGGAAGATTTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACTCATACGCATCCGAATAACATCAT                                                                                           <  SRR4302543.106594/94‑1 (MQ=60)
    AATCTGGTGGAAGATTTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCAT                                                                                           <  SRR4302543.3428999/94‑1 (MQ=60)
    AATCTGGTGGAAGATTTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCAT                                                                                           <  SRR4302543.3216559/94‑1 (MQ=60)
    AATCTGGTGGAAGATTTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCAT                                                                                           >  SRR4302543.1063909/1‑94 (MQ=60)
    AATCTGGTGGAAGATTTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCAT                                                                                           <  SRR4302543.3574489/94‑1 (MQ=60)
     ATCTGGTGGAAGATTTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATA                                                                                          >  SRR4302543.814467/1‑94 (MQ=60)
     ATCTGGTGGAAGATTTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATA                                                                                          <  SRR4302543.1452930/94‑1 (MQ=60)
      TCTGGTGGAAGATTTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAA                                                                                         <  SRR4302543.1037605/94‑1 (MQ=60)
      TCTGGTGGAAGATTTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAA                                                                                         >  SRR4302543.3346133/1‑94 (MQ=60)
      TCTGGTGGAAGATTTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAA                                                                                         >  SRR4302543.7308999/1‑94 (MQ=60)
        TGGTGGAAGATTTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACA                                                                                       >  SRR4302543.3131830/1‑94 (MQ=60)
         GGTGGAAGATTTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACAT                                                                                      >  SRR4302543.1567169/1‑94 (MQ=60)
          GTGGAAGATTTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATA                                                                                     >  SRR4302543.4912866/1‑94 (MQ=60)
           TGGAAGATTTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAG                                                                                    <  SRR4302543.7068999/94‑1 (MQ=60)
           TGGAAGATTTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAG                                                                                    <  SRR4302543.1648918/94‑1 (MQ=60)
            TGAAGATTTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGC                                                                                   <  SRR4302543.7458120/94‑1 (MQ=60)
             GAAGATTTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCC                                                                                  <  SRR4302543.6973009/94‑1 (MQ=60)
             GAAGATTTCCACGCCCCCGGCCGGGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCC                                                                                  <  SRR4302543.3856647/94‑1 (MQ=60)
              AAGATTTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCG                                                                                 >  SRR4302543.5345472/1‑94 (MQ=60)
               AGATTTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGC                                                                                >  SRR4302543.4982826/1‑94 (MQ=60)
                GATTTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCA                                                                               >  SRR4302543.5622350/1‑94 (MQ=60)
                GATTTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCA                                                                               >  SRR4302543.2596168/1‑94 (MQ=60)
                 ATTTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAA                                                                              >  SRR4302543.1087868/1‑94 (MQ=60)
                   TTCGACGCCACCGACCGCGGTGAAGGCGTCTTTTGTCGCTCTGGTCGTCAGTAACACATACGCATCCGAATAACAGCATAACATAGCCGCAAAC                                                                            <  SRR4302543.2166540/94‑1 (MQ=60)
                   TTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCTCTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAAC                                                                            <  SRR4302543.3238991/94‑1 (MQ=60)
                   TTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAAC                                                                            >  SRR4302543.1767926/1‑94 (MQ=60)
                     CGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCGCTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACAT                                                                          <  SRR4302543.4796713/94‑1 (MQ=60)
                     CGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACAT                                                                          <  SRR4302543.6152208/94‑1 (MQ=60)
                     CGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACAT                                                                          >  SRR4302543.3119215/1‑94 (MQ=60)
                     CGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACAT                                                                          <  SRR4302543.5656369/94‑1 (MQ=60)
                      GACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATT                                                                         <  SRR4302543.3560440/94‑1 (MQ=60)
                       ACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTT                                                                        <  SRR4302543.5571595/94‑1 (MQ=60)
                       ACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTT                                                                        <  SRR4302543.685309/94‑1 (MQ=60)
                        CGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTC                                                                       <  SRR4302543.3923985/94‑1 (MQ=60)
                        CGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTC                                                                       <  SRR4302543.7256590/94‑1 (MQ=60)
                         GCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCG                                                                      >  SRR4302543.6015123/1‑94 (MQ=60)
                          CCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGT                                                                     >  SRR4302543.5520509/1‑94 (MQ=60)
