Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1696 |
279.3 |
15874187 |
97.8% |
15524954 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,203,198 |
Δ1 bp |
coding (312/1290 nt) |
purD ← |
phosphoribosylglycinamide synthetase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,203,195 | 0 | T | . | 99.4%
| 746.8
/ ‑3.3
| 167 | coding (315/1290 nt) | purD | phosphoribosylglycinamide synthetase |
| Reads supporting (aligned to +/- strand): ref base T (1/0); new base . (56/110); total (57/110) |
| Fisher's exact test for biased strand distribution p-value = 3.41e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 262 total aligned reads displayed.
CGCAGATACGCCAGCGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGG‑CCAGGAAATCTTTGGTAAACGCTTTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCACCA > NC_000913/4203103‑4203283
|
cGCAGATACGCCAGCGCAGGTTCTCCCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGG‑CCAGGAAATCTTTGGTAAACGCt < 2:7077549/93‑1 (MQ=255)
cGCAGATACGCCAGCGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGG‑CCCGGGAATCTTTTGTAAAAGCt > 1:1969909/1‑93 (MQ=255)
gCAGATACGCCAGCGCAGGTTCTTCCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGG‑CCAGGAAATCTTTGGTAAACGCtt < 2:4273358/93‑1 (MQ=255)
gATACGCCAGCGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGG‑GCCGGGAATCTTTTGTAAACGCtttga > 1:32618/1‑91 (MQ=255)
gATACGCCAGCGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGG‑GCAGGGAATCTTTTGTAAACGCtttga > 1:4043769/1‑91 (MQ=255)
aTACGCCAGCGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGG‑CCAGGAAATCTTTGGTAAACGCtttgag < 2:5578129/93‑4 (MQ=255)
ctccAGCGCAGGTTCTACCTCGTTGAAGTTCGTGTATTCCGCAGTAGGGATCTTATGGCGGG‑CCAGGAAATCTTTGGTAAACGC‑TTTGAGCCt < 1:1622529/91‑1 (MQ=255)
cGCCAGCGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGG‑CCAGGAAAACTTTTGTAAAAGCTTTT‑AGCCt > 2:1772404/1‑93 (MQ=255)
ccAGCGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGG‑TCCGGGAAACTTTGGTAAACGC‑TTTGGGCCTTc > 1:7187886/1‑93 (MQ=255)
ccAGCGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGG‑GCAGGGAATATTTTGGTAACGC‑TTTGAGCCCTc > 2:2364862/1‑93 (MQ=255)
gcAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGG‑CCAGGAAATCTTTTGTAAACGCTTTT‑AGCCTTCCAGtt > 2:6453608/1‑93 (MQ=255)
gcAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGG‑CCAGGAAATCTTTTGTAAACGC‑TTTGAGCCTTCCAGtt > 1:6611182/1‑93 (MQ=255)
cAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGG‑GCCGGAAATCTTTGGTAAACGCTTTT‑AGCCTTCCCGTTg > 1:4133599/1‑93 (MQ=255)
ggTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGG‑CCAGGAAATCTTTTGTAAACGC‑TTTGAGCCTTCCCGTTggg > 1:6325081/1‑93 (MQ=255)
gTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCCGGGAAATATTTGG‑AAACG‑GTTTAAGCCTTCCAGTTgcgg > 2:4137190/1‑90 (MQ=255)
gTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGG‑GCAGGGAATCTTTGGTAAAAGC‑TTTGAGACTTCCAGTTgggg > 1:5188126/1‑92 (MQ=255)
gTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGG‑CCCGGCAATCTTTGGGAAACGC‑TTTGAGGCTTCCAGTTGGGc > 1:2743267/1‑93 (MQ=255)
gTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGG‑CCAGGAAATCTTTTGTAAACGC‑CTTGAGGCCTCCCGTTGGGc > 1:7562220/1‑93 (MQ=255)
ttCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGG‑CCAGGAAATCTTTTGTAAACGC‑TTTGAGCCTTCCAGTTtgggc > 2:3611521/1‑91 (MQ=255)
cTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGG‑CCAGGGAATCTTTGGTAAACGC‑TTTGAGCCTTCCCGTTGGGCCGc > 1:3632738/1‑93 (MQ=255)
tACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGG‑CCAGGAAAACTTTGGGAAACGC‑TTTGAGCCTTCCCGTTGGGCCGcc > 1:2770640/1‑92 (MQ=255)
aCCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGG‑CCAGGGAATCTTTGGTAAACGC‑TTTGAGCCCTCCAGTTGGGGCGCAc > 1:306519/1‑93 (MQ=255)
aCCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGG‑CCAGGAAATCTTTTGTAAAAGCTTTT‑TGCCTTCCCCTTGGGCAGCAc > 2:3503560/1‑93 (MQ=255)
ccTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGG‑CCCGGAAATCTTTGGTAAACGCTTTT‑AGCCCTCCAGTTGGGCCGcccc > 2:5707368/1‑93 (MQ=255)
ccTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGG‑CCAGGGAAACTTTTGTGAAAGCTTTT‑AGCCCTCCCGTTGGGGCGCAcc > 2:6965072/1‑93 (MQ=255)
cTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGG‑CCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCt < 1:4793839/93‑1 (MQ=255)
cTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGG‑CCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCt < 1:829353/93‑1 (MQ=255)
tCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGG‑GCAGGAAAACTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGGCGCACCTg > 1:2145752/1‑93 (MQ=255)
tCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGG‑CCAGGAAATCTTTTGTAAACGC‑TTTGAGCCTTCCCGTTGGGCCGCACCTg > 1:6657666/1‑93 (MQ=255)
cGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGG‑CCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGc < 1:1190895/93‑1 (MQ=255)
ggTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGG‑CCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCg > 1:7730856/1‑93 (MQ=255)
gTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGG‑CCAGGGAAACTTTTGTAAACGCTTTT‑AGCCCTTCAGTTGGGCCGCACCCGCgg > 2:7687522/1‑93 (MQ=255)
caGTTCTCGTATTCCGCCCTAGCGATCTTACGGCGGG‑CCAGAAAATCTTTGGTAAACGC‑TTGCATCCTTCCAGTGGGGCCGCACCGGCGGTTg < 2:7467007/92‑1 (MQ=255)
aGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGG‑CCCGGGAATCTTTTGTAAACGC‑TTTGAGCCTTCCACTTGGGGCGCACCTGCGGTTgg > 2:3370994/1‑93 (MQ=255)
gTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGG‑CCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCCGTTGGGGCGCACCTGCGGGTggg > 1:5415404/1‑93 (MQ=255)
ttCTGGTATTCCGCCGTAGGGATCTTATGGCGGG‑CCCGGAAATCTTTTGGAAACGC‑TTTGAGCCTTCCAGTTGGGGCGCACCCGCGGGTGGGc > 2:1596197/1‑93 (MQ=255)
ggTATTCCGCCGTAGGGATCTTATGGCGGG‑CCCGGAAATCTTTTGTGAACGC‑TTTGAGCCTTCCCGTTGGGGCGCACCTGCGGGTGGGGCgga > 2:1554744/1‑91 (MQ=255)
gTATTCCGCCGTAGGGATCTTATGGCGGG‑CCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAg < 1:1344966/93‑1 (MQ=255)
ttCCGCCGTAGGGATCTTATGGCGGG‑CCAGGGAATCCTTTGTAAACGC‑CTTGAGGCCTCCAGTTTGGGCGCACCCGCGGGTGGGCCGAAGaat > 2:176378/1‑91 (MQ=255)
ttCCGCCGTAGGGATCTTATGGCGGG‑CCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGaat > 1:1039111/1‑91 (MQ=255)
ttCCGCCGTAGGGATCTTATGGCGGG‑CCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGAtt < 2:603896/93‑1 (MQ=255)
tCCGCCGTAGGGATCTTATGGCGGG‑CCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGAttt < 2:2113794/93‑1 (MQ=255)
ccgccgTAGGGATCTTATGGCGGG‑CCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGGCGAAGAtttt > 1:5816771/1‑93 (MQ=255)
ccgccgTAGGGATCTTATGGCGGG‑CCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGAtttt < 1:889265/93‑1 (MQ=255)
gccgTAGGGATCTTATGGCGGG‑CCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCa < 2:364691/93‑1 (MQ=255)
gccgTAGGGATCTTATGGCGGG‑CCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCa < 1:6459201/93‑1 (MQ=255)
gccgTAGGGATCTTATGGCGGG‑CCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCa < 1:6263313/93‑1 (MQ=255)
cgTAGGGATCTTATGGCGGG‑CCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGc < 1:7829072/93‑1 (MQ=255)
tAGGGATCTTATGGCGGG‑CCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGccc < 2:6790244/93‑1 (MQ=255)
aGGGATCTTATGGCGGG‑CCAGGAAATCTTTTGTAAACGC‑TTTGAGCCTTCCAGGTGGGCCGCACCTGCGGTTGGGGCGAAGATTTTCAGCCcg > 1:1986583/1‑93 (MQ=255)
