Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,935,409	T→C	intergenic (+28/‑51)	fucI → / → fucK	L‑fucose isomerase/L‑fuculokinase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,935,409	0	T	C	99.5%	624.4 / ‑5.2	204	intergenic (+28/‑51)	fucI/fucK	L‑fucose isomerase/L‑fuculokinase
Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (94/109); total (94/110)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.86e-01

Only 100 of 211 total aligned reads displayed.

ATGGATATTGAAGGCCAGGATTACCGCGCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGTCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCTATATTGCAGGAGCGATTATGAAACAA  >  NC_000913/2935319‑2935498

aTGGATATTGAAGGCCAGGATTACCGCGCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCg                                                                                         >  2:1184189/1‑93 (MQ=255)

   gATATTGAAGGCCAGGATTACCGCGCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTc                                                                                      >  2:1745602/1‑93 (MQ=255)

   gATATTGAAGGCCAGGATTACCGCGCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTc                                                                                      >  1:2525939/1‑93 (MQ=255)

    atatTGAAGGCCAGGATTACCGCGCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTcc                                                                                     >  2:259873/1‑93 (MQ=255)

    atatTGAAGGCCAGGATTACCGCGCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTcc                                                                                     >  1:1805139/1‑93 (MQ=255)

    atatTGAAGGCCAGGATTACCGCGCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTcc                                                                                     <  1:3363044/93‑1 (MQ=255)

     tatTGAAGGCCAGGATTACCGCGCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCg                                                                                    >  2:3242553/1‑93 (MQ=255)

      atTGAATGCCAGGATTACCGCGCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCgg                                                                                   <  1:482748/93‑1 (MQ=255)

       ttGAAGGCCAGGATTACCGCGCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGc                                                                                  <  2:1281355/93‑1 (MQ=255)

        tGAAGGCCAGGATTGCCGCTCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCt                                                                                 <  1:4087597/93‑1 (MQ=255)

         gAAGGCCAGTATTACCGCGCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTa                                                                                <  2:1973924/93‑1 (MQ=255)

         gAAGGCCAGGATTACCGCGCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTa                                                                                <  1:1680522/93‑1 (MQ=255)

           aGGCCAGGATTCCCGCGCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTAcc                                                                              <  2:3153475/93‑1 (MQ=255)

           aGGCCAGGATTACCGCGCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTAcc                                                                              <  2:4464554/93‑1 (MQ=255)

            ggCCAGGATTACCGCGCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCg                                                                             <  2:1060336/93‑1 (MQ=255)

            ggCCAGGATTACCGCGCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCg                                                                             >  1:1041277/1‑93 (MQ=255)

              ccAGGATTACCGCGCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCggg                                                                           >  1:3923738/1‑93 (MQ=255)

               cAGGATTACCGCGCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGc                                                                          >  2:2850100/1‑93 (MQ=255)

               cAGGATTACCGCGCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGc                                                                          >  2:1078222/1‑93 (MQ=255)

               cAGGATTACCGCGCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGc                                                                          >  1:3067070/1‑93 (MQ=255)

               cAGGATTACCGCGCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGc                                                                          <  1:3076737/93‑1 (MQ=255)

                aGGATTACCGCGCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGcc                                                                         >  2:1405472/1‑93 (MQ=255)

                aGGATTACCGCGCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGcc                                                                         <  2:1864547/93‑1 (MQ=255)

                aGGATTACCGCGCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGcc                                                                         >  1:635468/1‑93 (MQ=255)

                  gATTACCGCGCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCAGCTACCGGGCCTg                                                                       >  1:3949567/1‑93 (MQ=255)

                   aTTACCGCGCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGa                                                                      <  2:3052144/93‑1 (MQ=255)

                   aTTACCGCGCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGa                                                                      >  2:2083706/1‑93 (MQ=255)

                   aTTACCGCGCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGa                                                                      <  1:177169/93‑1 (MQ=255)

                   aTTACCGCGCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGa                                                                      >  2:2134622/1‑93 (MQ=255)

                      aCCGCGCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAAca                                                                   >  2:1569736/1‑93 (MQ=255)

                      aCCGCGCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAAca                                                                   >  2:861148/1‑93 (MQ=255)

                       ccGCGCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAAcaa                                                                  <  2:1177623/93‑1 (MQ=255)

                         gcgcTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAAcaagc                                                                >  1:2569163/1‑93 (MQ=255)