                          CCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGT                                                                     >  SRR4302543.4092101/1‑94 (MQ=60)
                           CACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTT                                                                    >  SRR4302543.7030078/1‑94 (MQ=60)
                           CACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGCCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCAGCAAACATTTactt                                                                    >  SRR4302543.550303/1‑90 (MQ=60)
                            ACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTT                                                                   >  SRR4302543.193337/1‑94 (MQ=60)
                            ACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTT                                                                   <  SRR4302543.3751424/94‑1 (MQ=60)
                            ACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTT                                                                   >  SRR4302543.5032891/1‑94 (MQ=60)
                            ACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTT                                                                   >  SRR4302543.1699139/1‑94 (MQ=60)
                             CCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTG                                                                  <  SRR4302543.7518987/94‑1 (MQ=60)
                             CCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTG                                                                  <  SRR4302543.7917341/94‑1 (MQ=60)
                              CGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGC                                                                 >  SRR4302543.7578149/1‑94 (MQ=60)
                               GACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCG                                                                >  SRR4302543.7313198/1‑94 (MQ=60)
                               GACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCG                                                                >  SRR4302543.3110691/1‑94 (MQ=60)
                               GACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCG                                                                >  SRR4302543.3394710/1‑94 (MQ=60)
                                ACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGG                                                               <  SRR4302543.7184138/94‑1 (MQ=60)
                                 CCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGT                                                              <  SRR4302543.4404827/94‑1 (MQ=60)
                                  CGCGGTGAAGGCGGCTTTGGTCACTCTGGGCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTC                                                             <  SRR4302543.798697/94‑1 (MQ=60)
                                   GCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCCGTCA                                                            >  SRR4302543.1731689/1‑94 (MQ=60)
                                    CGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCAT                                                           <  SRR4302543.2395365/94‑1 (MQ=60)
                                    CGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCAT                                                           >  SRR4302543.3617774/1‑94 (MQ=60)
                                     GGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATA                                                          <  SRR4302543.6302826/94‑1 (MQ=60)
                                     GGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATA                                                          >  SRR4302543.4240402/1‑94 (MQ=60)
                                      GTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAG                                                         <  SRR4302543.1354487/94‑1 (MQ=60)
                                      GTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAG                                                         >  SRR4302543.5212570/1‑94 (MQ=60)
                                      GTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAG                                                         <  SRR4302543.1534889/94‑1 (MQ=60)
                                      GTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAG                                                         <  SRR4302543.1534890/94‑1 (MQ=60)
                                      GTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAG                                                         <  SRR4302543.6153987/94‑1 (MQ=60)
                                      GTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAG                                                         >  SRR4302543.3055257/1‑94 (MQ=60)
                                      GTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCACCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAG                                                         <  SRR4302543.467246/94‑1 (MQ=60)
                                       TGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGC                                                        <  SRR4302543.1685448/94‑1 (MQ=60)
                                        GAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCG                                                       >  SRR4302543.3628400/1‑94 (MQ=60)
                                        GAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCG                                                       >  SRR4302543.4654164/1‑94 (MQ=60)
                                         AAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGT                                                      >  SRR4302543.5903896/1‑94 (MQ=60)
                                         AAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGT                                                      <  SRR4302543.295788/94‑1 (MQ=60)
                                         AAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGT                                                      >  SRR4302543.1093130/1‑94 (MQ=60)
                                         AAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGT                                                      >  SRR4302543.671178/1‑94 (MQ=60)
                                          AGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTG                                                     >  SRR4302543.3890491/1‑94 (MQ=60)
                                          AGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTG                                                     <  SRR4302543.1224661/94‑1 (MQ=60)
                                           GGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGG                                                    >  SRR4302543.688253/1‑94 (MQ=60)