aGGGATCTTATGGCGGG‑CCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCcg < 1:3752726/93‑1 (MQ=255)
gggATCTTATGGCGGG‑CCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGGCGCACCTGCGGTTGGGGCGAAGATTTTCTGGCcgg > 1:3893333/1‑93 (MQ=255)
ggATCTTATGGCGGG‑CCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCCGTTGGGCCGCACCTGCGGTTGGGGCGAAGATTTTCAGCCccgc > 1:4597672/1‑93 (MQ=255)
gATCTTATGGCGGG‑CCAGGAAATCTTTTGGAAACGC‑TTTGAGCCCTCCAGTTGGGCCGCCCCTGCGGTTGGGCCGGAGATTTTCAGCCcggcg > 2:5755511/1‑93 (MQ=255)
tCTTATGGCGTG‑CCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCggcggc < 2:755443/93‑1 (MQ=255)
tCTTATGGCGGG‑CCAGGAAATCTTTGGGAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGGTGGGCCGAAGATTTTCAGCCccgcggg > 2:1321017/1‑92 (MQ=255)
cTTATGGCGGG‑CCAGGAAAACTTTGGTAAAAGC‑TTTGAGGCTTCCAGTTGGGCCGCACCTGCGGCTGGGGCGGAGGTTTTTATCTCGgcggcg > 2:7119642/1‑93 (MQ=255)
tATGGCGGG‑CCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGcgcg < 1:2313972/93‑1 (MQ=255)
gCGGG‑CCAGGAAATCTTTTGTAAACGC‑TTTGAGCCTTACAGGTGGGCCGCACCTGCGGTTGGGCCGCAGATTTTCAGAGCGGCGGCGACGAAg > 2:4612249/1‑93 (MQ=255)
cGGG‑CCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAgg < 2:670959/93‑1 (MQ=255)
cGGG‑CCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAgg < 1:235207/93‑1 (MQ=255)
ggg‑CCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGt > 1:4889433/1‑93 (MQ=255)
gg‑CCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTa < 2:2971446/93‑1 (MQ=255)
gg‑CCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTa < 1:5762648/93‑1 (MQ=255)
gg‑CCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTa < 1:4266334/93‑1 (MQ=255)
g‑CCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTAt < 2:5142370/93‑1 (MQ=255)
ccAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATc > 2:52962/1‑93 (MQ=255)
cAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCg > 2:6242125/1‑93 (MQ=255)
cAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCg > 1:180341/1‑93 (MQ=255)
aGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGa > 2:7790142/1‑93 (MQ=255)
aGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGa > 2:3877600/1‑93 (MQ=255)
ggAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGAc < 2:1040805/93‑1 (MQ=255)
ggAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGAc > 2:5386258/1‑93 (MQ=255)
gAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGAcc > 1:804052/1‑93 (MQ=255)
gAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGAcc > 2:474564/1‑93 (MQ=255)
aTCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACg > 2:1253185/1‑93 (MQ=255)
aTCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACg > 2:3195117/1‑93 (MQ=255)
aTCTTTCGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACg < 2:2300386/93‑1 (MQ=255)
tCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCGCCTGCGGTTGGGCCGAAGATTGTCAGCCCGGCGGCGCGGAAGGTATCGACCACGc < 2:5503574/93‑1 (MQ=255)
tCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGc < 2:4090508/93‑1 (MQ=255)
tCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGc > 1:4089036/1‑93 (MQ=255)
tCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGc < 1:7332947/93‑1 (MQ=255)
tCTTTGGTAAACGC‑TTTGAGCCTACCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGc < 2:4276375/93‑1 (MQ=255)
cTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGcc > 2:5188334/1‑93 (MQ=255)
tttGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCTGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCt < 1:6840397/93‑1 (MQ=255)
tttGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCt > 2:2635405/1‑93 (MQ=255)
tttGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCt < 2:6614738/93‑1 (MQ=255)
ttGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCtt < 1:1825785/93‑1 (MQ=255)
tGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCttt < 1:5239412/93‑1 (MQ=255)
ggTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTc < 1:1050546/93‑1 (MQ=255)
ggTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTc < 1:2579523/93‑1 (MQ=255)
ggTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTc < 2:1798616/93‑1 (MQ=255)
ggTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTc < 2:6004876/93‑1 (MQ=255)
ggTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTc < 2:3665228/93‑1 (MQ=255)
gTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCa < 2:2532167/93‑1 (MQ=255)
gTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCa > 2:3002294/1‑93 (MQ=255)
tAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCAc < 1:7077277/93‑1 (MQ=255)
aaCGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCACCa < 1:5967965/93‑1 (MQ=255)
aaCGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCACCa < 1:4425975/93‑1 (MQ=255)
aaCGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCACCa > 2:4412507/1‑93 (MQ=255)
|
CGCAGATACGCCAGCGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGG‑CCAGGAAATCTTTGGTAAACGCTTTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCACCA > NC_000913/4203103‑4203283
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TACGCCAGCGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGCTTTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCACCAGCGGCGC > NC_000913/4203109‑4203290
|
TACGCCAGCGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCC < SRR4302543.4332129/94‑1 (MQ=60)
CTCCAGCGCAGGTTCTACCTCGTTGAAGTTCGTGTATTCCGCAGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTT < SRR4302543.1636988/94‑1 (MQ=60)
CGCCAGCGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTT < SRR4302543.1478426/94‑1 (MQ=60)
GCCAGCGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGTCCGGGAAACTTTGGTAAACGC‑TTTGGGCCTTC > SRR4302543.7257611/1‑94 (MQ=60)
GCCAGCGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTTGTAAAAGCTTTT‑AGCCTTC > SRR4302543.129292/1‑94 (MQ=60)
CAGCGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTTGTAAACGCTTTTaggctttca > SRR4302543.889673/1‑85 (MQ=60)
CGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGGCAGGAAATCTTTGGTAAACGCTTTT‑AGCCTTTCAGTT > SRR4302543.183235/1‑94 (MQ=60)
CGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGGCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTT > SRR4302543.4096229/1‑94 (MQ=60)
CGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTTGTAAACGC‑TTTGAGCCTTCCAGTT > SRR4302543.6673492/1‑94 (MQ=60)
GCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGGCCGGAAATCTTTGGTAAACGCTTTT‑AGCCTTCCCGTTG > SRR4302543.4170897/1‑94 (MQ=60)
GCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCCGGGAATCTTTTGTAAACGCTTTT‑TGGCTTCCAGTTG > SRR4302543.5753919/1‑94 (MQ=60)
GAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGG < SRR4302543.6631456/94‑1 (MQ=60)
CAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGG < SRR4302543.407901/94‑1 (MQ=60)
AGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCCGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGG > SRR4302543.5427898/1‑94 (MQ=60)
AGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGGACACTTTGGTAAACAC‑TTTGAGCCTTCCCGTTGGG > SRR4302543.7683666/1‑94 (MQ=60)
AGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTTGTAAACGC‑TTTGAGCCTTCCCGTTGGG > SRR4302543.6384569/1‑94 (MQ=60)
GGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGGCAGGGAATCTTTGGTAAAAGC‑TTTGAGACTTCCAGTTGGGG > SRR4302543.5234922/1‑94 (MQ=60)
GGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGGCACGAAATCTTTGGTAAAAGC‑TTTGAGCCTTCCCGGTGGGC > SRR4302543.5361266/1‑94 (MQ=60)
GGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCCGGCAATCTTTGGGAAACGC‑TTTGAGGCTTCCAGTTGGGC > SRR4302543.2768210/1‑94 (MQ=60)
GGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGC > SRR4302543.1793881/1‑94 (MQ=60)
GTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTTGTAAACGC‑TTTGAGCCTTCCCGTTTGGCC > SRR4302543.2038175/1‑94 (MQ=60)
TTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCACGAAATCTTTGGTGAACGC‑TTTGAGCCTTTCAGTTGGGCCC > SRR4302543.2792824/1‑94 (MQ=60)
TCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGGAATCTTTGGTAAACGC‑TTTGAGCCTTCCCGTTGGGCCGC > SRR4302543.3664719/1‑94 (MQ=60)
CTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCCGGGAATCTTTGGTGAAAGCTTTT‑AGGCTTCCCGTTGGGGCGCA > SRR4302543.4945561/1‑94 (MQ=60)
CTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAAACTTTGGGAAACGC‑TTTGAGCCTTCCCGTTGGGCCGCC > SRR4302543.2795858/1‑94 (MQ=60)
TACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGGCAGGGAATCTTTGGTAAAAGC‑TTTGAGCCTTCCCGTTTGGGCGCAC > SRR4302543.4120220/1‑94 (MQ=60)
TACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGGAATCTTTGGTAAACGC‑TTTGAGCCCTCCAGTTGGGGCGCAC > SRR4302543.309284/1‑94 (MQ=60)
TACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAAACTTTTGTAAACGCTTTT‑AGCCTTCCCGTTTGGCCGCAC > SRR4302543.817996/1‑94 (MQ=60)
CCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTTGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCcccc > SRR4302543.650824/1‑90 (MQ=60)
CCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCT < SRR4302543.7191585/94‑1 (MQ=60)
CTCGGTGAAGTTCTGGTATTCCGCCGTAGGGGTCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCCCCTG < SRR4302543.6090886/94‑1 (MQ=60)
CTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGGCAGGAAAACTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGGCGCACCTG > SRR4302543.2164963/1‑94 (MQ=60)
CTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCCGGAAAACTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCCG > SRR4302543.915475/1‑94 (MQ=60)
CTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTTGTAAACGC‑TTTGAGCCTTCCCGTTGGGCCGCACCTG > SRR4302543.6720528/1‑94 (MQ=60)
CTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTG < SRR4302543.4837656/94‑1 (MQ=60)
CTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTG < SRR4302543.836665/94‑1 (MQ=60)
CTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAAAGCTTTT‑TGCCTTTCAGTTGGGGCGCACCTG > SRR4302543.63386/1‑94 (MQ=60)
CGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGGCTGGGAAACTTTGGTTAAAGCTTTT‑AGCCCTCCCGTTGGGCCGCCCCTGCG > SRR4302543.6678407/1‑94 (MQ=37)
CGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCG < SRR4302543.7218879/94‑1 (MQ=60)
CGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCG < SRR4302543.1201635/94‑1 (MQ=60)
CGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCG > SRR4302543.7803920/1‑94 (MQ=60)
GTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGGCAGGGAATCTTTGGTAAACGCTTTT‑AGCCTTCCAGTTGGGGCGCACCTGCGG‑T > SRR4302543.875921/1‑94 (MQ=60)
TGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGCTTTT‑AGCCTTCCAGTTGGGCCGCACCTCCGG‑TT > SRR4302543.6420292/1‑94 (MQ=60)
TGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TT < SRR4302543.1178523/94‑1 (MQ=60)
AGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCCGGAAATCTTTGGGAAAAGC‑TTTGAGCCTTTCAGTTGGGCCCCACCCGCGG‑GTGGG > SRR4302543.4607495/1‑94 (MQ=59)
AGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCCGTTGGGGCGCACCTGCGG‑GTGGG > SRR4302543.5464670/1‑94 (MQ=60)
GTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCCGGAAATCTTTGGTAAAAGCTTTT‑AGCCTTCCCGTTGGGGCGCGCCTGCGGTTTGGG > SRR4302543.313616/1‑94 (MQ=60)
GTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCCGTTGGGGCGCACCTGCGG‑TTGGGC > SRR4302543.3590298/1‑94 (MQ=60)
GTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAAACTTTGGTAAACGC‑TTTGTGCCTTCCCGTTGGGCCGCACCCGCGG‑GTGGGC > SRR4302543.2166379/1‑94 (MQ=60)
CTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTTGTAAACGC‑TTTGTGGCCTCCCGTTGGGCCGCACCCGCCG‑TTGGGCCGA > SRR4302543.6740160/1‑94 (MQ=59)
CTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGCTTTT‑AGCCTTCCAGTTGGGGCGCACCcgccgctggggcga > SRR4302543.1885021/1‑80 (MQ=60)
GGTATTCCGCCGTAGGGATCTTATGGCGGGCCCGGGAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑GTGGGCCGAAG > SRR4302543.1991081/1‑94 (MQ=60)
GGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAG < SRR4302543.3825918/94‑1 (MQ=60)
GTATTCCGCCGTAGGGATCTTATGGCGGGCCCGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCCCCTGCGG‑TTGGGCCGGAGA > SRR4302543.1019512/1‑94 (MQ=60)
GTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGA < SRR4302543.1356985/94‑1 (MQ=60)
ATTCCGCCGTAGGGATCTTATGGCGGGCCCGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCCGCGG‑TTGGGCCGAAGGTT > SRR4302543.7615303/1‑94 (MQ=60)
ATTCCGCCGTAGGGATCTTATGGCGGGCCAGGGAAACTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGGCGCAACTGCGG‑TTGGGCCGAAGAGT > SRR4302543.833902/1‑94 (MQ=60)
ATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGCTTTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGAT < SRR4302543.7833674/94‑1 (MQ=60)
ATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGAAT > SRR4302543.1048359/1‑94 (MQ=60)
ATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAAACCTTTTG‑GCCTTCCCGTTGGGCCGCACCgcgggttgggcggcaagtt > SRR4302543.4061161/1‑75 (MQ=60)
TTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTT < SRR4302543.4041755/94‑1 (MQ=60)
TTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTT < SRR4302543.776785/94‑1 (MQ=60)
TCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGGCGAAGATTTT > SRR4302543.5869668/1‑94 (MQ=60)
CCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTC < SRR4302543.897133/94‑1 (MQ=60)
CCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTC < SRR4302543.4749838/94‑1 (MQ=60)
GCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAG < SRR4302543.6322373/94‑1 (MQ=60)
GCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAG < SRR4302543.6520064/94‑1 (MQ=60)
GCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAG < SRR4302543.377517/94‑1 (MQ=60)
ccctaaggaatctgaGGCGGGCCAAGAAATTTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAGC < SRR4302543.7713080/79‑1 (MQ=60)
CCGTAGGGATCTTATGGCGGGCCCGGGAATCTTTTGTAAACGC‑TTTGAGCCTTCCAGTTGGGTCGCACCCGCGG‑GTGGGGCGTAGATTTTCtac > SRR4302543.7305231/1‑91 (MQ=43)
CGTAGGGATCTTATGGCGGGCCAGGAAATCTTTTGTAAAAGCTTTT‑AGCCTTCCAGTTGGGGCGGACCTGCGG‑TTGGGGCGCAGATTTTtaagc > SRR4302543.7286360/1‑89 (MQ=60)
CGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAGCC < SRR4302543.7902797/94‑1 (MQ=60)
GTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAGCCC < SRR4302543.4583802/94‑1 (MQ=60)
GTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑GTGGGCCGAAGATTTTCAGCCC > SRR4302543.1767986/1‑94 (MQ=60)
TAGGGATCTTATGGCGGGCCAGGAAATCTTTTGTAAACGC‑TTTGAGCCTTCCAGGTGGGCCGCACCTGCGG‑TTGGGGCGAAGATTTTCAGCCCG > SRR4302543.2004391/1‑94 (MQ=60)
TAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAGCCCG < SRR4302543.6702312/94‑1 (MQ=60)
AGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGGCGCACCTGCGG‑TTGGGGCGAAGATTTTCTGGCCGG > SRR4302543.3927709/1‑94 (MQ=60)
AGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAGCCCGG < SRR4302543.3785744/94‑1 (MQ=60)
GGGATCTTATGGCGGGCCAGGAAATCTTTTGTAAAAGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCATCCCGGG > SRR4302543.6072820/1‑94 (MQ=60)
GGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCCGTTGGGCCGCACCTGCGG‑TTGGGGCGAAGATTTTCAGCCCCGC > SRR4302543.4639426/1‑94 (MQ=60)
GGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAGCCCGGC < SRR4302543.2799385/94‑1 (MQ=60)
GGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACACGTTT‑AGCCTTCCAGTTCGGCCGCACCTGCGG‑GTGGGCCGGAGATTTTCATCCCGGC > SRR4302543.5224649/1‑94 (MQ=60)
GGGATCTTATGGCGGGCCAGGAAAACTTTTGTAAACGC‑CTTGAGCCTTCCCCTTGGGCCGCACCTGCGG‑TTGGGCCGAAAAGTTTCAGCCCTGC > SRR4302543.6233419/1‑94 (MQ=52)
GGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAGCCCGGCG > SRR4302543.2644732/1‑94 (MQ=60)
ATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAGCCCCGCGGC > SRR4302543.7306742/1‑94 (MQ=60)
ATCTTATGGCGGGCCAGGAAATCTTTGGGAAACGC‑CTTGAGCCTTCCCGTTGGGCCGCACCCCCGG‑GTGGGGCGAAAATTTTTCGCCCGGCGGC > SRR4302543.4921593/1‑94 (MQ=32)
TCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAGCCCGGCGGCG < SRR4302543.6994237/94‑1 (MQ=60)
TTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAGCCCGGCGGCGCG < SRR4302543.1102322/94‑1 (MQ=60)
TTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAGCCCGGCGGCGCG < SRR4302543.5979529/94‑1 (MQ=60)
TATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAGCCCGGCGGCGCGG < SRR4302543.2335017/94‑1 (MQ=60)
ATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGA > SRR4302543.5173368/1‑94 (MQ=60)
GGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAG < SRR4302543.4204013/94‑1 (MQ=60)
GCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGG < SRR4302543.4165756/94‑1 (MQ=60)
GGGGCCAGAAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TGGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGT < SRR4302543.1864472/94‑1 (MQ=60)
CGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGT > SRR4302543.4860384/1‑94 (MQ=60)
CGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGT > SRR4302543.4934007/1‑94 (MQ=60)
CGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGT < SRR4302543.237238/94‑1 (MQ=60)
GGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTAT < SRR4302543.4305089/94‑1 (MQ=60)
GGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTAT < SRR4302543.5815142/94‑1 (MQ=60)
GGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTAT < SRR4302543.7970949/94‑1 (MQ=60)
GCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATC < SRR4302543.897623/94‑1 (MQ=60)
CCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCG > SRR4302543.181879/1‑94 (MQ=60)
CCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCG < SRR4302543.2442853/94‑1 (MQ=60)
GGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACC < SRR4302543.1051836/94‑1 (MQ=60)
GGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACC > SRR4302543.811122/1‑94 (MQ=60)
AAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCAC > SRR4302543.2113524/1‑94 (MQ=60)
AAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCAC < SRR4302543.5253939/94‑1 (MQ=60)
AAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCAC < SRR4302543.2510600/94‑1 (MQ=60)
AAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCAC < SRR4302543.787159/94‑1 (MQ=60)
AATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACG > SRR4302543.5874589/1‑94 (MQ=60)
ATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGC > SRR4302543.4125709/1‑94 (MQ=60)
ATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGC > SRR4302543.3026295/1‑94 (MQ=60)
TCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCC < SRR4302543.2368001/94‑1 (MQ=60)
TCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCC < SRR4302543.7403513/94‑1 (MQ=60)
CTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCT > SRR4302543.5850232/1‑94 (MQ=60)
CTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCT > SRR4302543.3633076/1‑94 (MQ=60)
CTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCT > SRR4302543.2334674/1‑94 (MQ=60)
TTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCTGCACCTGCGG‑TTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTT < SRR4302543.6904962/94‑1 (MQ=60)
TTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTT > SRR4302543.6768184/1‑94 (MQ=60)
TTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTT > SRR4302543.4254949/1‑94 (MQ=60)
TTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTT < SRR4302543.6237519/94‑1 (MQ=60)
TTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTT < SRR4302543.1842179/94‑1 (MQ=60)
TGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTC < SRR4302543.5286632/94‑1 (MQ=60)
GGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCA > SRR4302543.4741792/1‑94 (MQ=60)
GGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCA < SRR4302543.1059953/94‑1 (MQ=60)
GGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCA < SRR4302543.2603014/94‑1 (MQ=60)
GGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCA < SRR4302543.2603015/94‑1 (MQ=60)
GTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCAC < SRR4302543.5506264/94‑1 (MQ=60)
TAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCACC < SRR4302543.7146006/94‑1 (MQ=60)
AAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCACCA < SRR4302543.3720426/94‑1 (MQ=60)
AACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCACCAG < SRR4302543.4466078/94‑1 (MQ=60)
AACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCACCAG < SRR4302543.6022614/94‑1 (MQ=60)
ACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCACCAGC < SRR4302543.2874237/94‑1 (MQ=60)
ACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCACCAGC < SRR4302543.2874238/94‑1 (MQ=60)
CGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCACCAGCG > SRR4302543.7429739/1‑94 (MQ=60)
gcTTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCACCAGCGG > SRR4302543.6473469/3‑94 (MQ=60)
gcTTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCACCAGCGG < SRR4302543.1638904/92‑1 (MQ=60)
gcTTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATAGACCACGCCTTTCACCAGCGG > SRR4302543.5321436/3‑94 (MQ=60)
CTTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCACCAGCGGC > SRR4302543.2189333/1‑94 (MQ=60)
CTTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCACCAGCGGC < SRR4302543.4231349/94‑1 (MQ=60)
TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCACCAGCGGCG < SRR4302543.2099677/94‑1 (MQ=60)
TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCACCAGCGGCG > SRR4302543.3579018/1‑94 (MQ=60)
TTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCACCAGCGGCG > SRR4302543.3774521/1‑94 (MQ=60)
TTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCACCAGCGGCGC > SRR4302543.5846970/1‑94 (MQ=60)
TTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCACCAGCGGCGC > SRR4302543.3660141/1‑94 (MQ=60)
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TACGCCAGCGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGCTTTTGAGCCTTCCAGTTGGGCCGCACCTGCGG‑TTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCACCAGCGGCGC > NC_000913/4203109‑4203290
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
