Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1696	279.3	15874187	97.8%	15524954	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,927,931	C→T	A264T (GCC→ACC)	yieN ←	putative 2‑component regulator

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,927,931	0	C	T	99.2%	1359.9 / NA	397	A264T (GCC→ACC)	yieN	putative 2‑component regulator
Reads supporting (aligned to +/- strand): ref base C (3/0); new base T (194/200); total (197/200)
Fisher's exact test for biased strand distribution p-value = 1.21e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 415 total aligned reads displayed.

TCAAATTCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGCGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTATCCAGTTGCTGGCGCAGCA  >  NC_000913/3927841‑3928020

tCAAATTCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGgtgc                                                                                          >  1:706584/1‑93 (MQ=255)

tCAAATTCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGgtgc                                                                                          <  1:7521522/93‑1 (MQ=255)

tCAAATTCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGgtgc                                                                                          >  2:3062499/1‑93 (MQ=255)

 cAAATTCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCt                                                                                         >  2:5241738/1‑93 (MQ=255)

  aaaTTCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTg                                                                                        <  1:6915696/93‑1 (MQ=255)

   aaTTCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTgg                                                                                       >  2:2577891/1‑93 (MQ=255)

    aTTCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGc                                                                                      >  2:3490970/1‑93 (MQ=255)

     ttCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGcc                                                                                     >  2:4121728/1‑93 (MQ=255)

      tCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCt                                                                                    <  1:2604231/93‑1 (MQ=255)

      tCAGGCGTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCt                                                                                    <  1:5173526/93‑1 (MQ=255)

        aGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGc                                                                                  >  1:5910258/1‑93 (MQ=255)

        aGGCTTTGCGCGTCATACCACAGGCAATCGTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGc                                                                                  <  1:911852/93‑1 (MQ=255)

          gCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCaa                                                                                <  1:5426287/93‑1 (MQ=255)

           cTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCaat                                                                               <  2:2048121/93‑1 (MQ=255)

           cTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCaat                                                                               <  2:3313856/93‑1 (MQ=255)

            tttGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCaata                                                                              <  2:4659537/93‑1 (MQ=255)

            tttGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCaata                                                                              <  2:4827656/93‑1 (MQ=255)

            tttGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCaata                                                                              >  2:7165076/1‑93 (MQ=255)

            tttGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCaata                                                                              <  1:5111823/93‑1 (MQ=255)

              tGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCaataat                                                                            >  1:1962105/1‑93 (MQ=255)

              tGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCaataat                                                                            <  1:2447036/93‑1 (MQ=255)

               gcgcGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATc                                                                           <  2:130690/93‑1 (MQ=255)

                cgcgTCATACCACAGGCAATCTGTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCg                                                                          <  1:834602/93‑1 (MQ=255)

                 gcgTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCCATAATCgg                                                                         >  2:7436446/1‑93 (MQ=255)

                 gcgTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCgg                                                                         >  1:7012611/1‑93 (MQ=255)

                 gcgTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCgg                                                                         >  1:5591239/1‑93 (MQ=255)

                 gcgTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCgg                                                                         >  1:2874692/1‑93 (MQ=255)

                  cgTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGa                                                                        <  2:3680647/93‑1 (MQ=255)

                   gTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGAt                                                                       >  2:183671/1‑93 (MQ=255)

                    tCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATc                                                                      <  2:7300982/93‑1 (MQ=255)

                        aCCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑tt                                                                 >  2:648677/1‑93 (MQ=255)

                         ccACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑ttt                                                                >  1:3223164/1‑93 (MQ=255)

                         ccACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGACCTGCAATAATCGGATCGC‑ttt                                                                <  1:6382484/93‑1 (MQ=255)

                         ccACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGCGCTGGCCTGCAATAATCGGATCGC‑ttt                                                                >  1:4122690/1‑93 (MQ=255)

                         ccACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGCGCTGGCCTGCAATAATCGGATCGC‑tct                                                                >  1:6676848/1‑91 (MQ=255)

                          cacaGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑tttt                                                               >  2:5502695/1‑93 (MQ=255)

                           acaGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑ttttt                                                              <  1:6593487/93‑1 (MQ=255)