                                           GGCGGCTTGGTTCACTCTGGGCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGG                                                    <  SRR4302543.2144920/94‑1 (MQ=60)
                                            GCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGG                                                   <  SRR4302543.1451421/94‑1 (MQ=60)
                                            GCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGG                                                   >  SRR4302543.1534057/1‑94 (MQ=60)
                                             CGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGT                                                  >  SRR4302543.3830679/1‑94 (MQ=60)
                                             CGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGT                                                  <  SRR4302543.4541072/94‑1 (MQ=60)
                                              GGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTG                                                 >  SRR4302543.5839853/1‑94 (MQ=60)
                                               GCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGC                                                <  SRR4302543.7038727/94‑1 (MQ=60)
                                                CTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCC                                               >  SRR4302543.6340788/1‑94 (MQ=60)
                                                CTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCC                                               >  SRR4302543.7689662/1‑94 (MQ=60)
                                                CTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCC                                               <  SRR4302543.544505/94‑1 (MQ=60)
                                                   TGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCC                                            <  SRR4302543.3826422/94‑1 (MQ=60)
                                                    GGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCT                                           <  SRR4302543.7997184/94‑1 (MQ=60)
                                                    GGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCT                                           <  SRR4302543.5371622/94‑1 (MQ=60)
                                                     GTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTG                                          <  SRR4302543.3200547/94‑1 (MQ=60)
                                                     GTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTG                                          <  SRR4302543.6459310/94‑1 (MQ=60)
                                                      TCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGG                                         <  SRR4302543.6340064/94‑1 (MQ=60)
                                                       CACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGC                                        >  SRR4302543.6327841/1‑94 (MQ=60)
                                                       CACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGC                                        <  SRR4302543.7214488/94‑1 (MQ=60)
                                                       CACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGC                                        >  SRR4302543.3461050/1‑94 (MQ=60)
                                                        ACTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCA                                       <  SRR4302543.93770/94‑1 (MQ=60)
                                                         CTCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAA                                      >  SRR4302543.6983220/1‑94 (MQ=60)
                                                          TCTGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAG                                     <  SRR4302543.7541834/94‑1 (MQ=60)
                                                          TCTGGTCATCAGTAACACATACGCATCGGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAG                                     <  SRR4302543.5873211/94‑1 (MQ=60)
                                                            TGGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTG                                   >  SRR4302543.7175145/1‑94 (MQ=60)
                                                             GGTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGC                                  >  SRR4302543.3556069/1‑94 (MQ=60)
                                                              GTCGTCAGTAACACATACGCATCCGAATAGCATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCT                                 <  SRR4302543.2695122/94‑1 (MQ=60)
                                                              GTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCT                                 >  SRR4302543.4093813/1‑94 (MQ=60)
                                                              GTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCT                                 <  SRR4302543.2695121/94‑1 (MQ=60)
                                                              GTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCT                                 <  SRR4302543.3042728/94‑1 (MQ=60)
                                                              GTCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCT                                 <  SRR4302543.407111/94‑1 (MQ=60)
                                                               TCGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCCAAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGGAAGTGCTT                                >  SRR4302543.6631489/1‑94 (MQ=60)
                                                                CGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTA                               <  SRR4302543.3292343/94‑1 (MQ=60)
                                                                CGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTA                               >  SRR4302543.6027331/1‑94 (MQ=60)
                                                                CGTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTA                               <  SRR4302543.5221390/94‑1 (MQ=60)
                                                                 GTCAGTAACCCATGCGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTAT                              <  SRR4302543.1963607/94‑1 (MQ=60)
                                                                 GTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTAT                              >  SRR4302543.669872/1‑94 (MQ=60)
                                                                 GTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTAT                              >  SRR4302543.1872885/1‑94 (MQ=60)
                                                                 GTCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTAT                              >  SRR4302543.7841438/1‑94 (MQ=60)
                                                                  TGAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATT                             <  SRR4302543.6845242/94‑1 (MQ=60)
