Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,293,202 |
T→C |
M67V (ATG→GTG) |
ccmE ← |
cytochrome c biogenesis |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,293,202 | 0 | T | C | 100.0%
| 383.5
/ NA
| 123 | M67V (ATG→GTG) | ccmE | cytochrome c biogenesis |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (63/60); total (63/60) |
Only 100 of 131 total aligned reads displayed.
CTTCGTAAGAGACATCCACTGAGCCTTCAGCATCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCATCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCACGCTTGCCGTAGAGAATTTCCCCCGGCGTAT > NC_000913/2293112‑2293288
|
cTTCGTAAGAGACATCCACTGAGCCTTCAGCATCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCa < 1:2413149/93‑1 (MQ=255)
ttCGTAAGAGACATCCACTGAGCCTTCAGCATCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGcaccac > 1:3849860/1‑93 (MQ=255)
ttCGTAAGAGACATCCACTGAGCCTTCAGCATCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGcaccac > 1:3420555/1‑93 (MQ=255)
ttCGTAAGAGACATCCACTGAGCCTTCAGCATCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGcaccac > 2:2754998/1‑93 (MQ=255)
ttCGTAAGAGACATCCACTGAGCCTTCAGCATCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGcaccac > 1:2009128/1‑93 (MQ=255)
gTAAGAGACATCCACTGAGCCTTCAGCATCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCAt > 2:3569866/1‑93 (MQ=255)
gTAAGAGACATCCACTGAGCCTTCAGCATCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCAt > 2:3464693/1‑93 (MQ=255)
tAAGAGACATCCACTGAGCCTTCAGCATCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATc > 1:4464248/1‑93 (MQ=255)
aaGAGACATCCACTGAGCCTTCAGCATCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATcc < 2:3958856/93‑1 (MQ=255)
aaGAGACATCCACTGAGCCTTCAGCATCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATcc > 1:2691512/1‑93 (MQ=255)
aaGAGACATCCACTGAGCCTTCAGCATCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATcc < 2:2953380/93‑1 (MQ=255)
agagACATCCACTGAGCCTTCAGCATCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATccc > 1:3722436/1‑93 (MQ=255)
agagACATCCACTGAGCCTTCAGCATCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATccc > 1:1600985/1‑93 (MQ=255)
gagaCATCCACTGAGCCTTCAGCATCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATcccc > 2:3897040/1‑92 (MQ=255)
gagaCATCCACTGAGCCTTCAGCATCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCg > 2:2013749/1‑93 (MQ=255)
gaCATCCACTGAGCCTTCAGCATCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGcc < 2:901913/93‑1 (MQ=255)
aTCCACTGAGCCTTCAGCATCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAAc > 2:3087972/1‑93 (MQ=255)
aTCCACTGAGCCTTCAGCATCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAAc > 1:1993300/1‑93 (MQ=255)
aTCCACTGAGCCTTCAGCATCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAAc > 2:851921/1‑93 (MQ=255)
tCCACTGAGCCTTCAGCATCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAAcg > 2:1229069/1‑93 (MQ=255)
cACTGAGCCTTCAGCATCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAAcgcg > 1:2160868/1‑93 (MQ=255)
aCTGAGCCTTCAGCATCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACgcgc < 1:572456/93‑1 (MQ=255)
aCTGAGCCTTCAGCATCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACgcgc > 1:4499789/1‑93 (MQ=255)
gAGCCTTCAGCATCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGa < 1:2174765/93‑1 (MQ=255)
gAGCCTTCAGCATCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGa > 1:914987/1‑93 (MQ=255)
gAGCCTTCAGCATCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGa < 1:533500/93‑1 (MQ=255)
gAGCCTTCAGCATCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGa > 2:460521/1‑93 (MQ=255)
gAGCCTTCAGCATCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGa < 1:4419016/93‑1 (MQ=255)
aGCCTTCAGCATCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGAc < 2:3701844/93‑1 (MQ=255)
gCCTTCAGCATCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACg > 2:4135296/1‑93 (MQ=255)
gCCTTCAGCATCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACg > 2:917393/1‑93 (MQ=255)
ccTTCAGCATCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGc > 2:2345596/1‑93 (MQ=255)
ccTTCAGCATCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGc < 2:3138401/93‑1 (MQ=255)
ccTTCAGCATCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGc < 2:1088400/93‑1 (MQ=255)
cTTCAGCATCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCt > 2:1010295/1‑93 (MQ=255)
cTTCAGCATCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCt > 2:1203134/1‑93 (MQ=255)
tCAGCATCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGa < 1:3017947/93‑1 (MQ=255)
gCATCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCg > 2:693221/1‑93 (MQ=255)
tCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACt > 2:3812913/1‑93 (MQ=255)
tCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACt < 1:4563276/93‑1 (MQ=255)
tCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACt < 1:4222123/93‑1 (MQ=255)
tCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCACCCCGCCAACGCGCAGACGCTGACCGACt < 1:1379849/93‑1 (MQ=255)
tAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTcc < 2:244856/93‑1 (MQ=255)
aaaTGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCg < 1:3340188/93‑1 (MQ=255)
aTGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGc > 1:59361/1‑93 (MQ=255)
tGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCa > 2:1155952/1‑93 (MQ=255)
tGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCa > 1:1291949/1‑93 (MQ=255)
gTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCAtt > 2:3557733/1‑93 (MQ=255)
gTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCAtt < 2:3303271/93‑1 (MQ=255)
gTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCAtt < 2:1887689/93‑1 (MQ=255)
tGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCAttt < 2:4195331/93‑1 (MQ=255)
tGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCAttt < 1:767943/93‑1 (MQ=255)
gAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTg > 2:1902375/1‑93 (MQ=255)
aaGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGc > 1:1088876/1‑93 (MQ=255)
aGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCt > 2:3886686/1‑93 (MQ=255)
ggTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTg < 1:3072705/93‑1 (MQ=255)
ggTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTg > 1:3930717/1‑93 (MQ=255)
gTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGa > 1:1817253/1‑93 (MQ=255)
cACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGt < 2:3724778/93‑1 (MQ=255)
cACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGt > 1:1624754/1‑93 (MQ=255)
aCTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGtt > 1:4117078/1‑93 (MQ=255)
cTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGttt > 2:60665/1‑93 (MQ=255)
tttCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTc < 1:1591527/93‑1 (MQ=255)
tttCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTc < 2:4523262/93‑1 (MQ=255)
tttCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTc < 1:2813263/93‑1 (MQ=255)
tttCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTc > 1:803540/1‑93 (MQ=255)
ttCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCa < 2:607468/93‑1 (MQ=255)
ttCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCa < 2:416846/93‑1 (MQ=255)
cGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCACGCtt < 1:1140266/93‑1 (MQ=255)
gAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCACGCttc > 1:3232361/1‑92 (MQ=255)
aaTTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCACGCTTGc > 2:1623757/1‑93 (MQ=255)
aTTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCACGCTTGcc < 1:1635487/93‑1 (MQ=255)
ttGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCACGCTTGCCg > 1:4648401/1‑93 (MQ=255)
ttGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCACGCTTGCCg > 1:2675563/1‑93 (MQ=255)
ttGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCACGCTTGCCg < 1:795158/93‑1 (MQ=255)
tGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCACGCTTGCCGt < 1:2356232/93‑1 (MQ=255)
gATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCACGCTTGCCGTaga < 2:2343446/93‑1 (MQ=255)
gATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCACGCTTGCCGTaga > 1:3454059/1‑93 (MQ=255)
gATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCACGCTTGCCGTaga < 2:2434261/93‑1 (MQ=255)
aTCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCACGCTTGCCGTagag > 1:4453976/1‑93 (MQ=255)
tCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCACGCTTGCCGTAgaga < 1:382561/93‑1 (MQ=255)
cgcgCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCACGCTTGCCGTAGAGaa < 1:481670/93‑1 (MQ=255)
cgcgCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCACGCTTGCCGTAGAGaa < 1:393035/93‑1 (MQ=255)
cgcgCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCACGCTTGCCGTAGAGaa < 1:434228/93‑1 (MQ=255)
gcgcTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCACGCTTGCCGTAGAGAAt < 2:2923664/93‑1 (MQ=255)
gcgcTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCACGCTTGCCGTAGAGAAt > 1:3658169/1‑93 (MQ=255)
gcTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGCTTCACGCTTGCCGTAGAGAAttt > 1:3242365/1‑93 (MQ=255)
cTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCACGCTTGCCGTAGAGAATTTc < 1:4023070/93‑1 (MQ=255)
ctcacaATACCCGGCACCCCCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCACGCTTGCCGTAGAGAATTTcc < 2:2624338/91‑1 (MQ=255)
gCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCACGCTTGCCGTAGAGAATTTccc > 2:3684608/1‑93 (MQ=255)
gCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCACGCTTGCCGTAGAGAATTTccc < 1:4353990/93‑1 (MQ=255)
cacaCTGCCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCACGCTTGCCGTAGAGAATTTcccc < 2:3006034/93‑1 (MQ=255)
cacaCTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCACGCTTGCCGTAGAGAATTTcccc < 1:2743410/93‑1 (MQ=255)
cacaCTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCACGCATGCCGTAGAGAATTTcccc < 2:4579530/93‑1 (MQ=255)
acacTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCACGCTTGCCGTAGAGAATTTccccc > 1:3836/1‑93 (MQ=255)
cacTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCACGCTTGCCGTAGAGAATTTCCCCCg < 1:195360/93‑1 (MQ=255)
cTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCACGCTTGCCGTAGAGAATTTCCCCCGGc < 1:4344419/93‑1 (MQ=255)
cTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCACGCTTGCCGTAGAGAATTTCCCCCGGc < 1:409624/93‑1 (MQ=255)
aCCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCACGCTTGCCGTAGAGAATTTCCCCCGGCGt > 1:1570950/1‑93 (MQ=255)
ccGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCACGCTTGCCGTAGAGAATTTCCCCCGGCGtat > 1:839723/1‑93 (MQ=255)
|
CTTCGTAAGAGACATCCACTGAGCCTTCAGCATCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCATCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCACGCTTGCCGTAGAGAATTTCCCCCGGCGTAT > NC_000913/2293112‑2293288
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CTTCGTAAGAGACATCCACTGAGCCTTCAGCATCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCATCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCACGCTTGCCGTAGAGAATTTCCCCCGGCGTATAAAAGAG > NC_000913/2293112‑2293295
|
CTTCGTAAGAGACATCCACTGAGCCTTCAGCATCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCAC > SRR4302535.2023596/1‑94 (MQ=60)
CTTCGTAAGAGACATCCACTGAGCCTTCAGCATCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCAC < SRR4302535.2430523/94‑1 (MQ=60)
CTTCGTAAGAGACATCCACTGAGCCTTCAGCATCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCAC > SRR4302535.3876353/1‑94 (MQ=60)
CTTCGTAAGAGACATCCACTGAGCCTTCAGCATCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCAC > SRR4302535.3444344/1‑94 (MQ=60)
GTAAGAGACATCCACTGAGCCTTCAGCATCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATC > SRR4302535.4494866/1‑94 (MQ=60)
TAAGAGACATCCACTGAGCCTTCAGCATCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCC > SRR4302535.2710750/1‑94 (MQ=60)
AAGAGACATCCACTGAGCCTTCAGCATCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCC > SRR4302535.3748223/1‑94 (MQ=60)
AAGAGACATCCACTGAGCCTTCAGCATCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCC > SRR4302535.3155777/1‑94 (MQ=60)
AAGAGACATCCACTGAGCCTTCAGCATCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCC > SRR4302535.1612534/1‑94 (MQ=60)
ACATCCACTGAGCCTTCAGCATCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAA > SRR4302535.2770586/1‑94 (MQ=60)
CATCCACTGAGCCTTCAGCATCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAAC > SRR4302535.2007653/1‑94 (MQ=60)
CCACTGAGCCTTCAGCATCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCG > SRR4302535.2176382/1‑94 (MQ=60)
CACTGAGCCTTCAGCATCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGC > SRR4302535.4390182/1‑94 (MQ=60)
CACTGAGCCTTCAGCATCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGC > SRR4302535.4530686/1‑94 (MQ=60)
ACTGAGCCTTCAGCATCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCA < SRR4302535.576476/94‑1 (MQ=60)
CTGAGCCTTCAGCATCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAG < SRR4302535.43730/94‑1 (MQ=60)
TGAGCCTTCAGCATCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGA > SRR4302535.921484/1‑94 (MQ=60)
GAGCCTTCAGCATCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGAC < SRR4302535.2190317/94‑1 (MQ=60)
GAGCCTTCAGCATCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGAC < SRR4302535.4449273/94‑1 (MQ=60)
GAGCCTTCAGCATCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGAC < SRR4302535.537234/94‑1 (MQ=60)
AGCCTTCAGCATCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACG < SRR4302535.1539419/94‑1 (MQ=60)
TCAGCATCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGAC < SRR4302535.1839948/94‑1 (MQ=60)
TCAGCATCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGAC < SRR4302535.3039088/94‑1 (MQ=60)
CAGCATCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACC < SRR4302535.3882803/94‑1 (MQ=60)
ATCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACT < SRR4302535.706304/94‑1 (MQ=60)
TCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTT < SRR4302535.4594418/94‑1 (MQ=60)
TCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTT < SRR4302535.4251013/94‑1 (MQ=60)
TCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCACCCCGCCAACGCGCAGACGCTGACCGACTT < SRR4302535.1389690/94‑1 (MQ=60)
AAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGG < SRR4302535.3363463/94‑1 (MQ=60)
AATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGC > SRR4302535.59797/1‑94 (MQ=60)
ATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCA > SRR4302535.1301156/1‑94 (MQ=60)
tgtggagggtACTTTCAGCGAATTGGGAACGCGCTGCACACTACCCGGCATCACCAACCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATT < SRR4302535.816887/84‑1 (MQ=60)
TGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTG < SRR4302535.773349/94‑1 (MQ=60)
GAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGC > SRR4302535.1096625/1‑94 (MQ=60)
AGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTG > SRR4302535.2061060/1‑94 (MQ=60)
AGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTG > SRR4302535.3957557/1‑94 (MQ=60)
GGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGA < SRR4302535.3094157/94‑1 (MQ=60)
GGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGA > SRR4302535.1830386/1‑94 (MQ=60)
TCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGT > SRR4302535.1636485/1‑94 (MQ=60)
CACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTT > SRR4302535.4145259/1‑94 (MQ=60)
CTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTC > SRR4302535.809183/1‑94 (MQ=60)
TTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCA < SRR4302535.2833257/94‑1 (MQ=60)
TTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCA < SRR4302535.1603010/94‑1 (MQ=60)
CGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCACGCTTG < SRR4302535.1148390/94‑1 (MQ=60)
CGAATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCACGCTTC > SRR4302535.3254776/1‑94 (MQ=60)
ATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCACGCTTGCCG < SRR4302535.1647304/94‑1 (MQ=60)
ATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCACGCTTGCCG > SRR4302535.2694706/1‑94 (MQ=60)
ATTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCACGCTTGCCG > SRR4302535.4679885/1‑94 (MQ=60)
TTGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCACGCTTGCCGT < SRR4302535.800740/94‑1 (MQ=60)
TGGGGATCCCGCTGCACACTGCCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCACGCTTGCCGT < SRR4302535.3779202/94‑1 (MQ=60)
TGGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCACGCTTGCCGTA < SRR4302535.2373129/94‑1 (MQ=60)
GGGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCACGCTTGCCGTAG > SRR4302535.513522/1‑94 (MQ=60)
GGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCACGCTTGCCGTAGA > SRR4302535.3478070/1‑94 (MQ=60)
GGATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCACGCTTGCCGTAGA < SRR4302535.4567071/94‑1 (MQ=60)
GATCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCACGCTTGCCGTAGAG > SRR4302535.4484522/1‑94 (MQ=60)
TCGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCACGCTTGCCGTAGAGAA < SRR4302535.385209/94‑1 (MQ=60)
CGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCACGCTTGCCGTAGAGAAT < SRR4302535.395773/94‑1 (MQ=60)
CGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCACGCTTGCCGTAGAGAAT < SRR4302535.437251/94‑1 (MQ=60)
CGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCACGCTTGCCGTAGAGAAT < SRR4302535.485051/94‑1 (MQ=60)
CGCGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCACGCTTGCCGTAGAGAAT > SRR4302535.3683492/1‑94 (MQ=60)
CGCTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGCTTCACGCTTGCCGTAGAGAATTT > SRR4302535.3264887/1‑94 (MQ=60)
CTGCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCACGCTTGCCGTAGAGAATTTCC < SRR4302535.4050593/94‑1 (MQ=60)
GCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCACGCTTGCCGTAGAGAATTTCCCC < SRR4302535.4383789/94‑1 (MQ=60)
GCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCACGCTTGCCGTAGAGAATTTCCCC < SRR4302535.4107860/94‑1 (MQ=60)
GCACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCACGCTTGCCGTAGAGAATTTCCCC > SRR4302535.3365872/1‑94 (MQ=60)
CACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCACGCTTGCCGTAGAGAATTTCCCCC > SRR4302535.3870/1‑94 (MQ=60)
CACACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCACGCTTGCCGTAGAGAATTTCCCCC < SRR4302535.2762963/94‑1 (MQ=60)
CCACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCACGCTTGCCGTAGAGAATTTCCCCCG < SRR4302535.836604/94‑1 (MQ=60)
CACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCACGCTTGCCGTAGAGAATTTCCCCCGG < SRR4302535.2457663/94‑1 (MQ=60)
CACTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCACGCTTGCCGTAGAGAATTTCCCCCGG < SRR4302535.196703/94‑1 (MQ=60)
CTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCACGCTTGCCGTAGAGAATTTCCCCCGGCG < SRR4302535.4374139/94‑1 (MQ=60)
CTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCACGCTTGCCGTAGAGAATTTCCCCCGGCG < SRR4302535.412501/94‑1 (MQ=60)
CTACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCACGCTTGCCGTAGAGAATTTCCCCCGGCG < SRR4302535.1633265/94‑1 (MQ=60)
TACCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCACGCTTGCCGTAGAGAATTTCCCCCGGCGT > SRR4302535.1582291/1‑94 (MQ=60)
CCCGGCACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCACGCTTGCCGTAGAGAATTTCCCCCGGCGTAT > SRR4302535.845621/1‑94 (MQ=60)
CACCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCACGCTTGCCGTAGAGAATTTCCCCCGGCGTATAAAAG < SRR4302535.1881708/94‑1 (MQ=60)
CCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCACGCTTGCCGTAGAGAATTTCCCCCGGCGTATAAAAGAG < SRR4302535.4058366/94‑1 (MQ=60)
CCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCACGCTTGCCGTAGAGAATTTCCCCCGGCGTATAAAAGAG < SRR4302535.2303875/94‑1 (MQ=60)
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CTTCGTAAGAGACATCCACTGAGCCTTCAGCATCGTAAATGGTGAAGGTCACTTTCAGCGAATTGGGATCGCGCTGCACACTACCCGGCATCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTGAGTTTCACGCTTGCCGTAGAGAATTTCCCCCGGCGTATAAAAGAG > NC_000913/2293112‑2293295
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