                            caGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑tttttt                                                             >  1:2724458/1‑93 (MQ=255)

                             aGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTc                                                            >  2:2238270/1‑93 (MQ=255)

                             aGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTc                                                            <  2:6825767/93‑1 (MQ=255)

                               gCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCa                                                          <  1:6096384/93‑1 (MQ=255)

                               gCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCa                                                          <  1:7814110/93‑1 (MQ=255)

                                cAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAg                                                         <  1:1359986/93‑1 (MQ=255)

                                  aTCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGcg                                                       >  1:364987/1‑93 (MQ=255)

                                   tCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGcga                                                      <  1:452965/93‑1 (MQ=255)

                                   tCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGcga                                                      >  2:2706356/1‑93 (MQ=255)

                                    cTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGcgac                                                     <  2:6595774/93‑1 (MQ=255)

                                     tttCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGCGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGcgacg                                                    >  1:7682177/1‑93 (MQ=255)

                                      ttCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGcgacga                                                   <  1:6288847/93‑1 (MQ=255)

                                      ttCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGcgacga                                                   <  2:5887663/93‑1 (MQ=255)

                                      ttCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGcgacga                                                   <  1:5390149/93‑1 (MQ=255)

                                      tgtaGCAAAAAGAAATCTACCGGGGCAACAGCACGGCGACCGCCAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGcgacga                                                   <  1:5301901/90‑1 (MQ=255)

                                        cAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGCTTTTTTTCCAGCGACGAt                                                  <  2:7684435/93‑1 (MQ=255)

                                        cAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATc                                                 <  2:2959438/93‑1 (MQ=255)

                                         aGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATcc                                                <  2:4166194/93‑1 (MQ=255)

                                         aGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATcc                                                <  1:4399417/93‑1 (MQ=255)

                                             aaaTGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCgaga                                            >  2:1180500/1‑93 (MQ=255)

                                             aaaTGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCgaga                                            >  2:6289726/1‑93 (MQ=255)

                                             aaaTGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCgaga                                            >  1:4770286/1‑93 (MQ=255)

                                             aaaTGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCgaga                                            >  1:4887774/1‑93 (MQ=255)

                                              aaTGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGAc                                           >  1:1064289/1‑93 (MQ=255)

                                               aTGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACa                                          >  1:4825920/1‑93 (MQ=255)

                                                tGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACAt                                         <  2:807181/93‑1 (MQ=255)

                                                 gagaTCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCCGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATa                                        <  2:5340043/93‑1 (MQ=255)

                                                  agaTCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATaa                                       <  1:5358363/93‑1 (MQ=255)

                                                    aTCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAgg                                     >  2:2429838/1‑93 (MQ=255)

                                                    aTCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAgg                                     <  1:6816833/93‑1 (MQ=255)

                                                     tCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGGCATAAGgc                                    <  1:959640/93‑1 (MQ=255)

                                                     tCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGgc                                    >  2:7565510/1‑93 (MQ=255)

                                                     tCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGgc                                    >  1:2097249/1‑93 (MQ=255)

                                                     tCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGgc                                    <  1:616805/93‑1 (MQ=255)

                                                     tCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGgc                                    <  2:1637979/93‑1 (MQ=255)

                                                      cTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGgcg                                   <  2:5041918/93‑1 (MQ=255)

                                                       tACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGgcgc                                  >  1:4682004/1‑93 (MQ=255)

                                                       tACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGgcgc                                  >  2:4290318/1‑93 (MQ=255)

                                                        aCCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCa                                 <  1:2284312/93‑1 (MQ=255)

                                                        aCCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCa                                 >  1:386043/1‑93 (MQ=255)

                                                          cGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATc                               <  2:4050815/93‑1 (MQ=255)

                                                                aaCAGCACTGCGCCCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTaa                         <  2:5720715/93‑1 (MQ=255)

                                                                aaCAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTaa                         <  1:1596771/93‑1 (MQ=255)

                                                                 aCAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTCAt                        >  2:440684/1‑93 (MQ=255)

                                                                   aGCAGTGCGACAGCTAAAAAAGTTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAAttt                      <  2:230306/93‑1 (MQ=255)