                                                                  TCAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATT                             >  SRR4302543.185911/1‑94 (MQ=60)
                                                                   CAGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTT                            <  SRR4302543.1950908/94‑1 (MQ=60)
                                                                    AGTAACACATACGCATCCGAATTACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTT                           >  SRR4302543.4624204/1‑94 (MQ=60)
                                                                    AGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTT                           >  SRR4302543.4547786/1‑94 (MQ=60)
                                                                    AGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTT                           >  SRR4302543.5377038/1‑94 (MQ=60)
                                                                    AGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTT                           <  SRR4302543.2084622/94‑1 (MQ=60)
                                                                    AGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTT                           <  SRR4302543.3396519/94‑1 (MQ=60)
                                                                    AGTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTT                           >  SRR4302543.5648782/1‑94 (MQ=60)
                                                                     GTAACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTC                          >  SRR4302543.6604598/1‑94 (MQ=60)
                                                                       AACACATACGCATCCGAATAACATCATACCATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAG                        <  SRR4302543.1923585/94‑1 (MQ=60)
                                                                       AACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAG                        <  SRR4302543.5068950/94‑1 (MQ=60)
                                                                       AACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAG                        <  SRR4302543.7771507/94‑1 (MQ=60)
                                                                        ACACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGG                       <  SRR4302543.7586319/94‑1 (MQ=60)
                                                                         CACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGG                      <  SRR4302543.6989629/94‑1 (MQ=60)
                                                                         CACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGG                      >  SRR4302543.3282179/1‑94 (MQ=60)
                                                                          ACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCACGTGCTTATTTTCAGGGG                     >  SRR4302543.6003224/1‑94 (MQ=60)
                                                                          ACATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGG                     >  SRR4302543.4073553/1‑94 (MQ=60)
                                                                           CATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGT                    >  SRR4302543.3506335/1‑94 (MQ=60)
                                                                           CATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGT                    >  SRR4302543.795392/1‑94 (MQ=60)
                                                                           CATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGA                    >  SRR4302543.795393/1‑94 (MQ=60)
                                                                            ATACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTA                   >  SRR4302543.1585538/1‑94 (MQ=60)
                                                                             TACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTAT                  <  SRR4302543.1959216/94‑1 (MQ=60)
                                                                             TACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTAT                  <  SRR4302543.2665907/94‑1 (MQ=60)
                                                                             TACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTAT                  <  SRR4302543.6608597/94‑1 (MQ=60)
                                                                              caccataCGAATAACATCATAACATAGCCGCAAACATTTCCTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATT                 <  SRR4302543.82961/87‑1 (MQ=60)
                                                                              ACGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATT                 >  SRR4302543.1822703/1‑94 (MQ=60)
                                                                              ACGCATCCGAATAACATCATAACATAGCCCCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCACGTGCTTATTTTCAGGGGTATT                 >  SRR4302543.1048836/1‑94 (MQ=60)
                                                                               CGCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTT                >  SRR4302543.6390050/1‑94 (MQ=60)
                                                                                GCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTT               >  SRR4302543.4619661/1‑94 (MQ=60)
                                                                                GCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTT               <  SRR4302543.703364/94‑1 (MQ=60)
                                                                                GCATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTT               >  SRR4302543.7980959/1‑94 (MQ=60)
                                                                                 CATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTG              >  SRR4302543.4136142/1‑94 (MQ=60)
                                                                                 CATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTG              >  SRR4302543.5407041/1‑94 (MQ=60)
                                                                                 CATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTG              <  SRR4302543.4528754/94‑1 (MQ=60)
                                                                                 CATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTG              >  SRR4302543.4715838/1‑94 (MQ=60)
                                                                                 CATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTG              >  SRR4302543.6071296/1‑94 (MQ=60)
                                                                                 CATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGAGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTG              >  SRR4302543.1451052/1‑94 (MQ=60)
                                                                                  ATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTGT             >  SRR4302543.306367/1‑94 (MQ=60)
                                                                                  ATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTGT             >  SRR4302543.4083669/1‑94 (MQ=60)
                                                                                  ATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTGT             <  SRR4302543.173212/94‑1 (MQ=60)
                                                                                  ATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTGT             >  SRR4302543.1582450/1‑94 (MQ=60)
                                                                                  ATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTGT             >  SRR4302543.6066163/1‑94 (MQ=60)
                                                                                  ATCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTATCAGGGGTATTTTGT             >  SRR4302543.4121562/1‑94 (MQ=60)
                                                                                   TCCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTGTA            >  SRR4302543.7444515/1‑94 (MQ=60)
                                                                                    CCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTGTAA           <  SRR4302543.755166/94‑1 (MQ=60)
                                                                                    CCGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTGTAA           >  SRR4302543.2695226/1‑94 (MQ=60)
                                                                                     CGAATAACATCATAACATAGCCGCAAACATTTCGTTTTCGGTCATAGCGTGGGTGCCGCCTGGCCAGTGCTTATTTTCTGGGGTATTTTGTAAC          >  SRR4302543.3179673/1‑94 (MQ=60)
                                                                                     CGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTGTAAC          >  SRR4302543.2847940/1‑94 (MQ=60)
                                                                                     CGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTGTAAC          <  SRR4302543.6276872/94‑1 (MQ=60)
                                                                                     CGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTGTAAC          >  SRR4302543.6571820/1‑94 (MQ=60)
                                                                                     CGAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTGTAAC          >  SRR4302543.3378798/1‑94 (MQ=60)
                                                                                      GAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTCTTTTGTAACA         >  SRR4302543.7509643/1‑94 (MQ=60)
                                                                                      GAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTGTAACA         <  SRR4302543.7719424/94‑1 (MQ=60)
                                                                                      GAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTGTAACA         >  SRR4302543.7509640/1‑94 (MQ=60)
                                                                                      GAATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTGTAACA         >  SRR4302543.2423628/1‑94 (MQ=60)
                                                                                       AATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTTCTTATTTTCAGGGGTATTTTGTAACAT        <  SRR4302543.4336328/94‑1 (MQ=60)
                                                                                       AATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTGTAACAT        >  SRR4302543.5720952/1‑94 (MQ=60)
                                                                                       AATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTGTAACAT        <  SRR4302543.7481714/94‑1 (MQ=60)
                                                                                       AATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTGTAACAT        <  SRR4302543.4600836/94‑1 (MQ=60)
                                                                                       AATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTGTAACAT        <  SRR4302543.3600609/94‑1 (MQ=60)
                                                                                        ATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTGTAACATG       <  SRR4302543.3818441/94‑1 (MQ=60)
                                                                                        ATAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTGTAACATG       >  SRR4302543.2149114/1‑94 (MQ=60)
                                                                                         TAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTGTAACATGG      >  SRR4302543.5065369/1‑94 (MQ=60)
                                                                                         TAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTGTAACATGG      >  SRR4302543.7860907/1‑94 (MQ=60)
                                                                                         TAACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTGTAACATGG      <  SRR4302543.7660261/94‑1 (MQ=60)
                                                                                          AACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTGTAACATGGC     <  SRR4302543.221055/94‑1 (MQ=60)
                                                                                          AACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTGTAACATGGC     >  SRR4302543.5166714/1‑94 (MQ=60)
                                                                                          AACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTGTAACATGGC     >  SRR4302543.5180571/1‑94 (MQ=60)
                                                                                           ACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTGTAACATGGCA    <  SRR4302543.2660771/94‑1 (MQ=60)
                                                                                           ACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTGTAACATGGCA    <  SRR4302543.7968513/94‑1 (MQ=60)
                                                                                           ACATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTGTAACATGGCA    >  SRR4302543.5392800/1‑94 (MQ=60)
                                                                                            CATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTGTAACATGGCAG   <  SRR4302543.1197880/94‑1 (MQ=60)
                                                                                             ATCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTGTAACATGGCAGA  >  SRR4302543.4746755/1‑94 (MQ=60)
                                                                                             |                                                                                             
ATTTAATCTGGTGGAAGATTTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACGTCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTGTAACATGGCAGA  >  NC_000913/3811942‑3812128

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