                         gcgcTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAAcaagc                                                                >  1:4373039/1‑93 (MQ=255)

                           gcTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAAcaagcaa                                                              >  1:2442353/1‑93 (MQ=255)

                           gcTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAAcaagcaa                                                              <  1:2162979/93‑1 (MQ=255)

                            cTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCGGCTCCGGCTACTGGGCCTGAAcaagcaag                                                             >  1:1060397/1‑93 (MQ=255)

                            cTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAAcaagcaag                                                             <  2:2538934/93‑1 (MQ=255)

                             ttGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAaga                                                            <  1:187369/93‑1 (MQ=255)

                                ccAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTg                                                         <  2:1012981/93‑1 (MQ=255)

                                  aGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGt                                                       <  1:1335571/93‑1 (MQ=255)

                                   gAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGtt                                                      <  1:1134005/93‑1 (MQ=255)

                                    aaCTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTa                                                     <  2:4361311/93‑1 (MQ=255)

                                    aaCTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTa                                                     <  2:428544/93‑1 (MQ=255)

                                    aaCTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTa                                                     <  2:2334740/93‑1 (MQ=255)

                                    aaCTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTa                                                     <  2:2045456/93‑1 (MQ=255)

                                     aCTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAg                                                    >  1:3685335/1‑93 (MQ=255)

                                      cTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGc                                                   <  1:1718044/93‑1 (MQ=255)

                                      cTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGCGGCTAGc                                                   >  1:4014614/1‑93 (MQ=255)

                                          ggTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGGCGGa                                               >  1:1108376/1‑93 (MQ=255)

                                          ggTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGa                                               <  1:4517469/93‑1 (MQ=255)

                                           gTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGAt                                              <  2:252565/93‑1 (MQ=255)

                                           gTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGAt                                              >  1:1466403/1‑93 (MQ=255)

                                              cGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAg                                           >  1:3788228/1‑93 (MQ=255)

                                              cGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAg                                           <  2:2436354/93‑1 (MQ=255)

                                              cGTTGTACAAGCGTTAATACATTACTCCCTGAGGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAg                                           <  1:2712956/93‑1 (MQ=255)

                                                ttGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCa                                         >  2:3394194/1‑93 (MQ=255)

                                                 tGTACAAGCGTTAATACATTACTCCCTGATGTGTTGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCaa                                        <  2:4027107/93‑1 (MQ=255)

                                                 tGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGTCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCaa                                        <  2:2805850/93‑1 (MQ=255)

                                                 tGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCaa                                        <  2:352225/93‑1 (MQ=255)

                                                  gTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAAt                                       <  1:155846/93‑1 (MQ=255)

                                                  gTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAAt                                       <  2:4233773/93‑1 (MQ=255)

                                                    aCAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGt                                     >  1:3046014/1‑93 (MQ=255)

                                                     cAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGtt                                    >  2:1695239/1‑93 (MQ=255)

                                                      aaGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTa                                   <  2:4662838/93‑1 (MQ=255)

                                                       aGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTAt                                  <  1:3114136/93‑1 (MQ=255)

                                                        gCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATc                                 <  1:2350324/93‑1 (MQ=255)

                                                        gCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATc                                 <  2:1912228/93‑1 (MQ=255)

                                                          gTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGCGGTTAGCCGGATAAGCAATGTTATCCg                               >  1:996484/1‑93 (MQ=255)

                                                            tAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGc                             <  1:4526674/93‑1 (MQ=255)

                                                                aCATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCtata                         <  2:3998473/93‑1 (MQ=255)

                                                                aCATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCtata                         <  2:3341932/93‑1 (MQ=255)

                                                                 cATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCTatat                        <  2:1586282/93‑1 (MQ=255)

                                                                 cATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCTatat                        <  1:355940/93‑1 (MQ=255)

                                                                  aTTGCTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCTATAtt                       <  2:783081/93‑1 (MQ=255)

                                                                  aTTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCTATAtt                       <  1:1943973/93‑1 (MQ=255)

                                                                  aTTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCTATAtt                       <  1:4244522/93‑1 (MQ=255)

                                                                  aTTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCTATAtt                       >  1:2801801/1‑93 (MQ=255)

                                                                     aCTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCTATATTGCa                    >  1:744160/1‑93 (MQ=255)

                                                                      cTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCTATATTGCAg                   <  1:2728036/93‑1 (MQ=255)

                                                                      cTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCTATATTGCAg                   <  2:3483043/93‑1 (MQ=255)

                                                                       tCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCTATATTGCAgg                  >  2:4509488/1‑93 (MQ=255)

                                                                        cccTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCTATATTGCAGGa                 >  1:3473749/1‑93 (MQ=255)

                                                                         ccTGATGTGATGCCCGGCCGCTCCGGATACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCTATAGTGCAGGAg                <  1:2859223/93‑1 (MQ=255)

                                                                          cTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCTATATTGCAGGAGc               <  2:2643227/93‑1 (MQ=255)

                                                                          cTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCTATATTGCAGGAGc               <  1:3389838/93‑1 (MQ=255)

                                                                          cTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCTATATTGCAGGAGc               >  1:2238555/1‑93 (MQ=255)

                                                                            gatgtgatgCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCTATATTGCAGGAGCGa             >  1:591430/1‑93 (MQ=255)

                                                                             atgtgatgCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCTATATTGCAGGAGCGAt            <  2:1891924/93‑1 (MQ=255)

                                                                              tgtgatgCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCTATATTGCCGGAGCGAtt           >  1:1445946/1‑93 (MQ=255)

                                                                               gtgatgCGCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCTATATTGCAGGAGCGATTa          >  2:3804381/1‑93 (MQ=255)

                                                                               gtgatgCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCTATATTGCAGGAGCGATTa          <  1:1195616/93‑1 (MQ=255)

                                                                               gtgatgCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCTATATTGCAGGAGCGATTa          <  1:2092126/93‑1 (MQ=255)

                                                                                  atgCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCTATATTGCAGGAGCGATTATGa       >  1:1991011/1‑93 (MQ=255)

                                                                                  atgCCCGGCCGCTCCGGCTACCGGGCATGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCTATATTGCAGGAGCGATTATGa       <  1:4035373/93‑1 (MQ=255)

                                                                                     cccGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCTATATTGCAGGAGCGATTATGaaaa    >  1:901067/1‑92 (MQ=255)

                                                                                     cccGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGGGGTTAGCCGGATAAGCAATGTTATCCGGCTATATTGCAGGAGCGATTATGaaaa    >  2:359958/1‑92 (MQ=255)

                                                                                      ccGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCTATATTGCAGGAGCGATTATGAAACa   <  2:442304/93‑1 (MQ=255)

                                                                                       cGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCTATATTGCTGGAGCGATTATGAAACaa  >  1:529229/1‑93 (MQ=255)

                                                                                       cGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCTATATTGCAGGAGCGATTATGAAACaa  <  2:635468/93‑1 (MQ=255)

ATGGATATTGAAGGCCAGGATTACCGCGCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGTCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCTATATTGCAGGAGCGATTATGAAACAA  >  NC_000913/2935319‑2935498

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GGCATGGATATTGAAGGCCAGGATTACCGCGCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGTCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCTATATTGCAGGAGCGATTATGAAACAAGAAG  >  NC_000913/2935316‑2935502

GGCATGGATATTGAAGGCCAGGATTACCGCGCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGC                                                                                               >  SRR4302535.4671779/1‑94 (MQ=60)

 GCATGGATATTGAAGGCCAGGATTACCGCGCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCC                                                                                              >  SRR4302535.3960301/1‑94 (MQ=60)

 GCATGGATATTGAAGGCCAGGATTACCGCGCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCC                                                                                              >  SRR4302535.1350547/1‑94 (MQ=60)

  CATGGATATTGAAGGCCAGGATTACCGCGCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCG                                                                                             >  SRR4302535.2549485/1‑94 (MQ=60)

    TGGATATTGAAGGCCAGGATTACCGCGCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCT                                                                                           >  SRR4302535.1115692/1‑94 (MQ=60)

    TGGATATTGAAGGCCAGGATTACCGCGCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCT                                                                                           <  SRR4302535.1848490/94‑1 (MQ=60)

     GGATATTGAAGGCCAGGATTACCGCGCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTC                                                                                          >  SRR4302535.2544138/1‑94 (MQ=60)

      GATATTGAAGGCCAGGATTACCGCGCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCC                                                                                         >  SRR4302535.1818183/1‑94 (MQ=60)

       ATATTGAAGGCCAGGATTACCGCGCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCG                                                                                        <  SRR4302535.3386445/94‑1 (MQ=60)

         ATTGAATGCCAGGATTACCGCGCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGC                                                                                      <  SRR4302535.486132/94‑1 (MQ=60)

         ATTGAAGGCCAGGATTACCGCGCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGC                                                                                      >  SRR4302535.3892079/1‑94 (MQ=60)

          TTGAAGGCCAGGATTACCGCGCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTCCTCCCTGATGTGATGCCCGGCCGCTCCGGCT                                                                                     <  SRR4302535.1807368/94‑1 (MQ=60)

           TGAAGGCCAGGATTGCCGCTCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTA                                                                                    <  SRR4302535.4115563/94‑1 (MQ=60)

           TGAAGGCCAGGATTACCGCGCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTA                                                                                    <  SRR4302535.282920/94‑1 (MQ=60)

           TGAAGGCCAGGATTACCGCGCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTA                                                                                    >  SRR4302535.2813569/1‑94 (MQ=60)

            GAAGGCCAGGATTACCGCGCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTAC                                                                                   <  SRR4302535.1692694/94‑1 (MQ=60)

              AGGCCAGGATTACCGCGCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCG                                                                                 >  SRR4302535.1172921/1‑94 (MQ=60)

              AGGCCAGGATTACCGCGCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCG                                                                                 >  SRR4302535.1048661/1‑94 (MQ=60)

                GCCAGGATTACCGCGCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGG                                                                               >  SRR4302535.3950551/1‑94 (MQ=60)

                GCCAGGATTACCGCGCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGG                                                                               <  SRR4302535.1268580/94‑1 (MQ=60)

                 CCAGGATTACCGCGCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGC                                                                              >  SRR4302535.3088500/1‑94 (MQ=60)

                 CCAGGATTACCGCGCTTGCCAGAACTACGGTCCCTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGC                                                                              >  SRR4302535.4225289/1‑94 (MQ=60)

                  CAGGATTACCGCGCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCC                                                                             <  SRR4302535.3098200/94‑1 (MQ=60)

                  CAGGATTACCGCGCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCC                                                                             >  SRR4302535.639899/1‑94 (MQ=60)

                   AGGATTACCGCGCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCT                                                                            >  SRR4302535.411150/1‑94 (MQ=60)

                    GGATTACCGCGCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCAGCTACCGGGCCTG                                                                           >  SRR4302535.3976534/1‑94 (MQ=60)

                      ATTACCGCGCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAA                                                                         <  SRR4302535.178399/94‑1 (MQ=60)

                        TACCGCGCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACA                                                                       <  SRR4302535.4042193/94‑1 (MQ=60)

                        TACCGCGCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACA                                                                       >  SRR4302535.3082497/1‑94 (MQ=60)

                           CGCGCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGC                                                                    >  SRR4302535.4402959/1‑94 (MQ=60)

                           CGCGCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGC                                                                    >  SRR4302535.2587642/1‑94 (MQ=60)

                             CGCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAA                                                                  >  SRR4302535.2459947/1‑94 (MQ=60)

                             CGCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAA                                                                  <  SRR4302535.1741582/94‑1 (MQ=60)

                              GCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCGGCTCCGGCTACTGGGCCTGAACAAGCAAG                                                                 >  SRR4302535.1067945/1‑94 (MQ=60)

                              GCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAG                                                                 >  SRR4302535.1463493/1‑94 (MQ=60)

                              GCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAG                                                                 <  SRR4302535.2178497/94‑1 (MQ=60)

                              GCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAG                                                                 <  SRR4302535.2320670/94‑1 (MQ=60)

                                TTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAG                                                               <  SRR4302535.188664/94‑1 (MQ=60)

                                TTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAG                                                               <  SRR4302535.4508091/94‑1 (MQ=60)

                                 TGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGT                                                              >  SRR4302535.1949696/1‑94 (MQ=60)

                                     AGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTT                                                          <  SRR4302535.1345099/94‑1 (MQ=60)

                                     AGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTT                                                          >  SRR4302535.3605972/1‑94 (MQ=60)

                                      GAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTA                                                         <  SRR4302535.106483/94‑1 (MQ=60)

                                      GAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTA                                                         <  SRR4302535.1142098/94‑1 (MQ=60)

                                       AACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAG                                                        >  SRR4302535.307200/1‑94 (MQ=60)

                                       AACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAG                                                        >  SRR4302535.3710832/1‑94 (MQ=60)

                                       AACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAG                                                        <  SRR4302535.2133096/94‑1 (MQ=60)