                                                                     cACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTAt                    >  1:3245968/1‑93 (MQ=255)

                                                                       cTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTATcc                  >  1:7378502/1‑93 (MQ=255)

                                                                       cTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTATcc                  <  2:5625660/93‑1 (MQ=255)

                                                                        tGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCTC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTATCCa                 <  1:3064127/93‑1 (MQ=255)

                                                                        tGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTATCCa                 <  1:7222321/93‑1 (MQ=255)

                                                                        tGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTATCCa                 <  2:2886731/93‑1 (MQ=255)

                                                                          cGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTATCCAGt               <  2:1057725/93‑1 (MQ=255)

                                                                           gACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTATCCAGtt              <  2:3952900/93‑1 (MQ=255)

                                                                              cGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTATCCAGTTGCt           <  2:2166378/93‑1 (MQ=255)

                                                                              cGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTATCCAGTTGCt           >  1:4221229/1‑93 (MQ=255)

                                                                                cTAAAAAATGTTCTGGCCTGCAACAAACCCATCGC‑TTTTTGCCAAGGAAGATCCAAGACATAAGGCGCAACCGATAATTTAGGTAGTTGCTgg         <  2:1512154/93‑1 (MQ=255)

                                                                                 tAAAAAAGGTGCTGGCCTGCAATAATCGGATCGCTTTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTATCCAGTTGCTgg         >  1:6324441/1‑93 (MQ=255)

                                                                                 tAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTATCCAGTTGCTGgc        >  1:4031363/1‑93 (MQ=255)

                                                                                    aaaaGGTGCTGGCCTGCAATAATCGTATCTC‑TTTGTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTATCCAGTTGCTGGCgca     <  1:5532573/93‑1 (MQ=255)

                                                                                      aaGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTATCCAGTTGCTGGCgcagc   <  2:3132475/93‑1 (MQ=255)

                                                                                       aGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTATCCAGTTGCTGGCgcagca  <  1:2023080/93‑1 (MQ=255)

                                                                                       aGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTATCCAGTTGCTGGCgcagca  <  2:6068205/93‑1 (MQ=255)

                                                                                       aGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTATCCAGTTGCTGGCgcagca  <  2:3439130/93‑1 (MQ=255)

TCAAATTCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGCGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTATCCAGTTGCTGGCGCAGCA  >  NC_000913/3927841‑3928020

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 238 total aligned reads displayed.

GTATCAAATTCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGCGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTATCCAGTTGCTGGCGCAGCATAAA  >  NC_000913/3927838‑3928024

GTATCAAATTCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGT                                                                                                <  SRR4302543.3147047/94‑1 (MQ=60)

GTATCAAATTCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGT                                                                                                >  SRR4302543.4209207/1‑94 (MQ=60)

GTATCAAATTCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGT                                                                                                >  SRR4302543.5280171/1‑94 (MQ=60)

 TATCAAATTCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTG                                                                                               >  SRR4302543.17387/1‑94 (MQ=60)

  ATCAAATTCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGC                                                                                              <  SRR4302543.4422044/94‑1 (MQ=60)

  ATCAAATTCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAAATCTACCGGAGCAACACCACTGCGACCCCTAAAAAAGGTGC                                                                                              >  SRR4302543.4150959/1‑94 (MQ=60)

   TCAAATTCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCT                                                                                             <  SRR4302543.5591573/94‑1 (MQ=60)

   TCAAATTCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCT                                                                                             <  SRR4302543.919554/94‑1 (MQ=60)

   TCAAATTCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCT                                                                                             <  SRR4302543.7593306/94‑1 (MQ=60)

    CAAATTCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTG                                                                                            <  SRR4302543.1980569/94‑1 (MQ=60)

     AAATTCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGG                                                                                           <  SRR4302543.6980703/94‑1 (MQ=60)

     AAATTCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGG                                                                                           >  SRR4302543.396971/1‑94 (MQ=60)

     AAATTCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGG                                                                                           <  SRR4302543.1243838/94‑1 (MQ=60)

     AAATTCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGG                                                                                           <  SRR4302543.4903248/94‑1 (MQ=60)

     AAATTCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGG                                                                                           >  SRR4302543.5247597/1‑94 (MQ=60)

     AAATTCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGCGCTGG                                                                                           >  SRR4302543.747442/1‑94 (MQ=60)

      AATTCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGC                                                                                          <  SRR4302543.4594697/94‑1 (MQ=60)

      AATTCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGC                                                                                          >  SRR4302543.6380749/1‑94 (MQ=60)

      AATTCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGC                                                                                          >  SRR4302543.543541/1‑94 (MQ=60)

        TTCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCT                                                                                        >  SRR4302543.7124471/1‑94 (MQ=60)

        TTCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCT                                                                                        <  SRR4302543.6678530/94‑1 (MQ=60)

        TTCAGGCGTTGCGCGTCATACCACAGGCAAGCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCT                                                                                        <  SRR4302543.938902/94‑1 (MQ=60)

         TCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTG                                                                                       <  SRR4302543.2627879/94‑1 (MQ=60)

         TCAGGCGTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTG                                                                                       <  SRR4302543.5220244/94‑1 (MQ=60)

          CAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGC                                                                                      >  SRR4302543.5964223/1‑94 (MQ=60)

          CAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGC                                                                                      >  SRR4302543.7591851/1‑94 (MQ=60)

          CAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGC                                                                                      >  SRR4302543.4589932/1‑94 (MQ=60)

          CAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGA                                                                                      >  SRR4302543.2725727/1‑94 (MQ=60)

           AGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCA                                                                                     >  SRR4302543.5465066/1‑94 (MQ=60)

           AGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCA                                                                                     >  SRR4302543.6395027/1‑94 (MQ=60)

             GCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAAT                                                                                   <  SRR4302543.5475603/94‑1 (MQ=60)

              CTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATA                                                                                  <  SRR4302543.7942707/94‑1 (MQ=60)

               TTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAA                                                                                 <  SRR4302543.5158074/94‑1 (MQ=60)

               TTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAA                                                                                 <  SRR4302543.4244699/94‑1 (MQ=60)

                TTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAAT                                                                                >  SRR4302543.1979705/1‑94 (MQ=60)

                TTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAAT                                                                                <  SRR4302543.6908642/94‑1 (MQ=60)

                TTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAAT                                                                                >  SRR4302543.6165059/1‑94 (MQ=60)

                TTGCGAGTCATTCCACAGGCAATCTTGTAACAAAATTAACTCTACCGGGGCACCAGCACTGCGCCCGCTAAAAAAGGCGCTGGCCTGCAATAAT                                                                                <  SRR4302543.6771719/94‑1 (MQ=42)

                 TGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATC                                                                               <  SRR4302543.2469099/94‑1 (MQ=60)

                  NCNCGTCNTNCCACAGGCAANNNNTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCG                                                                              <  SRR4302543.2125871/94‑1 (MQ=60)

                  GCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCG                                                                              >  SRR4302543.983128/1‑94 (MQ=60)

                   CGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGG                                                                             >  SRR4302543.2900862/1‑94 (MQ=60)

                   CGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGG                                                                             >  SRR4302543.7079512/1‑94 (MQ=60)

                   CGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGG                                                                             >  SRR4302543.5642171/1‑94 (MQ=60)

                   CGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGG                                                                             <  SRR4302543.1553009/94‑1 (MQ=60)

                   CGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGG                                                                             <  SRR4302543.864658/94‑1 (MQ=60)

                   CGCGTCATACCACAGGCAATCTGTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGG                                                                             <  SRR4302543.841969/94‑1 (MQ=60)

                     CGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGAT                                                                           >  SRR4302543.4348378/1‑94 (MQ=60)

                      GTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATC                                                                          <  SRR4302543.4449716/94‑1 (MQ=60)

                      GTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATC                                                                          >  SRR4302543.5521501/1‑94 (MQ=60)

                      GTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATC                                                                          <  SRR4302543.2747248/94‑1 (MQ=60)

                        CATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC                                                                        >  SRR4302543.2417978/1‑94 (MQ=60)

                        CATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC                                                                        <  SRR4302543.5300933/94‑1 (MQ=60)

                         ATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑T                                                                      >  SRR4302543.703871/1‑94 (MQ=60)

                           ACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTT                                                                    >  SRR4302543.3252295/1‑94 (MQ=60)

