Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1873 183.1 9376148 98.2% 9207377 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,225,197 T→C T32A (ACC→GCC)  yohF ← putative oxidoreductase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,225,1970TC99.2% 410.5 / NA 130T32A (ACC→GCC) yohFputative oxidoreductase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base C (63/66);  minor base G (1/0);  total (64/66)
Fisher's exact test for biased strand distribution p-value = 4.92e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 133 total aligned reads displayed.

CGAGATCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGTAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAATAATCGCAACCTGTG  >  NC_000913/2225107‑2225286
                                                                                          |                                                                                         
cGAGATCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCaa                                                                                         >  1:761916/1‑93 (MQ=255)
cGAGATCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCaa                                                                                         <  1:1346895/93‑1 (MQ=255)
 gagaTCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAAt                                                                                        >  1:3722383/1‑93 (MQ=255)
  agaTCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATa                                                                                       <  1:3380680/93‑1 (MQ=255)
     tCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCa                                                                                    >  2:2742881/1‑93 (MQ=255)
       cAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAat                                                                                  <  2:138340/93‑1 (MQ=255)
        cgCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAata                                                                                 <  2:4216314/92‑1 (MQ=255)
        aGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAata                                                                                 <  1:3739709/93‑1 (MQ=255)
          cTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATc                                                                               <  1:3148841/93‑1 (MQ=255)
          cTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATc                                                                               <  1:2031775/93‑1 (MQ=255)
            gCACGATCTCCGCACGTACGCCGTGGCTAGCTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCaa                                                                             <  1:2338364/93‑1 (MQ=255)
            gCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCaa                                                                             <  1:3982895/93‑1 (MQ=255)
            gCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCaa                                                                             <  2:3276380/93‑1 (MQ=255)
             cACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCaaa                                                                            <  2:1536453/93‑1 (MQ=255)
              aCGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAAc                                                                           <  1:289681/93‑1 (MQ=255)
              aCGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAAc                                                                           <  2:2247748/93‑1 (MQ=255)
              aCGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAAc                                                                           >  1:3473710/1‑93 (MQ=255)
              aCGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAAc                                                                           >  1:2085359/1‑93 (MQ=255)
               cGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAAcc                                                                          >  2:3425219/1‑93 (MQ=255)
               cGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAAcc                                                                          <  2:1332905/93‑1 (MQ=255)
                gATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAAccc                                                                         >  1:3932136/1‑93 (MQ=255)
                  tctcCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCct                                                                       <  1:3314826/93‑1 (MQ=255)
                  tctcCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCct                                                                       >  1:639859/1‑93 (MQ=255)
                  tctaCGCGCGTACGGCGTGGCTAACTCCCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCct                                                                       <  1:178308/93‑1 (MQ=255)
                    tcCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCctgc                                                                     <  1:238691/93‑1 (MQ=255)
                    tcCGCACGTACGCCGTGACTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCctgc                                                                     <  2:556925/93‑1 (MQ=255)
                       gCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCtgctgc                                                                  <  1:491570/93‑1 (MQ=255)
                       gCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCtgctgc                                                                  >  2:1812265/1‑93 (MQ=255)
                        cACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTgcg                                                                 >  1:3178033/1‑93 (MQ=255)
                         aCGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTgcgc                                                                >  2:3050429/1‑93 (MQ=255)
                         aCGTACGCCGTGGATCACTACCTCACGCGCGGCATCTTTTTCCCCTTCTTCATCTGAGTGCCAGGCAATACCAACATCAAACCCCTACTccgc                                                                >  2:3468163/1‑93 (MQ=255)
                           gTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCa                                                              >  2:3030636/1‑93 (MQ=255)
                           gTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCa                                                              >  1:4079257/1‑93 (MQ=255)
                           gTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAAACCCTGCTGCGCCa                                                              >  2:429939/1‑93 (MQ=255)
                               gCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGtaa                                                          <  1:2476883/93‑1 (MQ=255)
                               gCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGtaa                                                          <  1:3478939/93‑1 (MQ=255)
                                 cGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGtaata                                                        <  2:4129096/93‑1 (MQ=255)
                                  gTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGtaataa                                                       <  2:3444614/93‑1 (MQ=255)
                                  gTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGtaataa                                                       >  2:1382157/1‑93 (MQ=255)
                                   tGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAAc                                                      >  1:465674/1‑93 (MQ=255)
                                   tGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAAc                                                      >  1:1060656/1‑93 (MQ=255)
                                   tGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAAc                                                      <  1:1569521/93‑1 (MQ=255)
                                      cTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAAcgcg                                                   >  1:1652283/1‑93 (MQ=255)
                                       tAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACgcgc                                                  >  2:381434/1‑93 (MQ=255)
                                       tAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACgcgc                                                  >  1:4237187/1‑93 (MQ=255)
