Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1696 279.3 15874187 97.8% 15524954 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GAGCGATGTCACGCACCGCCTGGGCGAAGCTTTCAAAGCTTCCACGGTGAGCGATTAATGGCTCCAGGCTTAACTTACGTTCTGTCAGCAACCGGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGGAGTAGTTCATCCAACTGCCGATAACCGTCAGCTCTTTACGCAATATTTTGCCAAA  >  NC_000913/2169893‑2170079
                                                                                             |                                                                                             
GAGCGATGTCACGCACCGCCTGGGCGAAGCTTTCAAAGCTTCCACGGTGAGCGATTAATGGCTCCAGGCTTAACTTACGTTCTGTCAGCAACCA                                                                                               <  SRR4302543.4670105/94‑1 (MQ=60)
 AGCGATGTCACGCACCGCCTGGGCGAAGCTTTCAAAGCTTCCACGGTGAGCGATTAATGGCTCCAGGCTTAACTTACGTTCTGTCAGCAACCGG                                                                                              >  SRR4302543.3233901/1‑94 (MQ=60)
 AGCGATGTCACGCACCGCCTGGGCGAAGCTTTCAAAGCTTCCACGGTGAGCGATTAATGGCTCCAGGCTTAACTTACGTTCTGTCAGCAACCAG                                                                                              <  SRR4302543.7174316/94‑1 (MQ=60)
 AGCGATGTCACGCACCGCCTGGGCGAAGCTTTCAAAGCTTCCACGGTGAGCGATTAATGGCTCCAGGCTTAACTTACGTTCTGTCAGCAACCAG                                                                                              >  SRR4302543.3113708/1‑94 (MQ=60)
   CGATGTCACGCACCGCCTGGGCGAAGCTTTCAAAGCTTCCACGGTGAGCGATTAATGGCTCCAGGCTTAACTTACGTTCTGTCAGCAACCGGCT                                                                                            >  SRR4302543.47879/1‑94 (MQ=60)
      TGTCACGCACCGCCTGGGCGAAGCTTTCAAAGCTTCCACGGTGAGCGATTAATGGCTCCAGGCTTAACTTACGTTCTGTCAGCAACCAGCTCGC                                                                                         >  SRR4302543.384795/1‑94 (MQ=60)
       GTCACGCACCGCCTGGGCGAAGCTTTCAAAGCTTCCACGGTGAGCGATTAATGGCTCCAGGCTTAACTTACGTTCTGTCAGCAACCGGCTCGCC                                                                                        >  SRR4302543.6348699/1‑94 (MQ=60)
       GTCACGCACCGCCTGGGCGAAGCTTTCAAAGCTTCCACGGTGAGCGATTAATGGCTCCAGGCTTAACTTACGTTCTGTCAGCAACCAGCTCGCC                                                                                        >  SRR4302543.1987475/1‑94 (MQ=60)
          ACGCACCGCCTGGGCGAAGCTTTCAAAGCTTCCACGGTGAGCGATTAATGGCTCCAGGCTTAACTTACGTTCTGTCAGCAACCGGCTCGCCGTT                                                                                     >  SRR4302543.1847696/1‑94 (MQ=60)
           CGCACCGCCTGGGCGAAGCTTTCAAAGCTTCCACGGTGAGCGATTAATGGCTCCAGGCTTAACTTACGTTCTGTCAGCAACCAGCTCGCCGTTT                                                                                    >  SRR4302543.697879/1‑94 (MQ=60)
           CGCACCGCCTGGGCGAAGCTTTCAAAGCTTCCACGGTGAGCGATTAATGGCTCCAGGCTTAACTTACGTTCTGTCAGCAACCAGCTCGCCATTT                                                                                    >  SRR4302543.789093/1‑94 (MQ=60)
            GCACCGCCTGGGCGAAGCTTTCAAAGCTTCCACGGTGAGCGATTAATGGCTCCAGGCTTAACTTACGTTCTGTCAGCAACCAGCTCGCCGTTTC                                                                                   <  SRR4302543.2629483/94‑1 (MQ=60)
              ACCGCCTGGGCGAAGCTTTCAAAGCTTCCACGGTGAGCGATTAATGGCTCCAGGCTTAACTTACGTTCTGTCAGCAACCAGCTCGCCGTTTCCC                                                                                 <  SRR4302543.6424305/94‑1 (MQ=60)
               CCGCCTGGGCGAAGCTTTCAAAGCTTCCACGGTGAGCGATTAATGGCTCCAGGCTTAACTTACGTTCTGTCAGCAACCGGCTCGCCGTTTCCCA                                                                                >  SRR4302543.2033215/1‑94 (MQ=60)
                 GCCTGGGCGAAGCTTTCAAAGCTTCCACGGTGAGCGATTAATGGCTCCAGGCTTAACTTACGTTCTGTCAGCAACCAGCTCGCCGTTTCCCACT                                                                              >  SRR4302543.563866/1‑94 (MQ=60)
                  CCTGGGCGAAGCTTTCAAAGCTTCCACGGTGAGCGATTAATGGCTCCAGGCTTAACTTACGTTCTGTCAGCAACCAGCTCGCCGTTTCCCACTC                                                                             >  SRR4302543.1148044/1‑94 (MQ=60)
                  CCTGGGCGAAGCTTTCAAAGCTTCCACGGTGAGCGATTAATGGCTCCAGGCTTAACTTACGTTCTGTCAGCAACCAGCTCGCCGTTTCCCACTC                                                                             >  SRR4302543.6305104/1‑94 (MQ=60)