                           ACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGCGCTGGCCTGCAATAATCGGATCGC‑TTT                                                                    >  SRR4302543.4159850/1‑94 (MQ=60)

                           ACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGCGCTGGCCTGCAATAATCGGATCGC‑TCT                                                                    >  SRR4302543.6739882/1‑94 (MQ=60)

                            CCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTT                                                                   <  SRR4302543.1655434/94‑1 (MQ=60)

                            CCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTT                                                                   <  SRR4302543.1346873/94‑1 (MQ=60)

                            CCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGACCTGCAATAATCGGATCGC‑TTTT                                                                   <  SRR4302543.6442552/94‑1 (MQ=60)

                             CACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGCGCTGGCCTGCAATAATCGGATCGC‑TTTTT                                                                  >  SRR4302543.6221123/1‑94 (MQ=60)

                              ACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTT                                                                 >  SRR4302543.2749240/1‑94 (MQ=60)

                              ACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTT                                                                 <  SRR4302543.6655610/94‑1 (MQ=60)

                               CAGGCAATCTTTCAGCAAAATGAGATCTACCGGGTCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTC                                                                <  SRR4302543.379169/94‑1 (MQ=60)

                                  GCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAG                                                             >  SRR4302543.7084566/1‑94 (MQ=60)

                                  GCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAG                                                             <  SRR4302543.7887749/94‑1 (MQ=60)

                                  GCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAG                                                             <  SRR4302543.6154151/94‑1 (MQ=60)

                                  GCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAG                                                             <  SRR4302543.2824047/94‑1 (MQ=60)

                                   CNNTNNNTNNGCAAAANNANNNNTNNCGGGNCAACAGCACNGNGACCGCTNAAANAGGNGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGC                                                            <  SRR4302543.164303/94‑1 (MQ=60)

                                   CAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGC                                                            >  SRR4302543.3994405/1‑94 (MQ=60)

                                   CAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGC                                                            >  SRR4302543.6424347/1‑94 (MQ=60)

                                   CAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGC                                                            <  SRR4302543.1372162/94‑1 (MQ=60)

                                    AATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCG                                                           <  SRR4302543.4115392/94‑1 (MQ=60)

                                    AATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCG                                                           >  SRR4302543.368366/1‑94 (MQ=60)

                                    AATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCG                                                           >  SRR4302543.368365/1‑94 (MQ=60)

                                    AATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCG                                                           <  SRR4302543.4818569/94‑1 (MQ=60)

                                    AATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCG                                                           <  SRR4302543.7153285/94‑1 (MQ=60)

                                    AATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCG                                                           <  SRR4302543.6037644/94‑1 (MQ=60)

                                    AATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCG                                                           >  SRR4302543.7474007/1‑94 (MQ=60)

                                     ATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGC                                                          >  SRR4302543.5198251/1‑94 (MQ=60)

                                     ATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGA                                                          >  SRR4302543.3134393/1‑94 (MQ=60)

                                     ATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGA                                                          >  SRR4302543.7130054/1‑94 (MQ=60)

                                     ATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGA                                                          >  SRR4302543.228592/1‑94 (MQ=60)

                                      TCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGAC                                                         <  SRR4302543.457184/94‑1 (MQ=60)

                                      TCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGAC                                                         <  SRR4302543.3339219/94‑1 (MQ=60)

                                       CTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACG                                                        >  SRR4302543.2084510/1‑94 (MQ=60)

                                       CTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGCGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACG                                                        >  SRR4302543.7754951/1‑94 (MQ=60)

                                         TTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGAT                                                      <  SRR4302543.6348074/94‑1 (MQ=60)

                                         TTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGAT                                                      <  SRR4302543.5439140/94‑1 (MQ=60)

                                         TTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGAT                                                      <  SRR4302543.5439139/94‑1 (MQ=60)

                                         TTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGAT                                                      >  SRR4302543.550483/1‑94 (MQ=60)

                                         TTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGAT                                                      <  SRR4302543.5349768/94‑1 (MQ=60)

                                         TTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGAT                                                      <  SRR4302543.5838547/94‑1 (MQ=60)

                                          TCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGACTGCAATAATCGGATCGG‑TTTTTTCCAGCGACGATC                                                     >  SRR4302543.2309057/1‑94 (MQ=60)

                                           CAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCC                                                    <  SRR4302543.4630696/94‑1 (MQ=60)

                                            AGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCG                                                   <  SRR4302543.4439295/94‑1 (MQ=60)

                                            AGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCG                                                   <  SRR4302543.6024556/94‑1 (MQ=60)

                                            AGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACAATCCG                                                   >  SRR4302543.6629541/1‑94 (MQ=60)

                                              CAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAG                                                 >  SRR4302543.3577471/1‑94 (MQ=60)

                                              CAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAG                                                 >  SRR4302543.3807755/1‑94 (MQ=60)

                                              CAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAG                                                 <  SRR4302543.5828900/94‑1 (MQ=60)

                                              CAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAG                                                 <  SRR4302543.932623/94‑1 (MQ=60)

                                              CAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAG                                                 <  SRR4302543.205413/94‑1 (MQ=60)

                                              CAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAG                                                 >  SRR4302543.5347108/1‑94 (MQ=60)

                                              CAAAATGAGATCTACCGGGGCAACAGCACGGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAG                                                 <  SRR4302543.3099310/94‑1 (MQ=60)

                                               AAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTTCAGCGACGATCCGAGA                                                >  SRR4302543.324511/1‑94 (MQ=60)

                                               AAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGA                                                >  SRR4302543.4813887/1‑94 (MQ=60)

                                               AAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGA                                                >  SRR4302543.4932323/1‑94 (MQ=60)

                                                AAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGAC                                               >  SRR4302543.2501451/1‑94 (MQ=60)

                                                AAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGAC                                               >  SRR4302543.1073849/1‑94 (MQ=60)

                                                 AATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACA                                              >  SRR4302543.7816378/1‑94 (MQ=60)

                                                  ATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACAT                                             >  SRR4302543.898718/1‑94 (MQ=60)

                                                    GAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAA                                           <  SRR4302543.4275850/94‑1 (MQ=60)

                                                     AGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAG                                          <  SRR4302543.6397674/94‑1 (MQ=60)

                                                     AGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAG                                          <  SRR4302543.7234675/94‑1 (MQ=60)

                                                     AGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAG                                          <  SRR4302543.5406859/94‑1 (MQ=60)

                                                     AGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAG                                          <  SRR4302543.4110189/94‑1 (MQ=60)

                                                      GATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGG                                         >  SRR4302543.6381358/1‑94 (MQ=60)

                                                      GATATACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGACACATAAGG                                         >  SRR4302543.6284992/1‑94 (MQ=60)

                                                       ATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGC                                        <  SRR4302543.7449370/94‑1 (MQ=60)

                                                       ATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGC                                        >  SRR4302543.2115998/1‑94 (MQ=60)

                                                       ATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGC                                        <  SRR4302543.229932/94‑1 (MQ=60)

                                                       ATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGC                                        <  SRR4302543.6881188/94‑1 (MQ=60)

                                                        TCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGGCATAAGGCG                                       <  SRR4302543.968049/94‑1 (MQ=60)

                                                        TCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCG                                       <  SRR4302543.622443/94‑1 (MQ=60)

                                                        TCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCG                                       >  SRR4302543.5075413/1‑94 (MQ=60)

                                                        TCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAAGCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCG                                       <  SRR4302543.7930088/94‑1 (MQ=60)

                                                         CTACCGGGGCAACAGCACTGCGACGGCTAAAGAAGGTGCTGGCCTGCAAGAATCGGATGGG‑TTTTTTGCAGCGGCGATCCGAGACATAAGGCGT                                      <  SRR4302543.5403547/94‑1 (MQ=60)

                                                         CTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGC                                      <  SRR4302543.5403546/94‑1 (MQ=60)

                                                         CTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGC                                      >  SRR4302543.4724698/1‑94 (MQ=60)

                                                         CTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGC                                      >  SRR4302543.4062601/1‑94 (MQ=60)

                                                          TACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCA                                     >  SRR4302543.6720094/1‑94 (MQ=60)

                                                          TACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCA                                     >  SRR4302543.389610/1‑94 (MQ=60)

