Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,883,199 |
C→T |
L171L (CTG→TTG) |
yeaW → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,883,199 | 0 | C | T | 99.1%
| 399.9
/ NA
| 112 | L171L (CTG→TTG) | yeaW | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (57/54); minor base G (0/1); total (57/55) |
| Fisher's exact test for biased strand distribution p-value = 4.91e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 116 total aligned reads displayed.
CTGGTTCCGGTGCGTCTGGAAGAATATGCCGGATTCGTCTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCCTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTGGCGGCCCGCTTTACCACCCGCACGCCTGCCAACTGGAAG > NC_000913/1883109‑1883288
|
cTGGTTCCGGTGCGTCTGGAAGAATATGCCGGATTCGTCTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTg > 2:3501335/1‑93 (MQ=255)
cTGGTTCCGGTGCGTCTGGAAGAATATGCCGGATTCGTCTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTg > 1:1911002/1‑93 (MQ=255)
tGGTTCCGGTGCGTCTGGAAGAATATGCCGGATTCGTCTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTgg > 2:1762753/1‑93 (MQ=255)
tGGTTCCGGTGCGTCTGGAAGAATATGCCGGATTCGTCTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTgg > 1:2449492/1‑93 (MQ=255)
ggTTCCGGTGCGTCTGGAAGAATATGCCGGATTCGTCTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTggg < 1:464234/93‑1 (MQ=255)
gTTCCGGTGCGTCTGGAAGAATATGCCGGATTCGTCTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGgc < 1:3605541/93‑1 (MQ=255)
gTTCCGGTGCGTCTGGAAGAATATGCCGGATTCGTCTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGgc > 2:3923585/1‑93 (MQ=255)
ccGGTGCGTCTGGAAGAATATGCCGGATTCGTCTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGcgcg > 1:3241749/1‑93 (MQ=255)
ggTGCGTCTGGAAGAATATGCCGGATTCGTCTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGaa < 2:2260996/93‑1 (MQ=255)
gtgtgtCTGGAAGAATATGCCGGATTCGTCTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGaaa < 2:2174221/93‑1 (MQ=255)
gTGCGTCTGGAAGAATATGCCGGATTCGTCTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGaaa > 1:3395520/1‑93 (MQ=255)
gTGCGTCTGGAAGAATATGCCGGATTCGTCTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGaaa < 2:281204/93‑1 (MQ=255)
gTGCGCCTGGACGAATTTGCCGGCTTTGACTTCATCAACATGGACCCCAGCGCCTCGAGCGTAGCAGATCAATTACCCGGCTTGGGCGCGaaa < 2:4678197/93‑1 (MQ=255)
tGCGTCTGGAAGAATATGCCGGATTCGTCTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAg < 1:602446/93‑1 (MQ=255)
gCGTCTGGAAGAATATTCCGGATTCGCCTTCATCAACATGGCCCCCAACGCCACAAGCTTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGt < 2:4500747/93‑1 (MQ=255)
gCGTCTGGAAGAATATGCCGGATTCGTCTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGt < 1:1358094/93‑1 (MQ=255)
gTCTGGAAGAATATGCCGGATTCGTCTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGc > 2:2072316/1‑93 (MQ=255)
gTCTGGAAGAATATGCCGGATTCGTCTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGc > 2:2109985/1‑93 (MQ=255)
tCTGGAAGAATATGCCGGATTCGTCTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCt > 1:4608815/1‑93 (MQ=255)
tGGAAGAATATGCCGGATTCGTCTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTgg > 1:692247/1‑93 (MQ=255)
tGGAAGAATATGCCGGATTCGTCTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTgg > 2:894945/1‑93 (MQ=255)
gaagaaTATGCCGGATTCGTCTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGaa < 2:3930752/93‑1 (MQ=255)
gaagaaTATGCCGGATTCGTCTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGaa > 2:1851488/1‑93 (MQ=255)
gaagaaTATGCCGGATTCGTCTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGaa < 1:2143349/93‑1 (MQ=255)
gaaTATGCCGGATTCGTCTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGcc > 2:3004968/1‑93 (MQ=255)
gaaTATGCCGGATTCGTCTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCAGCTTGGGCGCGAAAGTGCTGGAAGcc > 2:1285092/1‑93 (MQ=255)
aaTATGCCGGATTCGTCTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCt < 1:3589355/93‑1 (MQ=255)
aaTATGCCGGATTCGTCTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCt > 2:2797299/1‑93 (MQ=255)
atatGCCGGATTCGTCTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTg > 1:3681530/1‑93 (MQ=255)
atatGCCGGATTCGTCTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTg > 1:1690688/1‑93 (MQ=255)
tatGCCGGATTCGTCTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGc < 1:330095/93‑1 (MQ=255)
tatGCCGGATTCGTCTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGc < 1:766781/93‑1 (MQ=255)
gCCGGATTCGTCTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCg < 2:2907570/93‑1 (MQ=255)
ccGGATTCGTCTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCgg > 1:2853040/1‑93 (MQ=255)
cGGATTCGTCTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGa < 1:2120986/93‑1 (MQ=255)
ttCGTCTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGTCTGCCCGGCAGTc > 1:2009106/1‑93 (MQ=255)
ttCGTCTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTc < 2:3458827/93‑1 (MQ=255)
ttCGTCTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTc < 1:1969232/93‑1 (MQ=255)
ttCGTCTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTc < 2:3305897/93‑1 (MQ=255)
cGTCTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCa < 2:81460/93‑1 (MQ=255)
ctCTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCAc < 1:2916790/92‑1 (MQ=255)
cTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGa < 1:2165668/93‑1 (MQ=255)
ttCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGAt > 2:1692458/1‑93 (MQ=255)
tcatcaACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATc < 1:1547636/93‑1 (MQ=255)
catcaACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCt < 2:4353844/93‑1 (MQ=255)
atcaACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTg > 1:4248328/1‑93 (MQ=255)
tcaACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGa > 1:4394324/1‑93 (MQ=255)
tcaACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGa > 1:970068/1‑93 (MQ=255)
tcaACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGa < 2:10865/93‑1 (MQ=255)
acaACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGa < 1:883889/92‑1 (MQ=255)
aaCATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGaaa < 1:608168/93‑1 (MQ=255)
aaCATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGaaa > 1:621707/1‑93 (MQ=255)
aCATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAAc < 2:1739923/93‑1 (MQ=255)
aCATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAAc < 2:3730554/93‑1 (MQ=255)
aCATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAAc > 2:2069060/1‑93 (MQ=255)
cATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGTCCGGAAGTCCACGATCTGAAAcg > 2:3640436/1‑92 (MQ=255)
aTGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTg > 1:2582755/1‑93 (MQ=255)
aTGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTg > 2:4267891/1‑93 (MQ=255)
aTGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTg > 1:3863798/1‑93 (MQ=255)
tGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTgg > 1:3968294/1‑93 (MQ=255)
tGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTgg < 2:3558854/93‑1 (MQ=255)
gACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTggcg < 2:1495970/93‑1 (MQ=255)
gACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTggcg < 2:2760484/93‑1 (MQ=255)
ccAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTGGCGGccc > 1:2458998/1‑93 (MQ=255)
ccAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTGGCGGccc > 1:4105587/1‑93 (MQ=255)
aaCGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTGGCGGCCCGc < 2:3243441/93‑1 (MQ=255)
aCGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTGGCGGCCCGCt < 2:4090038/93‑1 (MQ=255)
cGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGGCTGACCGGAAGGCCACGATCTGAAACTGGCGGCCCGCtt > 2:1509612/1‑93 (MQ=255)
gCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTGGCGGCCCGCttt < 1:1435592/93‑1 (MQ=255)
ccaccaGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTGGCGGCCCGCTTTa > 2:2659147/1‑93 (MQ=255)
ccaccaGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTGGCGGCCCGCTTTa > 1:3728514/1‑93 (MQ=255)
accaGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTGGCGGCCCGCTTTacc < 2:705382/93‑1 (MQ=255)
accaGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTAAAACTGGCGGCCCGCTTTacc > 2:2847730/1‑93 (MQ=255)
ccaGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTGGCGGCCCGCTTTacca < 2:1190522/93‑1 (MQ=255)
aGCGTAGAAGATCAATTCCCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTGGCGGCCCGCTTTaccacc < 1:4398411/93‑1 (MQ=255)
aGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTGGCGGCCCGCTTTaccacc < 2:2494642/93‑1 (MQ=255)
aGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTGGCGGCCCGCTTTaccacc < 1:4528743/93‑1 (MQ=255)
tAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTGGCGGCCCGCTTTACCACCCGCa > 2:1489720/1‑93 (MQ=255)
tAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTGGCGGCCCGCTTTACCACCCGCa < 2:2978533/93‑1 (MQ=255)
tAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTGGCGGCCCGCTTTACCACCCGCa > 2:172664/1‑93 (MQ=255)
tAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTGGCGGCCCGCTTTACCACCCGCa < 2:1127761/93‑1 (MQ=255)
agaagaTCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTGGCGGCCCGCTTTACCACCCGCAc > 2:3388415/1‑93 (MQ=255)
gaagaTCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTGGCGGCCCGCTTTACCACCCGCACg > 2:3381467/1‑93 (MQ=255)
gaagaTCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTGGCGGCCCGCTTTACCACCCGCACg > 2:2519813/1‑93 (MQ=255)
gaagaTCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTGGCGGCCCGCTTTACCACCCGCACg > 1:1210479/1‑93 (MQ=255)
aagaTCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTGGCGGCCCGCATTACCACCCGCACGc > 1:1728/1‑93 (MQ=255)
agaTCAATTACCCGGCTTGGGCGCGAAAGTGCTGGCAGCCTGCCCGGAAGTCCACGATCTGAAACTGGCGGCCCGCTTTACCACCCGCACGcc > 1:4007561/1‑93 (MQ=255)
agaTCAATTACCCGGCGTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTGGCGGCCCGCTTTACCACCCGCACGcc < 1:362380/93‑1 (MQ=255)
aTCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTGGCGGCCCGCTTTACCACCCGCACGCCTg < 2:594933/93‑1 (MQ=255)
tCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTTGCGGCCCGCTTTACCAACCGCACGGCTGc > 2:2899009/1‑93 (MQ=255)
aaTTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTGGCGGCCCGCTTTACCACCCGCACGCCTGCCa > 2:3006077/1‑93 (MQ=255)
aTTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTGGCGGCCCGCTTTACCACCCGCACGCCTGCCaa > 1:135731/1‑93 (MQ=255)
ttACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTGGCGGCCCGCTTTACCACCCGCACGCCTGCCAAc > 2:2320805/1‑93 (MQ=255)
ccGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTGGCGGCCCGCTTTACCACCCGCACGCCTGCCAACTGga > 2:4077815/1‑93 (MQ=255)
ccGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTGGCGGCCCGCTTTACCACCCGCACGCCTGCCAACTGga > 1:4103900/1‑93 (MQ=255)
ccGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTGGCGGCCCGCTTTACCACCCGCACGCCTGCCAACTGga < 2:19779/93‑1 (MQ=255)
ccGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTGGCGGCCCGCTTTACCACCCGCACGCCTGCCAACTGga < 2:3113950/93‑1 (MQ=255)
cGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTGGCGGCCCGCTTTACCACCCGCACGCCTGCCAACTggca > 2:2693071/1‑91 (MQ=255)
cGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTGGCGGCCCGCTTTACCACCCGCACGCCTGCCAACTGgaa < 1:703475/93‑1 (MQ=255)
ggCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTGGCGGCCCGCTTTACCACCCGCACGCCTGCCAACTGgaag < 1:3437322/93‑1 (MQ=255)
|
CTGGTTCCGGTGCGTCTGGAAGAATATGCCGGATTCGTCTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCCTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTGGCGGCCCGCTTTACCACCCGCACGCCTGCCAACTGGAAG > NC_000913/1883109‑1883288
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CAACTGGTTCCGGTGCGTCTGGAAGAATATGCCGGATTCGTCTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCCTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTGGCGGCCCGCTTTACCACCCGCACGCCTGCCAACTGGAAGAACA > NC_000913/1883106‑1883292
