Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1696 279.3 15874187 97.8% 15524954 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,847,491 T→C L91L (TTA→TTG)  b3668 ← sensor histidine protein kinase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,847,4910TC99.5% 1268.1 / ‑3.6 399L91L (TTA→TTG) b3668sensor histidine protein kinase
Reads supporting (aligned to +/- strand):  ref base T (1/1);  new base C (209/188);  total (210/189)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.31e-01

Only 100 of 410 total aligned reads displayed.

CGCCGTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGCCCAGCAATAC  >  NC_000913/3847401‑3847580
                                                                                          |                                                                                         
cgccgTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCaa                                                                                         <  2:1642730/93‑1 (MQ=255)
ccccgTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCaa                                                                                         <  2:3589507/91‑1 (MQ=255)
 gccgTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCaaa                                                                                        >  2:2255612/1‑93 (MQ=255)
 gccgTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCaaa                                                                                        >  2:667877/1‑93 (MQ=255)
  ccgTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAAc                                                                                       <  1:2457046/93‑1 (MQ=255)
   cgTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACt                                                                                      >  2:1429184/1‑93 (MQ=255)
    gTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTa                                                                                     >  2:1216269/1‑93 (MQ=255)
    gTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTa                                                                                     >  2:5705991/1‑93 (MQ=255)
     ttAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTAc                                                                                    >  2:3221459/1‑93 (MQ=255)
     ttAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTAc                                                                                    >  1:2275643/1‑93 (MQ=255)
     gtAACGCCTCCCCCTGTAACAGCAAGGTGCCCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTAc                                                                                    <  1:1345612/92‑1 (MQ=255)
      tAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTAcc                                                                                   >  1:3607298/1‑93 (MQ=255)
       aaCGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCg                                                                                  <  2:6064454/93‑1 (MQ=255)
       aaCGCCGACCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCg                                                                                  >  2:7761713/1‑93 (MQ=255)
        aCGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGa                                                                                 <  1:6513979/93‑1 (MQ=255)
        aCGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGa                                                                                 <  1:2537562/93‑1 (MQ=255)
         acccgccCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGat                                                                                <  1:6851246/91‑1 (MQ=255)
          gccgccCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGatc                                                                               <  1:4318002/93‑1 (MQ=255)
          gccgccCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGatc                                                                               <  1:7527013/93‑1 (MQ=255)
           ccgccCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGatca                                                                              <  2:1868681/93‑1 (MQ=255)
             gccCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGatcatc                                                                            <  1:2352932/93‑1 (MQ=255)
               ccccTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCaa                                                                          >  2:4692832/1‑93 (MQ=255)
                cccTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAAt                                                                         >  1:3253392/1‑93 (MQ=255)
                cccTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAAt                                                                         <  1:1318974/93‑1 (MQ=255)
                 ccTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATa                                                                        >  1:7128720/1‑93 (MQ=255)
                 ccTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATa                                                                        >  2:1054703/1‑93 (MQ=255)
                 ccTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATa                                                                        >  2:3463635/1‑93 (MQ=255)
                  cTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATaa                                                                       <  2:4892987/93‑1 (MQ=255)
                  cTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATaa                                                                       <  2:4486172/93‑1 (MQ=255)
                   tGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAAc                                                                      >  1:7243367/1‑93 (MQ=255)
                   tGTAACAGCAAGGTGCGCCAGCCACGCTGATTGCGATAGCGCGAGATCAGCGCCACTGGCAGTAACGTCAGCAAACTACCGATCATCAATaaa                                                                      >  2:215275/1‑92 (MQ=255)
                    gTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACg                                                                     <  2:6661110/93‑1 (MQ=255)
                    gTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGACCAGCGCTACGGGCAGTAACGTCAGCAAACCACAGATCATCAATAACg                                                                     >  1:2004618/1‑93 (MQ=255)
                     tAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACgg                                                                    >  1:1006402/1‑93 (MQ=255)
                     tAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACgg                                                                    <  2:2372830/93‑1 (MQ=255)
                     tAACAGCAAGGTGCGCCAGACACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACgg                                                                    <  2:5229041/93‑1 (MQ=255)
                      aaCAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGa                                                                   <  2:2858157/93‑1 (MQ=255)
                         aGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGaaaa                                                                >  1:276777/1‑93 (MQ=255)
                          gCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAAt                                                               >  1:4003257/1‑93 (MQ=255)
                          gCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAAt                                                               >  1:6311340/1‑93 (MQ=255)
                            caGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAGCGTCAGCAAACTACCGATCATCAATAACGGAAAATgg                                                             <  1:7803760/92‑1 (MQ=255)
                            aaGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATgg                                                             >  1:3934985/1‑93 (MQ=255)
                            aaGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATgg                                                             >  1:2896599/1‑93 (MQ=255)
                            aaGGTGCGCCAGTCACGCTGATGACGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATgg                                                             <  2:5406850/93‑1 (MQ=255)
                             aGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATggg                                                            >  1:1439891/1‑93 (MQ=255)
                              ggTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGt                                                           >  1:4871353/1‑93 (MQ=255)
                              ggTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGt                                                           >  1:423254/1‑93 (MQ=255)
                               gTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGtt                                                          <  2:2710146/93‑1 (MQ=255)
                               gTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGtt                                                          <  2:3141852/93‑1 (MQ=255)
                                  cgcCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTaaa                                                       <  1:4112397/93‑1 (MQ=255)
                                   gcCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAac                                                      <  1:3073368/93‑1 (MQ=255)
                                   gcCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAac                                                      <  1:5695295/93‑1 (MQ=255)
                                    ccAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAacc                                                     >  1:5596186/1‑93 (MQ=255)
                                     cAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAaccg                                                    >  2:1167013/1‑93 (MQ=255)
                                      aGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAaccga                                                   >  1:3676424/1‑93 (MQ=255)
                                       gTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAaccgac                                                  <  2:7631229/93‑1 (MQ=255)
                                        tCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAaccgacc                                                 >  1:4592386/1‑93 (MQ=255)
                                           cGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGcc                                              <  2:4308296/93‑1 (MQ=255)
                                            gCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCt                                             >  1:4793048/1‑93 (MQ=255)
                                             cTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTg                                            >  1:4485947/1‑93 (MQ=255)
                                             cTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTg                                            >  2:6997665/1‑93 (MQ=255)
                                              tGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGCCCGCCtcc                                           >  1:5287366/1‑91 (MQ=255)
                                               gATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCg                                          <  1:160376/93‑1 (MQ=255)
                                                aTGGCGATAGCGCGAGATGAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAGCCGACCGCCTGCGt                                         <  2:6453868/93‑1 (MQ=255)
                                                aTGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGt                                         >  1:3467303/1‑93 (MQ=255)
                                                 tGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGtt                                        <  2:5526816/93‑1 (MQ=255)
                                                 tGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGtt                                        <  2:2987167/93‑1 (MQ=255)
                                                     gATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGcc                                    >  1:7610370/1‑93 (MQ=255)
                                                      aTAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAACCTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCa                                   <  2:7794603/93‑1 (MQ=255)
                                                      aTAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCa                                   >  1:531181/1‑93 (MQ=255)
                                                       tAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAg                                  <  2:4409248/93‑1 (MQ=255)
                                                        aGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAACCCGACCGCCTGCGTTAGCCAGt                                 <  1:3803077/93‑1 (MQ=255)
                                                           gcgAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTaaa                              <  2:7678641/93‑1 (MQ=255)
                                                           gcgAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTaaa                              >  2:2074593/1‑93 (MQ=255)
                                                             gagaTCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATc                            <  1:59130/93‑1 (MQ=255)
                                                              agaTCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATca                           >  1:7460720/1‑93 (MQ=255)