                                                           ACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCAT                                    >  SRR4302543.3068590/1‑94 (MQ=60)

                                                           ACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCAT                                    <  SRR4302543.4800324/94‑1 (MQ=60)

                                                           ACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCAT                                    <  SRR4302543.2305183/94‑1 (MQ=60)

                                                           ACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCAT                                    >  SRR4302543.263893/1‑94 (MQ=60)

                                                             CGGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCC                                  <  SRR4302543.6766374/94‑1 (MQ=60)

                                                              GGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCG                                 <  SRR4302543.482308/94‑1 (MQ=60)

                                                              GGGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCG                                 <  SRR4302543.4779067/94‑1 (MQ=60)

                                                               GGGCAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGA                                >  SRR4302543.2490320/1‑94 (MQ=60)

                                                                  CAACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAA                             <  SRR4302543.4441559/94‑1 (MQ=60)

                                                                   AACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAAT                            <  SRR4302543.1611018/94‑1 (MQ=60)

                                                                   AACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAAT                            <  SRR4302543.4900854/94‑1 (MQ=60)

                                                                   AACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAAT                            >  SRR4302543.1149541/1‑94 (MQ=60)

                                                                   AACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAAT                            >  SRR4302543.3257738/1‑94 (MQ=60)

                                                                   AACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAAT                            >  SRR4302543.2981119/1‑94 (MQ=60)

                                                                    ACAGCTCTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGCCATAAGGCGCATCCGGTAATT                           <  SRR4302543.2351680/94‑1 (MQ=60)

                                                                    ACAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATT                           >  SRR4302543.5181260/1‑94 (MQ=60)

                                                                     CAGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTT                          >  SRR4302543.4168670/1‑94 (MQ=60)

                                                                      AGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTA                         <  SRR4302543.4873250/94‑1 (MQ=60)

                                                                      AGCACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTA                         <  SRR4302543.1847539/94‑1 (MQ=60)

                                                                        CACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTATC                       <  SRR4302543.3195161/94‑1 (MQ=60)

                                                                         CCTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTATCC                      <  SRR4302543.32694/94‑1 (MQ=60)

                                                                         ACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTATCC                      >  SRR4302543.2799939/1‑94 (MQ=60)

                                                                         ACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTATCC                      >  SRR4302543.4932925/1‑94 (MQ=60)

                                                                         ACTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTATCC                      >  SRR4302543.7449427/1‑94 (MQ=60)

                                                                          CTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTATCCA                     <  SRR4302543.6244686/94‑1 (MQ=60)

                                                                          CTGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTATCCA                     >  SRR4302543.6957691/1‑94 (MQ=60)

                                                                           TGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCTC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTATCCAG                    <  SRR4302543.3091687/94‑1 (MQ=60)

                                                                           TGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTATCCAG                    <  SRR4302543.7292312/94‑1 (MQ=60)

                                                                           TGCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTATCCAG                    >  SRR4302543.5430434/1‑94 (MQ=60)

                                                                            GCGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTATCCAGT                   <  SRR4302543.7866924/94‑1 (MQ=60)

                                                                             GGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTATCCAGTT                  <  SRR4302543.933585/94‑1 (MQ=60)

                                                                             CGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTATCCAGTT                  >  SRR4302543.6646627/1‑94 (MQ=60)

                                                                             CGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTATCCAGTT                  <  SRR4302543.7360198/94‑1 (MQ=60)

                                                                             CGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTATCCAGTT                  <  SRR4302543.2435034/94‑1 (MQ=60)

                                                                             CGACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTATCCAGTT                  <  SRR4302543.5355583/94‑1 (MQ=60)

                                                                              GACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTATCCAGTTG                 >  SRR4302543.7612617/1‑94 (MQ=60)

                                                                              GACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTATCCAGTTG                 >  SRR4302543.7612497/1‑94 (MQ=60)

                                                                              GACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTATCCAGTTG                 <  SRR4302543.6916371/94‑1 (MQ=60)

                                                                              GACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTATCCAGTTG                 >  SRR4302543.3368068/1‑94 (MQ=60)

                                                                               ACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTATCCAGTTGC                <  SRR4302543.1398522/94‑1 (MQ=60)

                                                                               ACCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTATCCAGTTGC                <  SRR4302543.6198445/94‑1 (MQ=60)

                                                                                CCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTATCCAGTTGCT               >  SRR4302543.5795345/1‑94 (MQ=60)

                                                                                CCGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTATCCAGTTGCT               >  SRR4302543.4259498/1‑94 (MQ=60)

                                                                                 CGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTATCCAGTTGCTG              <  SRR4302543.4868178/94‑1 (MQ=60)

                                                                                 CGCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTATCCAGTTGCTG              >  SRR4302543.5612952/1‑94 (MQ=60)

                                                                                  GCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTATCCAGTTGCTGG             <  SRR4302543.6665725/94‑1 (MQ=60)

                                                                                  GCTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTATCCAGTTGCTGG             >  SRR4302543.208975/1‑94 (MQ=60)

                                                                                   CTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGCTTTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTATCCAGTTGCTGG             >  SRR4302543.6383921/1‑94 (MQ=60)

                                                                                   CTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTATCCAGTTGCTGGC            <  SRR4302543.698780/94‑1 (MQ=60)

                                                                                   CTAAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTATCCAGTTGCTGGC            >  SRR4302543.1996710/1‑94 (MQ=60)

                                                                                     AAAAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTATCCAGTTGCTGGCGC          >  SRR4302543.6880887/1‑94 (MQ=60)

                                                                                       AAAAGGTGCTGGCCTGCAATAATCGTATCTC‑TTTGTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTATCCAGTTGCTGGCGCAG        <  SRR4302543.5582846/94‑1 (MQ=60)

                                                                                       AAAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTATCCAGTTGCTGGCGCAG        <  SRR4302543.6118144/94‑1 (MQ=60)

                                                                                        AAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTATCCAGTTGCTGGCGCAGC       <  SRR4302543.3264198/94‑1 (MQ=60)

                                                                                        AAAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTATCCAGTTGCTGGCGCAGC       >  SRR4302543.5293024/1‑94 (MQ=60)

                                                                                         AAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTATCCAGTTGCTGGCGCAGCA      <  SRR4302543.7609676/94‑1 (MQ=60)

                                                                                         AAGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTATCCAGTTGCTGGCGCAGCA      >  SRR4302543.713572/1‑94 (MQ=60)

                                                                                          AGGTGCTGGCCTGCTATAATCGGATCGC‑TTTTTTCCAGCGACCATCCGAGACATAAGGCGCATCCGGTAATTTATCCAGTTGCTGGCGCAGCAT     <  SRR4302543.5542507/94‑1 (MQ=60)

                                                                                          AGGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTATCCAGTTGCTGGCGCAGCAT     <  SRR4302543.2041263/94‑1 (MQ=60)

                                                                                           GGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTATCCAGTTGCTGGCGCAGCATA    <  SRR4302543.1576816/94‑1 (MQ=60)

                                                                                           GGTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTATCCAGTTGCTGGCGCAGCATA    <  SRR4302543.5103192/94‑1 (MQ=60)

                                                                                            GTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTATCCAGTTGCTGGCGCAGCATAA   >  SRR4302543.4301288/1‑94 (MQ=60)

                                                                                            GTGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTATCCAGTTGCTGGCGCAGCATAA   >  SRR4302543.895562/1‑94 (MQ=60)

                                                                                            GTGCTGCCCTGAAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTATCCAGTTGCTGGCGCAGCATAA   <  SRR4302543.5989260/94‑1 (MQ=60)

                                                                                             TGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTATCCAGTTGCTGGCGCAGCATAAA  <  SRR4302543.6286905/94‑1 (MQ=60)

                                                                                             TGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTATCCAGTTGCTGGCGCAGCATAAA  >  SRR4302543.3003678/1‑94 (MQ=60)

                                                                                             GGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTATCCAGTTGCTGGCGCAGCATAAA  <  SRR4302543.810232/94‑1 (MQ=60)

GTATCAAATTCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGCGCTGGCCTGCAATAATCGGATCGC‑TTTTTTCCAGCGACGATCCGAGACATAAGGCGCATCCGGTAATTTATCCAGTTGCTGGCGCAGCATAAA  >  NC_000913/3927838‑3928024

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`