                                        ACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGCGGCTAGC                                                       >  SRR4302535.4042071/1‑94 (MQ=60)

                                         CTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCC                                                      <  SRR4302535.1730474/94‑1 (MQ=60)

                                         CTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCC                                                      <  SRR4302535.3096057/94‑1 (MQ=60)

                                            CGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGGCGGA                                                   >  SRR4302535.1116294/1‑94 (MQ=60)

                                            CGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGA                                                   >  SRR4302535.902380/1‑94 (MQ=60)

                                             GGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGAT                                                  >  SRR4302535.1476909/1‑94 (MQ=60)

                                             GGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGAT                                                  <  SRR4302535.4548432/94‑1 (MQ=60)

                                              GTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATA                                                 >  SRR4302535.3113070/1‑94 (MQ=60)

                                               TCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAA                                                >  SRR4302535.471265/1‑94 (MQ=60)

                                               TCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAA                                                <  SRR4302535.61666/94‑1 (MQ=60)

                                                CCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAG                                               <  SRR4302535.4656341/94‑1 (MQ=60)

                                                CCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAG                                               >  SRR4302535.3814356/1‑94 (MQ=60)

                                                 CGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGC                                              >  SRR4302535.1709708/1‑94 (MQ=60)

                                                 CGTTGTACAAGCGTTAATACATTACTCCCTGAGGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGC                                              <  SRR4302535.2732341/94‑1 (MQ=60)

                                                    TGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAAT                                           <  SRR4302535.1369392/94‑1 (MQ=60)

                                                     GTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATG                                          <  SRR4302535.3840254/94‑1 (MQ=60)

                                                     GTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATG                                          <  SRR4302535.3389958/94‑1 (MQ=60)

                                                     GTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATG                                          <  SRR4302535.156950/94‑1 (MQ=60)

                                                     GTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATG                                          <  SRR4302535.161639/94‑1 (MQ=60)

                                                      TACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGT                                         >  SRR4302535.3067350/1‑94 (MQ=60)

                                                          AGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATC                                     <  SRR4302535.3135815/94‑1 (MQ=60)

                                                          AGCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATC                                     >  SRR4302535.3421898/1‑94 (MQ=60)

                                                           GCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCC                                    >  SRR4302535.2733977/1‑94 (MQ=60)

                                                           GCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCC                                    <  SRR4302535.2416994/94‑1 (MQ=60)

                                                           GCGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCC                                    <  SRR4302535.2367172/94‑1 (MQ=60)

                                                            CGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCG                                   >  SRR4302535.1134667/1‑94 (MQ=60)

                                                            CGTTAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGCGGTTAGCCGGATAAGCAATGTTATCCG                                   >  SRR4302535.1003561/1‑94 (MQ=60)

                                                               TAATACATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCT                                <  SRR4302535.4557681/94‑1 (MQ=60)

                                                                    CATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCTATATT                           <  SRR4302535.358397/94‑1 (MQ=60)

                                                                    CATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCTATATT                           >  SRR4302535.2821729/1‑94 (MQ=60)

                                                                     ATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCTATATTG                          >  SRR4302535.2086800/1‑94 (MQ=60)

                                                                     ATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCTATATTG                          <  SRR4302535.1957973/94‑1 (MQ=60)

                                                                     ATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCTATATTG                          <  SRR4302535.4273575/94‑1 (MQ=60)

                                                                     ATTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGACGGATAAGCAATGTTATTCGGCTATATTA                          >  SRR4302535.3223504/1‑94 (MQ=60)

                                                                      TTACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCTATATTGC                         >  SRR4302535.4552872/1‑94 (MQ=60)

                                                                       TACTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCTATATTGCA                        >  SRR4302535.749386/1‑94 (MQ=60)

                                                                        TCTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCTATATTGCAG                       <  SRR4302535.2643057/94‑1 (MQ=60)

                                                                         CTCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCTATATTGCAGG                      <  SRR4302535.2747516/94‑1 (MQ=60)

                                                                          TCCCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCTATATTGCAGGA                     >  SRR4302535.3497885/1‑94 (MQ=60)

                                                                            CCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCTATATTGCAGGAGG                   >  SRR4302535.744425/1‑94 (MQ=60)

                                                                            CCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCTATATTGCAGGAGC                   >  SRR4302535.2254480/1‑94 (MQ=60)

                                                                            CCTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAAAGATATCCGGCTAAATTGCAGGAGC                   >  SRR4302535.1514702/1‑94 (MQ=60)

                                                                            CCTGATGTGATGCCCGGCCGCTCCGGATACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCTATAGTGCAGGAGC                   <  SRR4302535.2879477/94‑1 (MQ=60)

                                                                             CTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCTATATTGCAGGAGCG                  <  SRR4302535.2271913/94‑1 (MQ=60)

                                                                             CTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCTATATTGCAGGAGCG                  <  SRR4302535.4369120/94‑1 (MQ=60)

                                                                             CTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCTATATTGCAGGAGCG                  <  SRR4302535.217979/94‑1 (MQ=60)

                                                                             CTGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCTATATTGCAGGAGCG                  <  SRR4302535.3413419/94‑1 (MQ=60)

                                                                              TGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCTATATTGCAGGAGCGA                 <  SRR4302535.509215/94‑1 (MQ=60)

                                                                              TGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCTATATTGCAGGAGCGA                 >  SRR4302535.595572/1‑94 (MQ=60)

                                                                              TGATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCTATATTGCAGGAGCGA                 >  SRR4302535.1725498/1‑94 (MQ=60)

                                                                               GATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCTATATTGCAGGAGCGAT                <  SRR4302535.4036518/94‑1 (MQ=60)

                                                                                ATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCTATATTGCCGGAGCGATT               >  SRR4302535.1456286/1‑94 (MQ=60)

                                                                                ATGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCTATATTGCAGGAGCGATT               <  SRR4302535.2523983/94‑1 (MQ=60)

                                                                                ATGTGATGCCCGGCCGCTCCGGCTACCGGGCATGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCTATATTGCAGGAGCGATT               <  SRR4302535.2899673/94‑1 (MQ=60)

                                                                                 TGTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCTATATTGCAGGAGCGATTA              >  SRR4302535.3724576/1‑94 (MQ=60)

                                                                                  GTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCTATATTGCAGGAGCGATTAT             <  SRR4302535.2107200/94‑1 (MQ=60)

                                                                                  GTGATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCTATATTGCAGGAGCGATTAT             <  SRR4302535.1204182/94‑1 (MQ=60)

                                                                                    GATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCTATATTGCAGGAGCGATTATGA           >  SRR4302535.2005348/1‑94 (MQ=60)

                                                                                     ATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCTATATTGCAGGAGCGATTATGAA          >  SRR4302535.59396/1‑94 (MQ=60)

                                                                                     ATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCTATATTGCAGGAGCGATTATGAA          <  SRR4302535.1002153/94‑1 (MQ=60)

                                                                                     ATGCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCTATATTGCAGGAGCGATTATGAA          <  SRR4302535.196955/94‑1 (MQ=60)

                                                                                     ATGCCCGGCCGCTCCGGCTACCGGGCATGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCTATATTGCAGGAGCGATTATGAA          <  SRR4302535.4062999/94‑1 (MQ=60)

                                                                                       GCCCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCTATATTGCAGGAGCGATTATGAAAA        >  SRR4302535.907446/1‑94 (MQ=60)

                                                                                         CCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCTATATTGCTGGAGCGATTATGAAACAA      >  SRR4302535.532931/1‑94 (MQ=60)

                                                                                         CCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCTATATTGCAGGAGCGATTATGAAACAA      >  SRR4302535.3970087/1‑94 (MQ=60)

                                                                                         CCGGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCTATATTGCAGGAGCGATTATGAAACAA      <  SRR4302535.3581779/94‑1 (MQ=60)

                                                                                          CGGCCGCTCCGGCTACTGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCTATATTGCAGGAGCGATTATGAAACAAA     >  SRR4302535.4427387/1‑94 (MQ=60)

                                                                                           GGCCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCTATATTGCAGGAGCGATTATGAAACAAGA    >  SRR4302535.4312569/1‑94 (MQ=60)

                                                                                             CCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCTATGTTATCCGGCTATATTGCAGGAGCGATTATGAAACAAGAAG  <  SRR4302535.3317643/94‑1 (MQ=60)

GGCATGGATATTGAAGGCCAGGATTACCGCGCTTGCCAGAACTACGGTCCGTTGTACAAGCGTTAATACATTACTCCCTGATGTGATGCCCGGTCGCTCCGGCTACCGGGCCTGAACAAGCAAGAGTGGTTAGCCGGATAAGCAATGTTATCCGGCTATATTGCAGGAGCGATTATGAAACAAGAAG  >  NC_000913/2935316‑2935502

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`