                                                              agaTCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATca                           <  1:1055669/93‑1 (MQ=255)
                                                              agaTCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATca                           <  1:5228708/93‑1 (MQ=255)
                                                                aTCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATcagc                         <  2:2522797/93‑1 (MQ=255)
                                                                  cAGCGTTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATcagcag                       <  1:6641226/93‑1 (MQ=255)
                                                                    gcgcTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGcc                     >  2:3844676/1‑93 (MQ=255)
                                                                    gcgcTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGcc                     >  1:4997280/1‑93 (MQ=255)
                                                                      gcTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCAc                   <  1:6918568/93‑1 (MQ=255)
                                                                       cTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACt                  >  2:7386510/1‑93 (MQ=255)
                                                                        tACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTc                 >  1:6767973/1‑93 (MQ=255)
                                                                        tACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTc                 >  1:5093906/1‑93 (MQ=255)
                                                                        tACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTc                 >  1:1130083/1‑93 (MQ=255)
                                                                        tACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTc                 >  2:680649/1‑93 (MQ=255)
                                                                         aCGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTcc                <  2:7151268/93‑1 (MQ=255)
                                                                         aCGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTcc                <  1:1699733/93‑1 (MQ=255)
                                                                          cGGGCAGTAACGTCAGCACACTACCGCTCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTccc               >  2:5951144/1‑92 (MQ=255)
                                                                             gCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCgcgc            <  2:6258596/93‑1 (MQ=255)
                                                                               aGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGccc          >  2:5368940/1‑93 (MQ=255)
                                                                               aGTAACGTCAGCAAACTACCCATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGccc          >  2:1589358/1‑93 (MQ=255)
                                                                                gTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGCCCa         >  2:6363418/1‑93 (MQ=255)
                                                                                gTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGCCCa         >  1:302379/1‑93 (MQ=255)
                                                                                  aaCGTCAGCAATCTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGCCCAga       >  2:3999594/1‑92 (MQ=255)
                                                                                     gTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGCCCAGCAAt    >  1:3385572/1‑93 (MQ=255)
                                                                                      tCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGCCCAGCAATa   <  1:1822323/93‑1 (MQ=255)
                                                                                      tCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGCCCAGCAATa   >  1:6092636/1‑93 (MQ=255)
                                                                                          |                                                                                         
CGCCGTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGCCCAGCAATAC  >  NC_000913/3847401‑3847580

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 235 total aligned reads displayed.
CGCCGCCGTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGCCCAGCAATACGGGC  >  NC_000913/3847398‑3847584
                                                                                             |                                                                                             
CGCCGCCGTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGC                                                                                               >  SRR4302543.3064056/1‑94 (MQ=60)
CGCCGCCGTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGC                                                                                               <  SRR4302543.1915640/94‑1 (MQ=60)
CGCCGCCGTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGC                                                                                               <  SRR4302543.7165053/94‑1 (MQ=60)
 GCCGCCGTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCA                                                                                              >  SRR4302543.2571958/1‑94 (MQ=60)
 GCCGCCGTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCA                                                                                              >  SRR4302543.1207825/1‑94 (MQ=60)
 CCCGCCGTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCA                                                                                              <  SRR4302543.2367155/94‑1 (MQ=60)
  CCGCCGTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAA                                                                                             >  SRR4302543.6698305/1‑94 (MQ=60)
   CGCCGTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAA                                                                                            >  SRR4302543.3629094/1‑94 (MQ=60)
   CGCCGTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAA                                                                                            >  SRR4302543.5044871/1‑94 (MQ=60)
    GCCGTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAAC                                                                                           <  SRR4302543.1340067/94‑1 (MQ=60)
    CCCGTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAAC                                                                                           <  SRR4302543.661895/94‑1 (MQ=60)
     CCGTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACT                                                                                          >  SRR4302543.2530835/1‑94 (MQ=60)
      CGTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTA                                                                                         >  SRR4302543.4014551/1‑94 (MQ=60)
      CGTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTA                                                                                         >  SRR4302543.1102465/1‑94 (MQ=60)
      CGTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTA                                                                                         >  SRR4302543.3956618/1‑94 (MQ=60)
       GTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTAC                                                                                        >  SRR4302543.244910/1‑94 (MQ=60)
       GTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTAC                                                                                        <  SRR4302543.3481011/94‑1 (MQ=60)
       GTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTAC                                                                                        >  SRR4302543.2296457/1‑94 (MQ=60)
       GTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTAC                                                                                        >  SRR4302543.3646578/1‑94 (MQ=60)
       GTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTAC                                                                                        >  SRR4302543.5330625/1‑94 (MQ=60)
       GTTAACGCCGCCCCCTGTAACAGCAAGGTGCACCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTAC                                                                                        >  SRR4302543.1172125/1‑94 (MQ=60)
        TTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACC                                                                                       >  SRR4302543.5085921/1‑94 (MQ=60)
        TTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACC                                                                                       <  SRR4302543.5664184/94‑1 (MQ=60)
        GTAACGCCTCCCCCTGTAACAGCAAGGTGCCCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACC                                                                                       <  SRR4302543.1357639/94‑1 (MQ=60)
         TAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCG                                                                                      >  SRR4302543.5913572/1‑94 (MQ=60)
         TAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCG                                                                                      >  SRR4302543.3229599/1‑94 (MQ=60)
           ACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGAT                                                                                    <  SRR4302543.2560682/94‑1 (MQ=60)
           ACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGAT                                                                                    <  SRR4302543.6575336/94‑1 (MQ=60)
            acCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATC                                                                                   <  SRR4302543.6915868/92‑1 (MQ=60)
            CGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATC                                                                                   >  SRR4302543.1676256/1‑94 (MQ=60)
            CGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATC                                                                                   >  SRR4302543.4894633/1‑94 (MQ=60)
             GCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCA                                                                                  <  SRR4302543.7598821/94‑1 (MQ=60)
             GCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCA                                                                                  <  SRR4302543.4357215/94‑1 (MQ=60)
              CCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCAT                                                                                 <  SRR4302543.7203773/94‑1 (MQ=60)
              CCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCAT                                                                                 <  SRR4302543.5340068/94‑1 (MQ=60)
               CGCCCCCTGTAACAGCACGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATC                                                                                <  SRR4302543.4082553/94‑1 (MQ=60)
               CGCCCCCTGTAACAGCAAGGTGCGCCAGTCCCGCTGATGGCGATAGCGCGCGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATC                                                                                <  SRR4302543.5720367/94‑1 (MQ=60)
               CGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATC                                                                                <  SRR4302543.4082554/94‑1 (MQ=60)
                GCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCA                                                                               <  SRR4302543.2374273/94‑1 (MQ=60)
                 CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAA                                                                              <  SRR4302543.6974625/94‑1 (MQ=60)
                  CCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAAT                                                                             >  SRR4302543.184546/1‑94 (MQ=60)
                   CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATA                                                                            >  SRR4302543.7197995/1‑94 (MQ=60)
                   CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATA                                                                            >  SRR4302543.5780427/1‑94 (MQ=60)
                   CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATA                                                                            >  SRR4302543.7308010/1‑94 (MQ=60)
                    CCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAA                                                                           <  SRR4302543.2373534/94‑1 (MQ=60)
                    CCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAA                                                                           >  SRR4302543.3283571/1‑94 (MQ=60)
                    CCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAA                                                                           >  SRR4302543.4627923/1‑94 (MQ=60)
                    CCTGTAACAGCAAGCTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAA                                                                           <  SRR4302543.4973440/94‑1 (MQ=60)
                     CTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAAC                                                                          <  SRR4302543.6608464/94‑1 (MQ=60)
                     CTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAAC                                                                          <  SRR4302543.2991346/94‑1 (MQ=60)
                     CTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAAC                                                                          <  SRR4302543.6733253/94‑1 (MQ=60)
                     CTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAAC                                                                          <  SRR4302543.5419213/94‑1 (MQ=60)
                     CTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAAC                                                                          >  SRR4302543.1765105/1‑94 (MQ=60)
                     CTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAAC                                                                          >  SRR4302543.7313458/1‑94 (MQ=60)
                      TGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACG                                                                         >  SRR4302543.1733681/1‑94 (MQ=60)
                      TGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACG                                                                         <  SRR4302543.6521574/94‑1 (MQ=60)
                      TGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGACCAGCGCTACGGGCAGTAACGTCAGCAAACCACAGATCATCAATAACG                                                                         >  SRR4302543.2022628/1‑94 (MQ=60)
                       GTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGG                                                                        >  SRR4302543.6188885/1‑94 (MQ=60)
                       GTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGG                                                                        >  SRR4302543.4853095/1‑94 (MQ=60)
                       GTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGG                                                                        <  SRR4302543.1017724/94‑1 (MQ=60)
                       GTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGG                                                                        >  SRR4302543.1015305/1‑94 (MQ=60)
                        TAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGA                                                                       >  SRR4302543.7415352/1‑94 (MQ=60)
                        TAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGA                                                                       >  SRR4302543.5121120/1‑94 (MQ=60)
                        TAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGA                                                                       <  SRR4302543.6969955/94‑1 (MQ=60)
                         AACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAA                                                                      >  SRR4302543.7043716/1‑94 (MQ=60)
                          ACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAA                                                                     >  SRR4302543.6335716/1‑94 (MQ=60)
                          ACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAA                                                                     <  SRR4302543.4450140/94‑1 (MQ=60)
                           CAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAA                                                                    >  SRR4302543.279222/1‑94 (MQ=60)
                           CAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAA                                                                    >  SRR4302543.7644251/1‑94 (MQ=60)
                           CAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAA                                                                    >  SRR4302543.3891290/1‑94 (MQ=60)
                            AGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAAT                                                                   <  SRR4302543.1676361/94‑1 (MQ=60)
                            AGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAAT                                                                   >  SRR4302543.6370696/1‑94 (MQ=60)
                            AGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAAT                                                                   <  SRR4302543.7802126/94‑1 (MQ=60)
                            AGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAAT                                                                   >  SRR4302543.4038977/1‑94 (MQ=60)
                            AGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAAT                                                                   <  SRR4302543.3133769/94‑1 (MQ=60)
                            AGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAAT                                                                   <  SRR4302543.4413999/94‑1 (MQ=60)
                              CAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGG                                                                 >  SRR4302543.3969752/1‑94 (MQ=60)
                              CAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGG                                                                 <  SRR4302543.5353803/94‑1 (MQ=60)
                              CAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGG                                                                 >  SRR4302543.2922934/1‑94 (MQ=60)
                               CAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAGCGTCAGCAAACTACCGATCATCAATAACGGAAAATGGG                                                                <  SRR4302543.7877322/94‑1 (MQ=60)
                               AAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGG                                                                >  SRR4302543.3637873/1‑94 (MQ=60)
                               AAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGG                                                                <  SRR4302543.3680417/94‑1 (MQ=60)
                               AAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGG                                                                >  SRR4302543.1452900/1‑94 (MQ=60)
                               AAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGG                                                                >  SRR4302543.1023558/1‑94 (MQ=60)
                                AGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGT                                                               >  SRR4302543.4915760/1‑94 (MQ=60)
                                AGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGT                                                               >  SRR4302543.427214/1‑94 (MQ=60)
                                 GGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTT                                                              <  SRR4302543.175887/94‑1 (MQ=60)
                                 GGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTT                                                              >  SRR4302543.335540/1‑94 (MQ=60)