                      GGCGAAGCTTTCAAAGCTTCCACGGTGAGCGATTAATGGCTCCAGGCTTAACTTACGTTCTGTCAGCAACCAGCTCGCCGTTTCCCACTCCTGC                                                                         >  SRR4302543.5564170/1‑94 (MQ=60)
                          AAGCTTTCAAAGCTTCCACGGTGAGCTATTAATGGCTCCAGGCTTAACTTACGTTCTGTCAGCAACCGGCTCGCCGTTTCCCACTCCTGCCCCG                                                                     <  SRR4302543.840592/94‑1 (MQ=60)
                          AAGCTTTCAAAGCTTCCACGGTGAGCGATTAATGGCTCCAGGCTTAACTTACGTTCTGTCAGCAACCAGCTCGCCGTTTCCCACTCCTGCCCCG                                                                     >  SRR4302543.4825889/1‑94 (MQ=60)
                          AAGCTTTCAAAGCTTCCACGGTGAGCGATTAATGGCTCCAGGCTTAACTTACGTTCTGTCAGCAACCAGCTCGCCGTTTCCCACTCCTGCCCCG                                                                     <  SRR4302543.7525536/94‑1 (MQ=60)
                           AGCTTTCAAAGCTTCCACGGTGAGCGATTAATGGCTCCAGGCTTAACTTACGTTCTGTCAGCAACCAGCTCGCCGTTTCCCACTCCTGCCCCGG                                                                    >  SRR4302543.6429930/1‑94 (MQ=60)
                             CTTTCAAAGCTTCCACGGTGAGCGATTAATGGCTCCAGGCTTAACTTACGTTCTGTCAGCAACCGGCTCGCCGTTTCCCACTCCTGCCCCGGCC                                                                  <  SRR4302543.4298303/94‑1 (MQ=60)
                                TCAAAGCTTCCACGGTGAGCGATTAATGGCTCCAGGCTTAACTTACGTTCTGTCAGCAACCGGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAG                                                               <  SRR4302543.2868372/94‑1 (MQ=60)
                                 caacgcttccgagggGAGCGATTAATGGCTCCAGGCTTAACTTACGTTCTGTCAGCAACCAGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGG                                                              <  SRR4302543.1474141/79‑1 (MQ=60)
                                 CAAAGCTTTCAAGGTGAACGATTAATGGCCGCAGGCTTAACTTACGTTCTGTCAGCAACCAGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGG                                                              <  SRR4302543.4174173/94‑1 (MQ=60)
                                 CAAAGCTTCAACGGTGAGCGATTAATGGCTCCAGGCTTAACTTACGTTCTGTCAGCAACCAGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGG                                                              <  SRR4302543.1283985/94‑1 (MQ=60)
                                  AAAGCTTCCACGGTGAGCGATTAATGGCTCCAGGCTTAACTTACGTTCTGTCAGCAACCGGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGG                                                             <  SRR4302543.3853096/94‑1 (MQ=60)
                                  AAAGCTTCCACGGTGAGCGATTAATGGCTCCAGGCTTAACTTACGTTCTGTCAGCAACCAGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGG                                                             <  SRR4302543.7117304/94‑1 (MQ=60)
                                  AAAGCTTCCACGGTGAGCGATTAATGGCTCCAGGCTTAACTTACGTTCTGTCAGCAACCAGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGG                                                             >  SRR4302543.7939639/1‑94 (MQ=60)
                                   AAGCTTCCACGGTGAGCGATTAATGGCTCCAGGCTTAACTTACGTTCTGTCAGCAACCAGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGC                                                            >  SRR4302543.4059600/1‑94 (MQ=60)
                                     GCTTCCACGGTGAGCGATTAATGGCTCCAGGCTTAACTTACGTTCTGTCAGCAACCGGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTG                                                          <  SRR4302543.860199/94‑1 (MQ=60)
                                     GCTTCCACGGTGAGCGATTAATGGCTCCAGGCTTAACTTACGTTCTGTCAGCAACCAGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTG                                                          >  SRR4302543.2332977/1‑94 (MQ=60)
                                     GCTTCCACGGTGAGCGATTAATGGCTCCAGGCTTAACTTACGTTCTGTCAGCAACCAGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTG                                                          <  SRR4302543.2076877/94‑1 (MQ=60)
                                      CTTCCACGGTGAGCGATTAATGGCTCCAGGCTTAACTTACGTTCTGTCAGCAACCAGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGG                                                         >  SRR4302543.7879880/1‑94 (MQ=60)
                                      CTTCAACGGTGAGCGATTAATGCCTCCAGGCTTAACTTACGTTCTGTCAGCAACCAGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGG                                                         <  SRR4302543.2967178/94‑1 (MQ=60)
