Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,964,115 |
G→A |
S34L (TCA→TTA) |
flhB ← |
FlhB |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,964,115 | 0 | G | A | 100.0%
| 387.3
/ NA
| 107 | S34L (TCA→TTA) | flhB | FlhB |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (49/58); total (49/58) |
Only 100 of 111 total aligned reads displayed.
AGCCCAGCGGAGAGCATGCCCGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTGAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTGGGGGCTTCTGTTTTGTCGTCGCTC > NC_000913/1964025‑1964204
|
aGCCCAGCGGAGAGCATGCCCGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAg < 2:1806593/93‑1 (MQ=255)
aGCCCAGCGGAGAGCATGCCCGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAg < 1:2627336/93‑1 (MQ=255)
aGCCCAGCGGAGAGCATGCCCGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAg > 1:764853/1‑93 (MQ=255)
aGCCCAGCGGAGAGCATGCCCGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAg > 2:3324043/1‑93 (MQ=255)
ccAGCGGAGAGCATGCCCGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTc < 1:707559/93‑1 (MQ=255)
ccAGCGGAGAGCATGCCCGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTc > 2:313330/1‑93 (MQ=255)
ccAGCGGAGAGCATGCCCGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTc > 1:1785435/1‑93 (MQ=255)
ccAGCGGAGAGCATGCCCGAAAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTc < 2:555030/93‑1 (MQ=255)
cAGCGGAGAGCATGCCCGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCa < 1:3920432/93‑1 (MQ=255)
aGCGGAGAGCATGCCCGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGCCAg > 1:3256634/1‑93 (MQ=255)
cGGAGACCATCCCCGACAAGCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGGAAAATCAGCAGTAAGGTCAGtt < 2:1411409/93‑1 (MQ=255)
ggAGAGCATGCCCGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTc > 1:3980688/1‑93 (MQ=255)
gagaGCATGCCCGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCa < 1:4169405/93‑1 (MQ=255)
gagaGCATGCCCGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCa > 2:3961340/1‑93 (MQ=255)
gagaGCATGCCCGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGGCAGTTCa > 2:3046354/1‑93 (MQ=255)
agagCATGCCCGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCAc > 2:515190/1‑93 (MQ=255)
gagCATGCCCGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACg > 2:11854/1‑93 (MQ=255)
gagCATGCCCGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACg > 2:3212029/1‑93 (MQ=255)
agCATGCCCGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACgg < 2:3827060/93‑1 (MQ=255)
cATGCCCGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGa < 1:2021555/93‑1 (MQ=255)
ctGCCCGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGaa < 2:3129601/92‑1 (MQ=255)
tGCCCGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAAc > 1:2230133/1‑93 (MQ=255)
tGCCCGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAAc < 2:2600075/93‑1 (MQ=255)
tGCCCGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAAc > 2:762823/1‑93 (MQ=255)
gCCCGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAAcg > 1:4244879/1‑93 (MQ=255)
cccGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAAcgc < 1:608940/93‑1 (MQ=255)
cccGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAAcgc < 2:3511976/93‑1 (MQ=255)
cccGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGCCAGTTCACGGGAAcgc > 1:3011694/1‑93 (MQ=255)
ccGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAAcgcg < 2:326523/93‑1 (MQ=255)
cGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCgg > 2:2209004/1‑93 (MQ=255)
cGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCgg < 1:1595667/93‑1 (MQ=255)
gACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCggg < 2:859148/93‑1 (MQ=255)
aCAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGa < 2:1764893/93‑1 (MQ=255)
aCAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGa > 1:4248511/1‑93 (MQ=255)
aTCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGAttt > 2:1945500/1‑93 (MQ=255)
aTCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGAttt > 1:3218862/1‑93 (MQ=255)
aTCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGAttt < 2:2964746/93‑1 (MQ=255)
aTCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGAttt < 2:1029709/93‑1 (MQ=255)
tCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTg > 2:779500/1‑93 (MQ=255)
tCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTg > 2:2490695/1‑93 (MQ=255)
cGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGc < 1:4484288/93‑1 (MQ=255)
aCGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGccc < 2:184933/93‑1 (MQ=255)
cGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGcccc < 2:604843/93‑1 (MQ=255)
gCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTccc < 2:4405739/93‑1 (MQ=255)
acacacCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCcgcg > 1:2728419/1‑93 (MQ=255)
cacacCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCgcgc < 2:112199/93‑1 (MQ=255)
acacCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCt < 2:4586477/93‑1 (MQ=255)
acCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCttt > 1:1831398/1‑93 (MQ=255)
cGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCttttt < 1:2404360/93‑1 (MQ=255)
gCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTc < 1:3857785/93‑1 (MQ=255)
ccAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCt < 2:4153426/93‑1 (MQ=255)
cAAGCCAGATAACACTAGCGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTa < 1:4370738/93‑1 (MQ=255)
cAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTa > 2:329717/1‑93 (MQ=255)
cAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTa > 1:1141250/1‑93 (MQ=255)
aaCCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGt < 1:39468/93‑1 (MQ=255)
aaCCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGt < 1:3040078/93‑1 (MQ=255)
aaCCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGt > 1:4665701/1‑93 (MQ=255)
aaCCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGt < 1:3717714/93‑1 (MQ=255)
aCCAGATAACACTACCGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCCCGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTc < 1:249153/93‑1 (MQ=255)
aCCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTc > 2:3395289/1‑93 (MQ=255)
aCCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTc < 1:1086230/93‑1 (MQ=255)
aGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGt < 2:4613413/93‑1 (MQ=255)
aGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGt < 2:2869197/93‑1 (MQ=255)
gATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTg < 1:4645828/93‑1 (MQ=255)
aTAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGa < 1:3212029/93‑1 (MQ=255)
aTAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGa < 2:4028267/93‑1 (MQ=255)
aTAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGa < 1:629145/93‑1 (MQ=255)
tAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAg > 1:1284434/1‑93 (MQ=255)
aaCACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTCTCTAGTCGGTGAgg > 1:2346442/1‑93 (MQ=255)
acacTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGCACGCGGGATTTGCCCCTCTTCCTGCGCTTTTTCTAGTCGGTGAGgt < 2:3780906/93‑1 (MQ=255)
acacTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGgt > 2:1161115/1‑93 (MQ=255)
acacTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGgt < 1:3896382/93‑1 (MQ=255)
cccTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCTCGCTTTTTCTAGTCGGTGAGgtg < 1:2144422/91‑1 (MQ=255)
cTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGtgtg > 1:1736646/1‑93 (MQ=255)
tAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTgg > 2:1615842/1‑93 (MQ=255)
aCGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTgggg < 1:2213860/93‑1 (MQ=255)
aCGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTgggg < 1:230323/93‑1 (MQ=255)
ccaccaGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTGGGGGCtt > 2:395244/1‑93 (MQ=255)
ccaccaGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTGGGGGCtt > 1:2056617/1‑93 (MQ=255)
caccaGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTGGGGGCTTc > 1:709873/1‑93 (MQ=255)
caccaGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGGCGGTGAGGTGTGGGGGCTTc < 2:4438411/93‑1 (MQ=255)
ccaGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTGGGGGCTTCTg < 1:1782334/93‑1 (MQ=255)
ccaGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTGGGGGCTTCTg > 2:1458318/1‑93 (MQ=255)
ccaGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTGGGGGCTTCTg < 2:2137912/93‑1 (MQ=255)
caGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTGGGGGCTTCTGt < 1:104136/93‑1 (MQ=255)
caGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTGGGGGCTTCTGt < 2:2164704/93‑1 (MQ=255)
aGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCCTTTTCTAGTCGGTGAGGTGTGGGGGCTTCTGtt > 2:433749/1‑93 (MQ=255)
gCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTGGGGGCTTCTGttt > 2:1439031/1‑93 (MQ=255)
gCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTGGGGGCTTCTGttt > 1:1629521/1‑93 (MQ=255)
aaTCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTGGGGGCTTCTGTTTTgtc > 1:890478/1‑93 (MQ=255)
aaTCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTGGGGGCTTCTGTTTTgtc > 2:698184/1‑93 (MQ=255)
aTCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTGGGGGCTTCTGTTTTgtcg > 2:1024204/1‑93 (MQ=255)
tCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTGGGGGCTTCTGTTTTgtcgt > 1:3838815/1‑93 (MQ=255)
tCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTGGGGGCTTCTGTTTTgtcgt < 2:2773966/93‑1 (MQ=255)
tCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTGGGGGCTTCTGTTTTgtcgt < 1:3206989/93‑1 (MQ=255)
cagcagTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTGGGGGCTTCTGTTTTgtcgtc < 1:781586/93‑1 (MQ=255)
agcagTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTGGGGGCTTCTGTTTTGtcgtcg > 1:2111489/1‑93 (MQ=255)
gcagTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTGGGGGCTTCTGTTTTGTCGTCGc > 2:1289158/1‑93 (MQ=255)
agTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTGGGGGCTTCTGTTTTGTCGTCGctc > 2:2646900/1‑93 (MQ=255)
agTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTGGGGGCTTCTGTTTTGTCGTCGctc < 1:3665122/93‑1 (MQ=255)
|
AGCCCAGCGGAGAGCATGCCCGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTGAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTGGGGGCTTCTGTTTTGTCGTCGCTC > NC_000913/1964025‑1964204
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CAGCCCAGCGGAGAGCATGCCCGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTGAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTGGGGGCTTCTGTTTTGTCGTCGCTCTCGT > NC_000913/1964024‑1964208
|
CAGCCCAGCGGAGAGCATGCCCGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAG > SRR4302535.770241/1‑94 (MQ=60)
AGCCCAGCGGAGAGCATGCCCGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGG < SRR4302535.2646166/94‑1 (MQ=60)
CCCAGCGGAGAGCATGCCCGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTC > SRR4302535.714648/1‑94 (MQ=60)
CCCAGCGGAGAGCATGCCCGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTC > SRR4302535.2442169/1‑94 (MQ=60)
CCCAGCGGAGAGCATGCCCGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTC > SRR4302535.1798356/1‑94 (MQ=60)
CCAGCGGAGAGCATGCCCGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCA < SRR4302535.712524/94‑1 (MQ=60)
CAGCGGAGAGCATGCCCGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAG < SRR4302535.3947239/94‑1 (MQ=60)
CAGCGGAGAGCATGCCCGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGCCAG > SRR4302535.3279262/1‑94 (MQ=60)
CGGAGAGCATGCCCGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTC > SRR4302535.4007882/1‑94 (MQ=60)
GAGAGCATGCCCGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCAC < SRR4302535.4197956/94‑1 (MQ=60)
CATGCCCGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAA < SRR4302535.2036129/94‑1 (MQ=60)
ATGCCCGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAAC > SRR4302535.2245991/1‑94 (MQ=60)
TGCCCGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACG > SRR4302535.4273937/1‑94 (MQ=60)
GCCCGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGCCAGTTCACGGGAACGC > SRR4302535.3032797/1‑94 (MQ=60)
CCCGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCG < SRR4302535.613187/94‑1 (MQ=60)
CGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGG < SRR4302535.1607174/94‑1 (MQ=60)
GACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGA > SRR4302535.4277609/1‑94 (MQ=60)
AATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTT > SRR4302535.3241162/1‑94 (MQ=60)
CGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCC < SRR4302535.4515073/94‑1 (MQ=60)
GACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCG > SRR4302535.2747902/1‑94 (MQ=60)
GACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCG < SRR4302535.4227174/94‑1 (MQ=60)
CACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTT > SRR4302535.1844614/1‑94 (MQ=60)
CGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTC < SRR4302535.2421660/94‑1 (MQ=60)
GCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCT < SRR4302535.3558504/94‑1 (MQ=60)
GCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCT < SRR4302535.3884342/94‑1 (MQ=60)
CCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTA > SRR4302535.1149383/1‑94 (MQ=60)
CAAGCCAGATAACACTAGCGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAG < SRR4302535.4400647/94‑1 (MQ=60)
AAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGT > SRR4302535.4697241/1‑94 (MQ=60)
AACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTC < SRR4302535.3061370/94‑1 (MQ=60)
AACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTC < SRR4302535.39770/94‑1 (MQ=60)
AACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTC < SRR4302535.3743475/94‑1 (MQ=60)
ACCAGATAACACTACCGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCCCGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCG < SRR4302535.250868/94‑1 (MQ=60)
ACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCG < SRR4302535.1093952/94‑1 (MQ=60)
GATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGA < SRR4302535.4677308/94‑1 (MQ=60)
ATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAG < SRR4302535.633532/94‑1 (MQ=60)
ATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAG < SRR4302535.3234274/94‑1 (MQ=60)
ATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAG > SRR4302535.1293588/1‑94 (MQ=60)
TAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTCTCTAGTCGGTGAGG > SRR4302535.2363259/1‑94 (MQ=60)
ACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTG < SRR4302535.3923084/94‑1 (MQ=60)
CCCTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCTCGCTTTTTCTAGTCGGTGAGGTGT < SRR4302535.2159849/94‑1 (MQ=60)
ACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTG > SRR4302535.1749199/1‑94 (MQ=60)
TAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTGGG < SRR4302535.1976685/94‑1 (MQ=60)
ACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTGGGGG < SRR4302535.231911/94‑1 (MQ=60)
ACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTGGGGG < SRR4302535.2229624/94‑1 (MQ=60)
CCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTGGGGGCTT > SRR4302535.2071436/1‑94 (MQ=60)
CCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTGGGGGCTTC > SRR4302535.714856/1‑94 (MQ=60)
CCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTGGGGGCTTCTGT < SRR4302535.1795233/94‑1 (MQ=60)
CAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTGGGGGCTTCTGTT < SRR4302535.104877/94‑1 (MQ=60)
AGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTGGGGGCTTCTGTTT > SRR4302535.1641290/1‑94 (MQ=60)
AAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTGGGGGCTTCTGTTTTGTC > SRR4302535.896789/1‑94 (MQ=60)
ATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTGGGGGCTTCTGTTTTGTCGT > SRR4302535.3865276/1‑94 (MQ=60)
TCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTGGGGGCTTCTGTTTTGTCGTC < SRR4302535.3229202/94‑1 (MQ=60)
CAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTGGGGGCTTCTGTTTTGTCGTCG > SRR4302535.2126731/1‑94 (MQ=60)
CAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTGGGGGCTTCTGTTTTGTCGTCG < SRR4302535.787072/94‑1 (MQ=60)
AGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTGGGGGCTTCTGTTTTGTCGTCGCTCT < SRR4302535.3690501/94‑1 (MQ=60)
AAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTGGGGGCTTCTGTTTTGTCGTCGCTCTCGT < SRR4302535.969203/94‑1 (MQ=60)
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CAGCCCAGCGGAGAGCATGCCCGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTGAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTGGGGGCTTCTGTTTTGTCGTCGCTCTCGT > NC_000913/1964024‑1964208
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