                                        aaCTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCa                                                 <  1:2087732/93‑1 (MQ=255)
                                        aaCTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCa                                                 <  2:2960559/93‑1 (MQ=255)
                                        aaCTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACACCTGCTGCGCCAGTCATAACGCGCa                                                 >  2:2583514/1‑93 (MQ=255)
                                           tACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCActc                                              <  2:4496686/93‑1 (MQ=255)
                                           tACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCActc                                              >  2:930499/1‑93 (MQ=255)
                                           tACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCActc                                              >  1:1817924/1‑93 (MQ=255)
                                           tACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCActc                                              >  1:4474341/1‑93 (MQ=255)
                                             ccTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCtt                                            <  2:1267208/93‑1 (MQ=255)
                                              cTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCttt                                           <  2:720599/93‑1 (MQ=255)
                                              cTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCttt                                           <  1:3921397/93‑1 (MQ=255)
                                                cACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGc                                         <  1:560351/93‑1 (MQ=255)
                                                cACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGc                                         <  1:4255095/93‑1 (MQ=255)
                                                 aCGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGcc                                        <  1:4034870/93‑1 (MQ=255)
                                                     gcgGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATc                                    >  1:610641/1‑93 (MQ=255)
                                                     gcgGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATc                                    >  2:2132185/1‑93 (MQ=255)
                                                       ggTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGGAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATccc                                  >  2:1275862/1‑93 (MQ=255)
                                                        gTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATcccc                                 <  1:918086/93‑1 (MQ=255)
                                                        gTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATcccc                                 >  1:3441661/1‑93 (MQ=255)
                                                          aTCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGa                               >  2:254512/1‑93 (MQ=255)
                                                          aTCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGa                               >  2:2615652/1‑93 (MQ=255)
                                                          aTCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGa                               >  2:3798670/1‑93 (MQ=255)
                                                           tCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGac                              >  2:3285969/1‑92 (MQ=255)
                                                           tCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGaa                              <  1:2223876/93‑1 (MQ=255)
                                                           tCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGaa                              <  1:4293039/93‑1 (MQ=255)
                                                            cTTTTGCCTTTTCTTCATCTGAGTGCCAGACATTCCCAATAATAAACCCCAGCTGCGCCAGGATTAACGCGCGCTCTTCGCCGATCACCGAAt                             <  2:509518/93‑1 (MQ=255)
                                                             ttttGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATc                            <  1:2998417/93‑1 (MQ=255)
                                                             ttttGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATc                            >  1:3478388/1‑93 (MQ=255)
                                                                tGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGa                         <  1:3822636/93‑1 (MQ=255)
                                                                tGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGa                         <  2:2968670/93‑1 (MQ=255)
                                                                 gCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAg                        >  1:1726344/1‑93 (MQ=255)
                                                                 gCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAg                        <  1:1357102/93‑1 (MQ=255)
                                                                  ccccTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAgg                       >  2:1610901/1‑93 (MQ=255)
                                                                   cccTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAAGc                      >  1:1858123/1‑93 (MQ=255)
                                                                    ccTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCg                     >  2:58906/1‑93 (MQ=255)
                                                                      ttcttcATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCgga                   >  1:1122538/1‑92 (MQ=255)
                                                                      ttcttcATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGt                   <  1:1026505/93‑1 (MQ=255)
                                                                       tcttcATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGta                  <  1:2193025/93‑1 (MQ=255)
                                                                        cttcATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGtaa                 <  1:3648135/93‑1 (MQ=255)
                                                                        cttcATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCAAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGtaa                 <  2:4080357/93‑1 (MQ=255)
                                                                         ttcATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGtaat                >  2:1520392/1‑93 (MQ=255)
                                                                         ttcATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGtaat                >  1:3220514/1‑93 (MQ=255)
                                                                           cATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGtaataa              >  1:1404898/1‑93 (MQ=255)
                                                                            aTCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTaataat             <  2:4665653/93‑1 (MQ=255)
                                                                             tCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAATAATc            <  2:2731357/93‑1 (MQ=255)
                                                                               tGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAATAATCGc          >  1:1012836/1‑93 (MQ=255)
                                                                                gAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAATAATCGCa         >  2:1212308/1‑93 (MQ=255)
                                                                                gAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAATAATCGCa         >  2:2586677/1‑93 (MQ=255)
                                                                                  gTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAATAATCGCAAc       <  2:43924/93‑1 (MQ=255)
                                                                                  gTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAAAGCGCACTCTTTGTCGATCACCGAATCGGAGGCGGTAATAATAGCAAc       >  2:499995/1‑93 (MQ=255)