|
CAACTGGTTCCGGTGCGTCTGGAAGAATATGCCGGATTCGTCTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTTCCCGGCT < SRR4302535.1628586/94‑1 (MQ=60)
CAACTGGTTCCGGTGCGTCTGGAAGAATATGCCGGATTCGTCTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCT > SRR4302535.2185508/1‑94 (MQ=60)
CAACTGGTTCCGGTGCGTCTGGAAGAATATGCCGGATTCGTCTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCT > SRR4302535.4198913/1‑94 (MQ=60)
CAACTGGTTCCGGTGCGTCTGGAAGAATATGCCGGATTCGTCTTCATCAACATGGACCCCAACGCAACCAGCGTAGAAGATCAATTACCCGGCT > SRR4302535.683789/1‑94 (MQ=60)
ACTGGTTCCGGTGCGTCTGGAAGAATATGCCGGATTCGTCTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTG > SRR4302535.3305338/1‑94 (MQ=60)
ACTGGTTCCGGTGCGTCTGGAAGAATATGCCGGATTCGTCTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTG > SRR4302535.1924774/1‑94 (MQ=60)
CTGGTTCCGGTGCGTCTGGAAGAATATGCCGGATTCGTCTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGG > SRR4302535.2467142/1‑94 (MQ=60)
GGTTCCGGTGCGTCTGGAAGAATATGCCGGATTCGTCTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGC < SRR4302535.467479/94‑1 (MQ=60)
GTTCCGGTGCGTCTGGAAGAATATGCCGGATTCGTCTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCG < SRR4302535.3630553/94‑1 (MQ=60)
TCCGGTGCGTCTGGAAGAATATGCCGGATTCGTCTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCG > SRR4302535.3264265/1‑94 (MQ=60)
GGTGCGTCTGGAAGAATATGCCGGATTCGTCTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAA < SRR4302535.3678081/94‑1 (MQ=60)
GGTGCGTCTGGAAGAATATGCCGGATTCGTCTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAA > SRR4302535.3419144/1‑94 (MQ=60)
TGCGTCTGGAAGAATATGCCGGATTCGTCTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGT < SRR4302535.606663/94‑1 (MQ=60)
GCGTCTGGAAGAATATGCCGGATTCGTCTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTG < SRR4302535.1367806/94‑1 (MQ=60)
GTCTGGAAGAATATGCCGGATTCGTCTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCT > SRR4302535.4640137/1‑94 (MQ=60)
CTGGAAGAATATGCCGGATTCGTCTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGG > SRR4302535.697098/1‑94 (MQ=60)
GAAGAATATGCCGGATTCGTCTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAG < SRR4302535.2158767/94‑1 (MQ=60)
AATATGCCGGATTCGTCTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTG < SRR4302535.3614253/94‑1 (MQ=60)
AATATGCCGGATTCGTCTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTG > SRR4302535.3707010/1‑94 (MQ=60)
AATATGCCGGATTCGTCTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTG > SRR4302535.1702923/1‑94 (MQ=60)
TATGCCGGATTCGTCTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCC < SRR4302535.332382/94‑1 (MQ=60)
TATGCCGGATTCGTCTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCC < SRR4302535.772180/94‑1 (MQ=60)
GCCGGATTCGTCTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGG > SRR4302535.2873253/1‑94 (MQ=60)
CGGATTCGTCTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAA < SRR4302535.2136281/94‑1 (MQ=60)
ATTCGTCTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGTCTGCCCGGCAGTC > SRR4302535.2023574/1‑94 (MQ=60)
TTCGTCTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCC < SRR4302535.1983419/94‑1 (MQ=60)
CTCTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACG < SRR4302535.2937381/94‑1 (MQ=60)
CTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGAT < SRR4302535.2181195/94‑1 (MQ=60)
TCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCT < SRR4302535.1558783/94‑1 (MQ=60)
CATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTG > SRR4302535.4277423/1‑94 (MQ=60)
ATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGA > SRR4302535.4424395/1‑94 (MQ=60)
ATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGA > SRR4302535.976955/1‑94 (MQ=60)
ACAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAA < SRR4302535.890144/94‑1 (MQ=60)
CAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAA > SRR4302535.85421/1‑94 (MQ=60)
CAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAA > SRR4302535.626023/1‑94 (MQ=60)
AACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAAC < SRR4302535.612409/94‑1 (MQ=60)
CATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTG > SRR4302535.3890379/1‑94 (MQ=60)
CATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTG > SRR4302535.2601313/1‑94 (MQ=60)
ATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTGG > SRR4302535.3995397/1‑94 (MQ=60)
CCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTGGCGGCCC > SRR4302535.4133698/1‑94 (MQ=60)
CCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTGGCGGCCC > SRR4302535.2476731/1‑94 (MQ=60)
GCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTGGCGGCCCGCTTTA < SRR4302535.1445849/94‑1 (MQ=60)
GCCACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTGGCGGCCCGCTTTA > SRR4302535.3754339/1‑94 (MQ=60)
ACCAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTGGCGGCCCGCTTTACCA > SRR4302535.471094/1‑94 (MQ=60)
CAGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTGGCGGCCCGCTTTACCACC < SRR4302535.4272793/94‑1 (MQ=60)
AGCGTAGAAGATCAATTCCCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTGGCGGCCCGCTTTACCACCC < SRR4302535.4428516/94‑1 (MQ=60)
AGCGTAGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTGGCGGCCCGCTTTACCACCC < SRR4302535.4559754/94‑1 (MQ=60)
AGAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTGGCGGCCCGCTTTACCACCCGCACG > SRR4302535.1219174/1‑94 (MQ=60)
GAAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTGGCGGCCCGCATTACCACCCGCACGC > SRR4302535.1747/1‑94 (MQ=60)
AAGATCAATTACCCGGCTTGGGCGCGAAAGTGCTGGCAGCCTGCCCGGAAGTCCACGATCTGAAACTGGCGGCCCGCTTTACCACCCGCACGCC > SRR4302535.4034979/1‑94 (MQ=60)
AGATCAATTACCCGGCGTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTGGCGGCCCGCTTTACCACCCGCACGCCT < SRR4302535.364880/94‑1 (MQ=60)
CAATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTGGCGGCCCGCTTTACCACCCGCACGCCTGCCA > SRR4302535.1889068/1‑94 (MQ=60)
AATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTGGCGGCCCGCTTTACCACCCGCACGCCTGCCAA > SRR4302535.2222549/1‑94 (MQ=60)
AATTACCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTGGCGGCCCGCTTTACCACCCGCACGCCTGCCAA > SRR4302535.136678/1‑94 (MQ=60)
CCCGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTGGCGGCCCGCTTTACCACCCGCACGCCTGCCAACTGGA > SRR4302535.4131995/1‑94 (MQ=60)
CGGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTGGCGGCCCGCTTTACCACCCGCACGCCTGCCAACTGGAAG < SRR4302535.708409/94‑1 (MQ=60)
GGCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTGGCGGCCCGCTTTACCACCCGCACGCCTGCCAACTGGAAGA < SRR4302535.3461232/94‑1 (MQ=60)
GCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCGACGCACTGAAACTGGCGGCCCGCTTTACCACCCGCACGCCTGCCAACTGGAAGAA > SRR4302535.3317745/1‑94 (MQ=60)
GCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTGGCGGCCCGCTTTACCACCCGCACGCCTGCCAACTGGAAGAA > SRR4302535.2242911/1‑94 (MQ=60)
GCTTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTGGCGGCCCGCTTTACCACCCGCACGCCTGCCAACTGGAAGAA < SRR4302535.399693/94‑1 (MQ=60)
GCGTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTGGCGGCCCGCTTTACCACCCGCACGCCTGCCAACTGGAAGAA < SRR4302535.148469/94‑1 (MQ=60)
TTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTGGCGGCCCGCTTTACCACCCGCACGCCTGCCAACTGGAAGAACA < SRR4302535.3164249/94‑1 (MQ=60)
TTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTGGCGGCCCGCTTTACCACCCGCACGCCTGCCAACTGGAAGAACA < SRR4302535.732284/94‑1 (MQ=60)
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CAACTGGTTCCGGTGCGTCTGGAAGAATATGCCGGATTCGTCTTCATCAACATGGACCCCAACGCCACCAGCGTAGAAGATCAATTACCCGGCCTGGGCGCGAAAGTGCTGGAAGCCTGCCCGGAAGTCCACGATCTGAAACTGGCGGCCCGCTTTACCACCCGCACGCCTGCCAACTGGAAGAACA > NC_000913/1883106‑1883292
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