                                 GGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTT                                                              <  SRR4302543.6875260/94‑1 (MQ=60)
                                  GTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTA                                                             >  SRR4302543.5295852/1‑94 (MQ=60)
                                  GTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTA                                                             <  SRR4302543.4305710/94‑1 (MQ=60)
                                   TGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAA                                                            >  SRR4302543.1890070/1‑94 (MQ=60)
                                   TGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAA                                                            <  SRR4302543.7618287/94‑1 (MQ=60)
                                   GGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAA                                                            <  SRR4302543.3197745/94‑1 (MQ=60)
                                    GCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAA                                                           <  SRR4302543.1574417/94‑1 (MQ=60)
                                     CGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAAC                                                          <  SRR4302543.5241657/94‑1 (MQ=60)
                                     CGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAAC                                                          <  SRR4302543.2414845/94‑1 (MQ=60)
                                      GCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACC                                                         >  SRR4302543.5647165/1‑94 (MQ=60)
                                      GCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACC                                                         <  SRR4302543.5747255/94‑1 (MQ=60)
                                      GCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACC                                                         <  SRR4302543.3101006/94‑1 (MQ=60)
                                      GCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACC                                                         <  SRR4302543.283776/94‑1 (MQ=60)
                                       CCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCG                                                        <  SRR4302543.13586/94‑1 (MQ=60)
                                       CCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCG                                                        >  SRR4302543.124888/1‑94 (MQ=60)
                                       CCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCG                                                        >  SRR4302543.2175783/1‑94 (MQ=60)
                                        CAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGA                                                       <  SRR4302543.1497585/94‑1 (MQ=60)
                                        CAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGA                                                       >  SRR4302543.3708709/1‑94 (MQ=60)
                                        CAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGA                                                       <  SRR4302543.2550404/94‑1 (MQ=60)
                                         AGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTGCCGATCATCAATAACGGAAAATGGGTTAAACCGAC                                                      <  SRR4302543.940641/94‑1 (MQ=60)
                                         AGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGAC                                                      >  SRR4302543.3065541/1‑94 (MQ=60)
                                         AGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGAC                                                      >  SRR4302543.6026351/1‑94 (MQ=60)
                                         AGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGAC                                                      >  SRR4302543.4202236/1‑94 (MQ=60)
                                         AGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGAC                                                      <  SRR4302543.5254840/94‑1 (MQ=60)
                                          GTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACC                                                     >  SRR4302543.4634096/1‑94 (MQ=60)
                                           TCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCG                                                    >  SRR4302543.5812806/1‑94 (MQ=60)
                                            CACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGC                                                   >  SRR4302543.6538728/1‑94 (MQ=60)
                                             ACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCC                                                  >  SRR4302543.6710898/1‑94 (MQ=60)
                                              CGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCT                                                 >  SRR4302543.4836857/1‑94 (MQ=60)
                                              CGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCT                                                 >  SRR4302543.4836858/1‑94 (MQ=60)
                                              CGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCT                                                 >  SRR4302543.3441037/1‑94 (MQ=60)
                                               GCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTG                                                >  SRR4302543.4547956/1‑94 (MQ=60)
                                               GCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTG                                                >  SRR4302543.4526693/1‑94 (MQ=60)
                                               GCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTG                                                <  SRR4302543.762790/94‑1 (MQ=60)
                                               GCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTG                                                <  SRR4302543.4723381/94‑1 (MQ=60)
                                                CTGATGGCGATAGCGCGAGATCAGCGCTACGGGCCGTAACGTAAGCAAACTACCGATAATCAATAACGacaaatccaacaaaacgaccgcctgc                                               >  SRR4302543.4081064/1‑68 (MQ=60)
                                                CTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGCCCGCCTCC                                               >  SRR4302543.5335092/1‑94 (MQ=60)
                                                CTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGC                                               >  SRR4302543.4081301/1‑94 (MQ=60)