                                        TCCACGGTGAGCGATTAATGGCTCCAGGCTTAACTTGCGTTCTGTCAGCAACCGGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGGAG                                                       <  SRR4302543.7510554/94‑1 (MQ=60)
                                         cagcggggagggtttaattgccCCAGGCTTAACTTACGTTCTGTCAGCAACCGGCTCGCCGTTTCCCTCTCCTGCCCCGGCCAAGGGCTGGAGT                                                      <  SRR4302543.2258699/72‑1 (MQ=60)
                                         CCCCGGTGAGCGATTAATGGCTCCAGGCTTAACTTACGTTCTGTCAGCAACCGGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGGAGT                                                      <  SRR4302543.2258705/94‑1 (MQ=60)
                                         CCACGGTGAGCGATTAATGGCTCCAGGCTTAACTTACGTTCTGTCAGCAACCAGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGGAGT                                                      >  SRR4302543.5223958/1‑94 (MQ=60)
                                          CACGGTGAGCGATTAATGGCTCCAGGCTTAACTTACGTTCTGTCAGCAACCGGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGGAGTG                                                     >  SRR4302543.5196428/1‑94 (MQ=60)
                                           ACGGTGAGCGATTAATGGCTCCAGGCTTAACTTACGTTCTGTCAGCAACCAGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGGAGTAG                                                    >  SRR4302543.3369070/1‑94 (MQ=60)
                                            CGGTGAGCGATTAATGGCTCCAGGCTTAACTTACGTTCTGTCAGCAACCGGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGGAGTAGT                                                   >  SRR4302543.5138201/1‑94 (MQ=60)
                                              GTGAGCGATTAATGGCTCCAGGCTTAACTTACGTTCTGTCAGCAACCAGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGGAGTAGTTC                                                 <  SRR4302543.2887484/94‑1 (MQ=60)
                                                GAGCTATTAATGGCTCCAGGCTTAACTTACGTTCTGTCAGCAACCGGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGGAGTAGTTCAT                                               <  SRR4302543.3023287/94‑1 (MQ=60)
                                                GAGCGATTAATGGCTCCAGGCTTAACTTACGTTCTGTCAGCAACCAGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGGAGTAGTTCAT                                               <  SRR4302543.922178/94‑1 (MQ=60)
                                                GAGCGATTAATGGCTCCAGGCTTAACTTACGTTCTGTCAGCAACCAGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGGAGTAGTTCAT                                               <  SRR4302543.6095799/94‑1 (MQ=60)
                                                GAGCGATTAATGGCTCCAGGCTTAACTTACGTTCTGTCAGCAACCAGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGGAGTAGTTCAT                                               >  SRR4302543.2990085/1‑94 (MQ=60)
                                                  GCGATTAATGGCTCCAGGCTTAACTTACGTTCTGTCAGCAACCGGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGGAGTAGTTCATCC                                             >  SRR4302543.1768360/1‑94 (MQ=60)
                                                  GCGATTAATGGCTCCAGGCTTAACTTACGTTCTGTCAGCAACCGGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGGAGTAGTTCATCC                                             <  SRR4302543.6182998/94‑1 (MQ=60)
                                                   CGATTAATGGCTCCAGGCTTAACTTACGTTCTGTCAGCAACCGGCTCGCCGTTTCCCACTCCTTCCCCGGCCAAGGGCTGGAGTAGTTCATCCA                                            <  SRR4302543.5345836/94‑1 (MQ=60)
                                                   CGATTAATGGCTCCAGGCTTAACTTACGTTCTGTCAGCAACCGGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGGAGTAGTTCATCCA                                            >  SRR4302543.5871657/1‑94 (MQ=60)
                                                   CGATTAATGGCTCCAGGCTTAACTTACGTTCTGTCAGCAACCAGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGGAGTAGTTCATCCA                                            >  SRR4302543.354593/1‑94 (MQ=60)
                                                   CGATTAATGGCTCCAGGCTTAACTTACGTTCTGTCAGCAACCAGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGGAGTAGTTCATCCA                                            >  SRR4302543.5972551/1‑94 (MQ=60)
                                                      TTAATGGCTCCAGGCTTAACTTACGTTCTGTCAGCAACCAGCTGGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGGAGTAGTTCATCCAACT                                         >  SRR4302543.5708695/1‑94 (MQ=60)