                                                                                    gCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAATAATCGCAACCt     >  1:912679/1‑93 (MQ=255)
                                                                                     ccAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAATAATCGCAACCtg    <  1:2778614/93‑1 (MQ=255)
                                                                                      cAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAATAATCGCAACCtgt   >  1:2741353/1‑93 (MQ=255)
                                                                                      cAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAATAATCGCAACCtgt   <  1:2762158/93‑1 (MQ=255)
                                                                                      cAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAATAATCGCAACCtgt   >  1:3051935/1‑93 (MQ=255)
                                                                                       aGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAATAATCGCAACCtgtg  >  1:2200566/1‑93 (MQ=255)
                                                                                          |                                                                                         
CGAGATCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGTAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAATAATCGCAACCTGTG  >  NC_000913/2225107‑2225286

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TGCCGAGATCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGTAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAATAATCGCAACCTGTGCCAT  >  NC_000913/2225104‑2225290
                                                                                             |                                                                                             
TGCCGAGATCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGC                                                                                               <  SRR4302535.3196131/94‑1 (MQ=60)
 GCCGAGATCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCA                                                                                              <  SRR4302535.3382187/94‑1 (MQ=60)
  CCGAGATCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAA                                                                                             >  SRR4302535.767286/1‑94 (MQ=60)
   CGAGATCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAAT                                                                                            >  SRR4302535.3748170/1‑94 (MQ=60)
   CGAGATCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAAT                                                                                            <  SRR4302535.1356511/94‑1 (MQ=60)
     AGATCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATAC                                                                                          <  SRR4302535.3404183/94‑1 (MQ=60)
           AGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATAT                                                                                    <  SRR4302535.3765590/94‑1 (MQ=60)
             CTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCA                                                                                  <  SRR4302535.3170732/94‑1 (MQ=60)
             CTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCA                                                                                  <  SRR4302535.2046415/94‑1 (MQ=60)
               GCACGATCTCCGCACGTACGCCGTGGCTAGCTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAA                                                                                <  SRR4302535.2355097/94‑1 (MQ=60)
               GCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAA                                                                                <  SRR4302535.4010109/94‑1 (MQ=60)
                CACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAAC                                                                               >  SRR4302535.3497846/1‑94 (MQ=60)
                CACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAAC                                                                               >  SRR4302535.2100377/1‑94 (MQ=60)
                CACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAAC                                                                               <  SRR4302535.1748765/94‑1 (MQ=60)
                 ACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACC                                                                              <  SRR4302535.1888068/94‑1 (MQ=60)
                 ACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACC                                                                              <  SRR4302535.291709/94‑1 (MQ=60)
                  CGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCC                                                                             <  SRR4302535.3588243/94‑1 (MQ=60)
                  CGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCC                                                                             >  SRR4302535.3958977/1‑94 (MQ=60)
                  CGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCC                                                                             >  SRR4302535.3958978/1‑94 (MQ=60)
                    ATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCT                                                                           >  SRR4302535.644330/1‑94 (MQ=60)
                    ATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCT                                                                           <  SRR4302535.3805587/94‑1 (MQ=60)
                     TCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTG                                                                          <  SRR4302535.3337888/94‑1 (MQ=60)
                     TCTACGCGCGTACGGCGTGGCTAACTCCCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTG                                                                          <  SRR4302535.179547/94‑1 (MQ=60)
                       TCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCT                                                                        <  SRR4302535.240330/94‑1 (MQ=60)
                          GCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCG                                                                     >  SRR4302535.3200014/1‑94 (MQ=60)
                          GCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCG                                                                     <  SRR4302535.495017/94‑1 (MQ=60)
                             CGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCA                                                                  >  SRR4302535.4107163/1‑94 (MQ=60)
                                  GCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAAT                                                             <  SRR4302535.2494747/94‑1 (MQ=60)
                                  GCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAAT                                                             <  SRR4302535.3503111/94‑1 (MQ=60)
                                     GTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAAC                                                          <  SRR4302535.1239003/94‑1 (MQ=60)
                                     GTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAAC                                                          >  SRR4302535.468931/1‑94 (MQ=60)
                                     GTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAAC                                                          >  SRR4302535.1068205/1‑94 (MQ=60)
                                      TGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACC                                                         <  SRR4302535.1580849/94‑1 (MQ=60)
                                        GCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCG                                                       >  SRR4302535.1664233/1‑94 (MQ=60)
                                         CTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGC                                                      >  SRR4302535.4266183/1‑94 (MQ=60)
                                         CTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGC                                                      >  SRR4302535.3490418/1‑94 (MQ=60)
                                           AACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCAC                                                    <  SRR4302535.2102768/94‑1 (MQ=60)