                                                CTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGC                                               >  SRR4302543.394054/1‑94 (MQ=60)
                                                  GATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGT                                             >  SRR4302543.3498360/1‑94 (MQ=60)
                                                  GATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGT                                             <  SRR4302543.161748/94‑1 (MQ=60)
                                                  GATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGT                                             >  SRR4302543.4337870/1‑94 (MQ=60)
                                                  GATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGT                                             >  SRR4302543.4034716/1‑94 (MQ=60)
                                                   ATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTT                                            >  SRR4302543.2647847/1‑94 (MQ=60)
                                                     GGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAG                                          <  SRR4302543.7946130/94‑1 (MQ=60)
                                                       CGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCC                                        >  SRR4302543.7682627/1‑94 (MQ=60)
                                                       CGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCC                                        >  SRR4302543.7248954/1‑94 (MQ=60)
                                                        GATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCA                                       >  SRR4302543.3755052/1‑94 (MQ=60)
                                                        GATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCA                                       >  SRR4302543.536104/1‑94 (MQ=60)
                                                        GATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCA                                       >  SRR4302543.705260/1‑94 (MQ=60)
                                                         ATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAG                                      >  SRR4302543.287402/1‑94 (MQ=60)
                                                           AGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAACCCGACCGCCTGCGTTAGCCAGTA                                    <  SRR4302543.3836588/94‑1 (MQ=60)
                                                           AGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTA                                    >  SRR4302543.4158306/1‑94 (MQ=60)
                                                              GCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAAT                                 >  SRR4302543.7546142/1‑94 (MQ=60)
                                                              GCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAAT                                 >  SRR4302543.7546141/1‑94 (MQ=60)
                                                               CGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATC                                <  SRR4302543.2862418/94‑1 (MQ=60)
                                                               CGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATC                                >  SRR4302543.1411826/1‑94 (MQ=60)
                                                               CGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATC                                <  SRR4302543.1342642/94‑1 (MQ=60)
                                                                GAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCA                               <  SRR4302543.5157466/94‑1 (MQ=60)
                                                                GAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCA                               <  SRR4302543.59649/94‑1 (MQ=60)
                                                                GAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCA                               >  SRR4302543.7532185/1‑94 (MQ=60)
                                                                GAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCA                               <  SRR4302543.4523276/94‑1 (MQ=60)
                                                                 AGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAG                              <  SRR4302543.737389/94‑1 (MQ=60)
                                                                 AGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAG                              <  SRR4302543.1065142/94‑1 (MQ=60)
                                                                 AGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAG                              <  SRR4302543.6913671/94‑1 (MQ=60)
                                                                 AGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAG                              <  SRR4302543.5275795/94‑1 (MQ=60)
                                                                  GATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGC                             <  SRR4302543.3655905/94‑1 (MQ=60)
                                                                  GATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGC                             <  SRR4302543.1331172/94‑1 (MQ=60)
                                                                   ATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCA                            >  SRR4302543.2457326/1‑94 (MQ=60)
                                                                    TCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAG                           <  SRR4302543.60947/94‑1 (MQ=60)
                                                                    TCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAG                           <  SRR4302543.4974861/94‑1 (MQ=60)
                                                                    TCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAG                           <  SRR4302543.27849/94‑1 (MQ=60)
                                                                     CAGCGTTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGC                          <  SRR4302543.6703899/94‑1 (MQ=60)
                                                                      AGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCC                         >  SRR4302543.5042765/1‑94 (MQ=60)
                                                                        CGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCAC                       >  SRR4302543.3089422/1‑94 (MQ=60)
                                                                        CGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCAC                       >  SRR4302543.5769920/1‑94 (MQ=60)
                                                                         GCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACT                      <  SRR4302543.6983611/94‑1 (MQ=60)
                                                                         GCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACT                      >  SRR4302543.2005674/1‑94 (MQ=60)
                                                                          CTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTC                     >  SRR4302543.6831891/1‑94 (MQ=60)
                                                                          CTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTC                     >  SRR4302543.1140338/1‑94 (MQ=60)
                                                                          CTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTC                     >  SRR4302543.5355096/1‑94 (MQ=60)
                                                                            ACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCG                   <  SRR4302543.1714965/94‑1 (MQ=60)
                                                                             CGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGC                  >  SRR4302543.4661731/1‑94 (MQ=60)
                                                                             CGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGC                  <  SRR4302543.3745762/94‑1 (MQ=60)
                                                                               GGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGC                >  SRR4302543.2144505/1‑94 (MQ=60)
                                                                                 CAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGCCC              >  SRR4302543.1056244/1‑94 (MQ=60)
                                                                                 CAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGCCC              <  SRR4302543.7764913/94‑1 (MQ=60)
                                                                                  AGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGCCCA             >  SRR4302543.305098/1‑94 (MQ=60)
                                                                                  AGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGCCCA             >  SRR4302543.1276659/1‑94 (MQ=60)
                                                                                   GTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGCCCAG            <  SRR4302543.6406591/94‑1 (MQ=60)
                                                                                   GTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGCCCAG            >  SRR4302543.3285596/1‑94 (MQ=60)
                                                                                    TAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGCCCAGC           >  SRR4302543.2527432/1‑94 (MQ=60)
                                                                                    TAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGCCCAGC           >  SRR4302543.3487236/1‑94 (MQ=60)
                                                                                     AACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGCCCAGCA          <  SRR4302543.1582802/94‑1 (MQ=60)
                                                                                      ACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGCTTAAACCGCCCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGCCCAGCAA         <  SRR4302543.2980406/94‑1 (MQ=60)
                                                                                       CGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGCCCAGCAAT        <  SRR4302543.2359379/94‑1 (MQ=60)
                                                                                       CGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGCCCAGCAAT        <  SRR4302543.685499/94‑1 (MQ=60)
                                                                                       CGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGCCCAGCAAT        >  SRR4302543.3415930/1‑94 (MQ=60)
                                                                                       CGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGCCCAGCAAT        <  SRR4302543.7315959/94‑1 (MQ=60)
                                                                                        GTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGCCCAGCAATA       >  SRR4302543.5437960/1‑94 (MQ=60)
                                                                                        GTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGCCCAGCAATA       >  SRR4302543.6150378/1‑94 (MQ=60)
                                                                                        GTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGCCCAGCAATA       >  SRR4302543.1113070/1‑94 (MQ=60)
                                                                                         TCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAACCAGCAGCCTCTCCGCGCCCAGCAATAC      <  SRR4302543.2249971/94‑1 (MQ=60)
                                                                                          CAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGCCCAGCAATACG     >  SRR4302543.6067978/1‑94 (MQ=60)
                                                                                          CAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGCCCAGCAATACG     <  SRR4302543.4257746/94‑1 (MQ=60)
                                                                                          CAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGCCCAGCAATACG     <  SRR4302543.4550231/94‑1 (MQ=60)
                                                                                           AGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGCCCAGCAATACGG    >  SRR4302543.320106/1‑94 (MQ=60)
                                                                                           AGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGCCCAGCAATACGG    >  SRR4302543.7995229/1‑94 (MQ=60)
                                                                                           AGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGCCCAGCAATACGG    <  SRR4302543.1981747/94‑1 (MQ=60)
                                                                                            GCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGCCCAGCAATACGGG   <  SRR4302543.528100/94‑1 (MQ=60)
                                                                                             CAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGCCCAGCAATACGGGC  >  SRR4302543.3444220/1‑94 (MQ=60)
                                                                                             CAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGCCCAGCAATACGGGC  >  SRR4302543.6000524/1‑94 (MQ=60)
                                                                                             |                                                                                             
CGCCGCCGTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGCCCAGCAATACGGGC  >  NC_000913/3847398‑3847584

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