                                                       TAATGGCTCCAGGCTTAACTTACGTTCTGTCAGCAACCAGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGGAGTAGTTCATCCAACTG                                        <  SRR4302543.8011105/94‑1 (MQ=60)
                                                         ATGGCTCCAGGCTTAACTTACGTTCTGTCAGCAACCAGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGGAGTAGTTCATCCAACTGCC                                      <  SRR4302543.3035515/94‑1 (MQ=60)
                                                          TGGCTCCAGGCTTAACTTACGTTCTGTCAGCAACCGGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGGAGTAGTTCATCCAACTGCCG                                     <  SRR4302543.1725523/94‑1 (MQ=60)
                                                          TGGCTCCAGGCTTAACTTACGTTCTGTCAGCAACCGGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGGAGTAGTTCATCCAACTGCCG                                     <  SRR4302543.4749119/94‑1 (MQ=60)
                                                           GGCTCCAGGCTTAACTTACGTTCTGTCAGCAACCGGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGGAGTAGTTCATCCAACTGCCGA                                    <  SRR4302543.5654279/94‑1 (MQ=60)
                                                            GCTCCAGGCTTAACTTACGTTCTGTCAGCAACCAGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGGAGTAGTTCATCCAACTGCCGAT                                   >  SRR4302543.5800160/1‑94 (MQ=60)
                                                               CCAGGCTTAACTTACGTTCTGTCAGCAACCAGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGGAGTAGTTCATCCAACTGCCGATAAC                                >  SRR4302543.7851512/1‑94 (MQ=60)
                                                               CCAGGCTTAACTTACGTTCTGTCAGCAACCAGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGGAGTAGTTCATCCAACTGCCGATAAC                                <  SRR4302543.5527905/94‑1 (MQ=60)
                                                               CCAGGCTTAACTTACGTTCTGTCAGCAACCAGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGGAGTAGTTCATCCAACTGCCGATAAC                                >  SRR4302543.1762402/1‑94 (MQ=60)
                                                                CAGGCTTAACTTACGTTCTGTCAGCAACCAGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGGAGTAGTTCATCCAACTGCCGATAACC                               >  SRR4302543.3904541/1‑94 (MQ=60)
                                                                 AGGCTTAACTTACGTTCTGTCAGCAACCAGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGGAGTAGTTCATCCTACTGCCGATAACCG                              <  SRR4302543.5276563/94‑1 (MQ=60)
                                                                 AGGCTTAACTTACGTTCTGTCAGCAACCAGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGGAGTAGTTCATCCAACTGCCGATAACCG                              >  SRR4302543.3330030/1‑94 (MQ=60)
                                                                  GGCTTAACTTACGTTCTGTCAGCAACCGGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGGAGTAGTTCATCCAACTGCCGATAACCGT                             >  SRR4302543.6139998/1‑94 (MQ=60)
                                                                  GGCTTAACTTACGTTCTGTCAGCAACCAGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGGAGTAGTTCATCCAACTGCCGATAACCGT                             >  SRR4302543.5365971/1‑94 (MQ=60)
                                                                   GCTTAACTTACGTTCTGTCAGCAACCAGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGGAGTAGTTCATCCAACTGCCGATAACCGTC                            <  SRR4302543.2304471/94‑1 (MQ=60)
                                                                   GCTTAACTTACGTTCTGTCAGCAACCAGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGGAGTAGTTCATCCAACTGCCGATAACCGTC                            >  SRR4302543.1784656/1‑94 (MQ=60)
                                                                    CTTAACTTACGTTCTGTCAGCAACCAGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGGAGTAGTTCATCCAACTGCCGATAACCGTCA                           <  SRR4302543.238759/94‑1 (MQ=60)
                                                                     TTAACTTACGTTCTGTCAGCAACCGGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGGAGTAGTTCATCCAACTGCCGATAACCGTCAG                          >  SRR4302543.1295270/1‑94 (MQ=60)
                                                                     TTAACTTACGTTCTGTCAGCAACCAGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGGAGTAGTTCATCCAACTGCCGATAACCGTCCG                          >  SRR4302543.2395880/1‑94 (MQ=60)
                                                                     TTAACTTACGTTCTGTCAGCAACCAGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGGAGTAGTTCATCCAACTGCCGATAACCGTCAG                          <  SRR4302543.234547/94‑1 (MQ=60)
                                                                      TAACTTACGTTCTGTCAGCAACCGGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGGAGTAGTTCATCCAACTGCCGATAACCGTCAGC                         <  SRR4302543.608409/94‑1 (MQ=60)
                                                                      TAACTTACGTTCTGTCAGCAACCAGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGGAGTAGTTCATCCAACTGCCGATAACCGTCAGC                         >  SRR4302543.6599789/1‑94 (MQ=60)
                                                                       AACTTACGTTCTGTCAGCAACCGGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGGAGTAGTTCATCCAACTGCCGATAACCGTCAGCT                        <  SRR4302543.7058175/94‑1 (MQ=60)
                                                                        ACTTACGTTCTGTCAGCAACCGGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGGAGTAGTTCATCCAACTGCCGATAACCGTCAGCTC                       >  SRR4302543.2810996/1‑94 (MQ=60)
                                                                        ACTTACGTTCTGTCAGCAACCAGCTCGCCGTTTCCCACTCCTGCCCCGGCCCAGGGCTGGAGTAGCTCATCCAACAGCCGATAACCatctactt                       >  SRR4302543.4629157/1‑86 (MQ=60)
                                                                        ACTTACGTTCTGTCAGCAACCAGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGGAGTAGTTCATCCAACTGCCGATAACCGTCAGCTC                       >  SRR4302543.6137697/1‑94 (MQ=60)
                                                                         CTTACGTTCTGTCAGCAACCAGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGGAGTAGTTCATCCAACTGCCGATAACCGTCAGCTCT                      >  SRR4302543.5356903/1‑94 (MQ=60)
                                                                         CTTACGTTCTGTCAGCAACCAGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGGAGTAGTTCATCCAACTGCCGATAACCGTCAGCTCT                      >  SRR4302543.4458890/1‑94 (MQ=60)
                                                                         CTTACGTTCTGTCAGCAACCAGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGGAGTAGTTCATCCAACTGCCGATAACCGTCAGCTCT                      <  SRR4302543.5847529/94‑1 (MQ=60)
                                                                         CTTACGTTCTGTCAGCAACCAGCTCGCCGTTTCACACTCCCGCCCCGGCCAcgggcggtgctggttcatccaactgcgtagcgtcgtcagtcat                      >  SRR4302543.5356902/1‑51 (MQ=47)
                                                                          CTACGTTCTGTCAGCAACCAGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGGAGTAGTTCATCCAACTGCCGATAACCGTCAGCTCTT                     <  SRR4302543.5921498/94‑1 (MQ=60)
                                                                             CGTTCTGTCAGCAACCAGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGGAGTAGTTCATCCAACTGCCGATAACCGTCAGCTCTTTAC                  <  SRR4302543.2637204/94‑1 (MQ=60)
                                                                             CGTTCTGTCAGCAACCAGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGGAGTAGTTCATCCAACTGCCGATAACCGTCAGCTCTTTAC                  <  SRR4302543.3060808/94‑1 (MQ=60)
                                                                              GTTCTGTCAGCAACCGGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGGAGTAGTTCATCCAACTGCCGATAACCGTCAGCTCTTTACG                 <  SRR4302543.3943622/94‑1 (MQ=60)
                                                                              GTTCTGTCAGCAACCGGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGGAGTAGTTCATCCAACTGCCGATAACCGTCAGCTCTTTACG                 >  SRR4302543.2304956/1‑94 (MQ=60)
                                                                              GTTCTGTCAGCAACCAGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGGAGTAGTTCATCCAACTGCCGATAACCGTCAGCTCTTTACG                 >  SRR4302543.4078302/1‑94 (MQ=60)
                                                                              GTTCTGTCAGCAACCAGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGGAGTAGTTCATCCAACTGCCGATAACCGTCAGCTCTTTACG                 <  SRR4302543.7290544/94‑1 (MQ=60)
                                                                              GTTCTGTCAGCAACCAGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGGAGTAGTTCATCCAACTGCCGATAACCGTCAGCTCTTTACG                 >  SRR4302543.3447294/1‑94 (MQ=60)
                                                                                  TGTCAGCAACCGGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGGAGTAGTTCATCCAACTGCCGATAACCGTCAGCTCTTTACGCAAT             >  SRR4302543.534886/1‑94 (MQ=60)
                                                                                  TGTCAGCAACCAGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGGAGTAGTTCATCCAACTGCCGATAACCGTCAGCTCTTTACGCAAT             <  SRR4302543.7794789/94‑1 (MQ=60)
                                                                                    TCAGCAACCGGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGGAGTAGTTCATCCAACTGCCGATAACCGTCAGCTCTTTACGCAATAT           >  SRR4302543.6669316/1‑94 (MQ=60)
                                                                                     CAGCAACCAGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGGAGTAGTTCATCCAACTGCCGATAACCGTCAGCTCTTTACGCAATATT          >  SRR4302543.4178/1‑94 (MQ=60)
                                                                                      AGCAACCAGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGGAGTAGTTCATCCAACTGCCGATAACCGTCAGCTCTTTACGCAATATTT         >  SRR4302543.2945511/1‑94 (MQ=60)
                                                                                       GCAACCGGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGGAGTAGTTCATCCAACTGCCGATAACCGTCAGCTCTTTACGCAATATTTT        <  SRR4302543.2456010/94‑1 (MQ=60)
                                                                                       GCAACCAGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGGAGTAGTTCATCCAACTGCCGATAACCGTCAGCTCTTTACGCAATATTTT        <  SRR4302543.2743827/94‑1 (MQ=60)
                                                                                        CAACCGGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGGAGTAGTTCATCCAACTGCCGATAACCGTCAGCTCTTTACGCAATATTTTG       <  SRR4302543.2933232/94‑1 (MQ=60)
                                                                                        CAACCAGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGGAGTAGTTCATCCAACTGCCGATAACCGTCAGCTCTTTACGCAATATTTTG       <  SRR4302543.3289319/94‑1 (MQ=60)
                                                                                        CAACCAGCTCGCCATTTCCCACTCCTGCCCCGGCCAAGGGCTGGAGTAGTTCATCCAACTGCCGATAACCGTCAGCTCTTTACGCAATATTTTC       >  SRR4302543.5807074/1‑94 (MQ=60)
                                                                                         AACCGGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGGAGTAGTTCATCCAACTGCCGATAACCGTCAGCTCTTTACGCAATATTTTGC      >  SRR4302543.6808853/1‑94 (MQ=60)
                                                                                            CAGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGGAGTAGTTCATCCAACTGCCGATAACCGTCAGCTCTTTACGCAATATTTTGCCAA   >  SRR4302543.5728702/1‑94 (MQ=60)
                                                                                            CAGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGGAGTAGTTCATCCAACTGCCGATAACCGTCAGCTCTTTACGCAATATTTTGCCAA   >  SRR4302543.5832591/1‑94 (MQ=60)
                                                                                            CAGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGGAGTAGTTCATCCAACTGCCGATAACAGTCAGCTCTTCACGCAATATTTTGCCAA   >  SRR4302543.5728703/1‑94 (MQ=60)
                                                                                             AGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGGAGTAGTTCATCCAACTGCCGATAACCGTCAGCTCTTTACGCAATATTTTGCCAAA  >  SRR4302543.3392223/1‑94 (MQ=60)
                                                                                             |                                                                                             
GAGCGATGTCACGCACCGCCTGGGCGAAGCTTTCAAAGCTTCCACGGTGAGCGATTAATGGCTCCAGGCTTAACTTACGTTCTGTCAGCAACCGGCTCGCCGTTTCCCACTCCTGCCCCGGCCAAGGGCTGGAGTAGTTCATCCAACTGCCGATAACCGTCAGCTCTTTACGCAATATTTTGCCAAA  >  NC_000913/2169893‑2170079

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