                                             CTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTC                                                  >  SRR4302535.4505042/1‑94 (MQ=60)
                                             CTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTC                                                  >  SRR4302535.1831061/1‑94 (MQ=60)
                                                 CTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTG                                              <  SRR4302535.3948207/94‑1 (MQ=60)
                                                   CACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCC                                            <  SRR4302535.4284246/94‑1 (MQ=60)
                                                   CACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCC                                            <  SRR4302535.564270/94‑1 (MQ=60)
                                                    ACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCG                                           <  SRR4302535.4062493/94‑1 (MQ=60)
                                                       CGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATC                                        >  SRR4302535.614894/1‑94 (MQ=60)
                                                         CGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCC                                      >  SRR4302535.2888240/1‑94 (MQ=60)
                                                          GGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCC                                     <  SRR4302535.1547597/94‑1 (MQ=60)
                                                          GGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCC                                     >  SRR4302535.3465595/1‑94 (MQ=60)
                                                           GTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCG                                    <  SRR4302535.924597/94‑1 (MQ=60)
                                                              TCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAAT                                 <  SRR4302535.4322416/94‑1 (MQ=60)
                                                              TCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAAT                                 <  SRR4302535.2239704/94‑1 (MQ=60)
                                                               CTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATC                                >  SRR4302535.3502558/1‑94 (MQ=60)
                                                               CTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATC                                >  SRR4302535.2344237/1‑94 (MQ=60)
                                                                TTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCG                               <  SRR4302535.3019442/94‑1 (MQ=60)
                                                                   TGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAG                            >  SRR4302535.1738825/1‑94 (MQ=60)
                                                                   TGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAG                            <  SRR4302535.3849004/94‑1 (MQ=60)
                                                                   TGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAG                            <  SRR4302535.71189/94‑1 (MQ=60)
                                                                    GCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGG                           <  SRR4302535.1366810/94‑1 (MQ=60)
                                                                     CCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAAGC                          >  SRR4302535.1871522/1‑94 (MQ=60)
                                                                      CCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCG                         >  SRR4302535.2186110/1‑94 (MQ=60)
                                                                      CCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCG                         >  SRR4302535.4420086/1‑94 (MQ=60)
                                                                      CCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCAGCTGCGCCAGTAATAACGCGCACTCTTTGCCGCTCCCCGAATCGGAGGCG                         >  SRR4302535.3326365/1‑94 (MQ=60)
                                                                       CCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGG                        >  SRR4302535.2650439/1‑94 (MQ=60)
                                                                       CCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGG                        >  SRR4302535.527968/1‑94 (MQ=60)
                                                                        CTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGA                       >  SRR4302535.1130548/1‑94 (MQ=60)
                                                                         TTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTA                      <  SRR4302535.1033794/94‑1 (MQ=60)
                                                                          TCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAA                     <  SRR4302535.2208654/94‑1 (MQ=60)
                                                                           CTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAAT                    <  SRR4302535.3673395/94‑1 (MQ=60)
                                                                           CTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAAT                    >  SRR4302535.3242831/1‑94 (MQ=60)
                                                                             TCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAATAA                  >  SRR4302535.1414942/1‑94 (MQ=60)
                                                                               ATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAATAATC                >  SRR4302535.3107617/1‑94 (MQ=60)
                                                                                 CTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAATAATCGC              >  SRR4302535.1020038/1‑94 (MQ=60)
                                                                                      TGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAATAATCGCAACCT         >  SRR4302535.919167/1‑94 (MQ=60)
                                                                                       GCGAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAATAATCGCAACCTG        >  SRR4302535.4562341/1‑94 (MQ=60)
                                                                                       GCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAATAATCGCAACCTG        >  SRR4302535.4201620/1‑94 (MQ=60)
                                                                                        CCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAATAATCGCAACCTGT       >  SRR4302535.2760891/1‑94 (MQ=60)
                                                                                        CCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAATAATCGCAACCTGT       <  SRR4302535.2798398/94‑1 (MQ=60)
                                                                                        CCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAATAATCGCAACCTGT       >  SRR4302535.3073311/1‑94 (MQ=60)
                                                                                         CAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAATAATCGCAACCTGTG      >  SRR4302535.2216253/1‑94 (MQ=60)
                                                                                         CAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAATAATCGCAACCTGTG      <  SRR4302535.2781841/94‑1 (MQ=60)
                                                                                           GGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAATAATCGCAACCTGTGCC    >  SRR4302535.136426/1‑94 (MQ=60)
                                                                                             CAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAATAATCGCAACCTGTGCCAT  >  SRR4302535.2700708/1‑94 (MQ=60)
                                                                                             |                                                                                             
TGCCGAGATCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGTAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAATAATCGCAACCTGTGCCAT  >  NC_000913/2225104‑2225290

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: