Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,047,558 |
T→C |
V4V (GTA→GTG) |
gcvH ← |
GcvH |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,047,558 | 0 | T | C | 99.6%
| 784.9
/ ‑5.2
| 249 | V4V (GTA→GTG) | gcvH | GcvH |
| Reads supporting (aligned to +/- strand): ref base T (1/0); new base C (132/116); total (133/116) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.32e-01 |
Only 100 of 253 total aligned reads displayed.
CTGAGCATGTTCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGTACGTTGCTCATCAATCAATCTCC‑AAAAAAGTAAATCACGCGA‑CGGCTTTGCCGTT‑ACGCACAAAAACAGGTTTTGTCACTTTAACCGGC > NC_000913/3047468‑3047647
|
cTGAGCATGTTCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCAc > 2:1491907/1‑93 (MQ=255)
cTGAGCATGTTCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCAc > 2:2852698/1‑93 (MQ=255)
tGAGCATGTTCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACg > 1:878905/1‑93 (MQ=255)
aGCATGTTCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGGCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGtt < 1:3468535/93‑1 (MQ=255)
aGCATGTTCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGtt < 1:2356536/93‑1 (MQ=255)
aGCATGTTCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGGTCTTTGCTGTATTTCAGTTCTGCTGGCACGtt > 2:1129594/1‑93 (MQ=255)
cATGTTCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGc < 1:3058305/93‑1 (MQ=255)
cATGTTCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGc < 2:2659887/93‑1 (MQ=255)
cATGTTCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGc < 2:1223288/93‑1 (MQ=255)
aTGTTCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCt > 2:348030/1‑93 (MQ=255)
aTGTTCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCt < 2:4328205/93‑1 (MQ=255)
aTGTTCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCt < 1:2252201/93‑1 (MQ=255)
tGTTCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCtc > 2:3994262/1‑93 (MQ=255)
gTTCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCtca < 2:4215205/93‑1 (MQ=255)
gTTCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCtca > 2:897019/1‑93 (MQ=255)
ttCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCtcat < 1:2457484/93‑1 (MQ=255)
tAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCatcaatc < 2:2412771/93‑1 (MQ=255)
aTACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCAtcaatcaa < 1:3198084/93‑1 (MQ=255)
aTACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCAtcaatcaa > 1:2882931/1‑93 (MQ=255)
aCCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCaatcaatc < 2:1006668/93‑1 (MQ=255)
aCCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCaatcaatc > 1:808640/1‑93 (MQ=255)
cAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAAtctc > 1:208241/1‑93 (MQ=255)
aaCGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTcc < 2:2140486/93‑1 (MQ=255)
aaCGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTcc > 1:180930/1‑93 (MQ=255)
aaCGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTcc > 1:4078820/1‑93 (MQ=255)
aaCGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTcc < 1:1476406/93‑1 (MQ=255)
aaCGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTcc > 1:1486842/1‑93 (MQ=255)
cGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCC‑aa < 2:3367044/93‑1 (MQ=255)
ggTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCC‑aaa > 1:3178997/1‑93 (MQ=255)
ggTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCC‑aaa > 2:4475351/1‑93 (MQ=255)
ggTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTAC‑aca > 1:1174415/1‑91 (MQ=255)
gtgtAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCC‑aaaa > 1:2824318/1‑93 (MQ=255)
gtAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCC‑aaaaaa < 2:3094390/93‑1 (MQ=255)
gtAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCC‑aaaaaa > 1:2176287/1‑93 (MQ=255)
tAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCC‑AAAAAAg > 2:3299399/1‑93 (MQ=255)
tAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCC‑AAAAAAg > 2:3394783/1‑93 (MQ=255)
aGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCC‑AAAAAAGTa < 2:2506339/93‑1 (MQ=255)
aGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCC‑AAAAAAGTa < 2:1311512/93‑1 (MQ=255)
gTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCC‑AAAAAAGTaa < 1:3099024/93‑1 (MQ=255)
gTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCC‑AAAAAAGTaa < 1:4285201/93‑1 (MQ=255)
gTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCC‑AAAAAAGTaa > 1:1278103/1‑93 (MQ=255)
gTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCC‑AAAAAAGTaa > 1:2849903/1‑93 (MQ=255)
ttccGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCC‑AAAAAAGTaaa < 2:1757360/91‑1 (MQ=255)
tGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCC‑AAAAAAGTaaa < 1:3991907/93‑1 (MQ=255)
gCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCC‑AAAAAAGTAAAt < 2:1665458/93‑1 (MQ=255)
gCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCC‑AAAAAAGTAAAt > 2:830168/1‑93 (MQ=255)
ccGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCC‑AAAAAAGTAAATc < 1:2664566/93‑1 (MQ=255)
cGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCC‑AAAAAAGTAAATCa < 2:2003834/93‑1 (MQ=255)
gTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCC‑AAAAAAGTAAATCAc < 2:453117/93‑1 (MQ=255)
tCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCC‑AAAAAAGTAAATCAcg > 1:3679366/1‑93 (MQ=255)
tCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCC‑AAAAAAGTAAATCAcg < 2:1442297/93‑1 (MQ=255)
gCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCC‑AAAAAAGTAAATCACGCGa > 2:4085112/1‑93 (MQ=255)
ttcttTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCC‑AAAAAAGTAAATCACGCGA‑Cg < 1:4594553/93‑1 (MQ=255)
cttTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCC‑AAAAAAGTAAATCACGCGA‑CGGc < 1:270840/93‑1 (MQ=255)
tttACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCC‑AAAAAAGTAAATCACGCGA‑CGGCt > 1:4610757/1‑93 (MQ=255)
tttACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCC‑AAAAAAGTAAATCACGCGA‑CGGCt > 2:1824979/1‑93 (MQ=255)
tttACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCC‑AAAAAAGTAAATCACGCGA‑CGGCt < 1:3644842/93‑1 (MQ=255)
ttACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCC‑AAAAAAGTAAATCACGCGA‑CGGCtt > 2:2267997/1‑93 (MQ=255)
aCGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCC‑AAAAAAGTAAATCACGCGA‑CGGCTTTg > 2:721600/1‑93 (MQ=255)
cGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCC‑AAAAAAGTAAATCACGCGA‑CGGCTTTGc < 2:2049356/93‑1 (MQ=255)
aGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCC‑AAAAAAGTAAATCACGCGA‑CGGCTTTGCCGt < 2:930557/93‑1 (MQ=255)
ccATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCC‑AAAAAAGTAAATCACGCGA‑CGGCTTTGCCGTT‑a < 1:1009324/93‑1 (MQ=255)
ccATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCC‑AAAAAAGTAAATCACGCGA‑CGGCTTTGCCGTT‑a < 2:3850443/93‑1 (MQ=255)
ccATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCC‑AAAAAAGTAAATCACGCGA‑CGGCTTTGCCGTT‑a < 1:3885535/93‑1 (MQ=255)
ccATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCC‑AAAAAAGTAAATCACGCGA‑CGGCTTTGCCGTT‑a > 2:2187611/1‑93 (MQ=255)
cATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCC‑AAAAAAGTAAATCACGCGA‑CGGCTTTGCCGTT‑Ac < 1:1351870/93‑1 (MQ=255)
aTTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCC‑AAAAAAGTAAATCACGCGA‑CGGCTTTGTCGTT‑ACg > 1:4212504/1‑93 (MQ=255)
ttCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAAGTAAATCACGCGA‑CGGCTTTGCCGTT‑ACg > 2:495698/1‑93 (MQ=255)
ttCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCC‑AAAAAAGTAAATCACGCGA‑CGGCTTTGCCGTT‑ACGc > 2:2936852/1‑93 (MQ=255)
tCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCC‑AAAAAAGTAAATCACGCGA‑CGGCTTTGCCGTT‑ACGca < 2:784452/93‑1 (MQ=255)
gtgtTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCC‑AAAAAAGTAAATCACGCGA‑CGGCTTTGCCGTT‑ACGcaca > 2:2094463/1‑93 (MQ=255)
gtgtTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCC‑AAAAAAGTAAATCACGCGA‑CGGCTTTGCCGTT‑ACGcaca > 1:1793314/1‑93 (MQ=255)
gtgtTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCC‑AAAAAAGTAAATCACGCGA‑CGGCTTTGCCGTT‑ACGcaca > 1:1856965/1‑93 (MQ=255)
tgtTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCC‑AAAAAAGTAAATCACGCGA‑CGGCTTTGCCGTT‑ACGCACaa > 2:4106524/1‑93 (MQ=255)
tCTTTGCTGTATTTCAGTTCTGCTGGTACGTTGCTCATCAATCAATCTCC‑AAAAAAGTAAATCACGCGA‑CGGCTTTGCCGTT‑ACGCACaaaaa > 1:2937674/1‑93 (MQ=255)
cTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCC‑AAAAAAGTAAATCACGCGA‑CGGCTTTGCCGTT‑ACGCACAAAAAc < 2:3790288/93‑1 (MQ=255)
tttGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCC‑AAAAAAGTAAATCACGCGA‑CGGCTTTGCCGTT‑ACGCACAAAAACa > 1:1214715/1‑93 (MQ=255)
ttGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCC‑AAAAAAGTAAATCACGCGA‑CGGCTTTGCCGTT‑ACGCACAAAAACAg < 1:276681/93‑1 (MQ=255)
tGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCC‑AAAAAAGTAAATCACGCGA‑CGGCTTTGCCGTT‑ACGCACAAAAACAgg < 1:4445206/93‑1 (MQ=255)
gCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCC‑AAAAAAGTAAATCACGCGA‑CGGCTTTGCCGTT‑ACGCACAAAAACAGGt < 2:3609345/93‑1 (MQ=255)
cTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCC‑AAAAAAGTAAATCACGCGA‑CGGCTTTGCCGTT‑ACGCACAAAAACAGGtt < 1:3582053/93‑1 (MQ=255)
tGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCC‑AAAAAAGTAAATCACGCGA‑CGGCTTTGCCGTT‑ACGCACAAAAACAGGttt > 1:3787162/1‑93 (MQ=255)
tGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCC‑AAAAAAGTAAATCACGCGA‑CGGCTTTGCCGTT‑ACGCACAAAAACAGGttt > 1:1154304/1‑93 (MQ=255)
tATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCC‑AAAAAAGTAAATCACGCGA‑CGGCTTTGCCGTT‑ACGCACAAAAACAGGTTTTg > 2:1403464/1‑93 (MQ=255)
tttCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCC‑AAAAAAGTAAATCACGCGA‑CGGCTTTGCCGTT‑ACGCACAAAAACAGGTTTTGTc > 1:4669648/1‑93 (MQ=255)
tttCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCC‑AAAAAAGTAAATCACGCGA‑CGGCTTTGCCGTT‑ACGCACAAAAACAGGTTTTGTc < 2:3635982/93‑1 (MQ=255)
tttCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCC‑AAAAAAGTAAATCACGCGA‑CGGCTTTGCCGTT‑ACGCACAAAAACAGGTTTTGTc < 1:280547/93‑1 (MQ=255)
tttCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCC‑AAAAAAGTAAAACACGCGACCGGCTTTTCCGTTCACCCAAAAAAAAAAGttttt > 2:2821543/1‑92 (MQ=255)
tCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCC‑AAAAAAGTAAATCACGCGA‑CGGCTTTGCCGTT‑ACGCACAAAAACAGGTTTTGTCAc > 1:2549142/1‑93 (MQ=255)
tCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCC‑AAAAAAGTAAATCACGCGA‑CGGCTTTGCCGTT‑ACGCACAAAAACAGGTTTTGTCAc < 1:1913093/93‑1 (MQ=255)
aGTTCTGCTTGCACGTTGCTCATCAATCAATCTCC‑AAAAAAGTAAATCACGCGA‑CGGCTTTGCCGTT‑ACGCACAAAAACAGGTTTTGTCACtt < 1:3932236/93‑1 (MQ=255)
aGTTCTGCTGGCACGTTGCTCATCAATCAATCTCC‑AAAAAAGTAAATCACGCGA‑CGGCTTTGCCGTT‑ACGCACAAAAACAGGTTTTGTCACtt < 2:662919/93‑1 (MQ=255)
aGTTCTGCTGGCACGTTGCTCATCAATCAATCTCC‑AAAAAAGTAAATCACGCGA‑CGGCTTTGCCGTT‑ACGCACAAAAACAGGTTTTGTCACtt > 1:2335035/1‑93 (MQ=255)
aGTTCTGCTGGCACGTTGCTCATCAATCAATCTCC‑AAAAAAGTAAATCACGCGA‑CGGCTTTGCCGTT‑ACGCACAAAAACAGGTTTTGTCACtt < 1:1301016/93‑1 (MQ=255)
aGTTCTGCTGGCACGTTGCTCATCAATCAATCTCC‑AAAAAAGTAAATCACGCGA‑CGGCTTTGCCGTT‑ACGCACAAAAACAGGTTTTGTCACtt < 1:1131067/93‑1 (MQ=255)
attCTGCTGGCACGTTGCTCATCAATCAATCTCC‑AAAAAAGTAAATCACGCGA‑CGGCTTTGCCGTT‑ACGCACAAAAACAGGTTTTGTCACttt < 2:2339743/92‑1 (MQ=255)
ttCTGCTGGCACGTTGCTCATCAATCAATCTCC‑AAAAAAGTAAATCACGCGA‑CGGCTTTGCCGTT‑ACGCACAAAAACAGGTTTTGTCACTTTa > 1:4375067/1‑93 (MQ=255)
tCTGCTGGCACGTTGCTCATCAATCAATCTCC‑AAAAAAGTAAATCACGCGA‑CGGCTTTGCCGTT‑ACGCACAAAAACAGGTTTTGTCACTTTaa < 1:4519824/93‑1 (MQ=255)
gctgGCACGTTGCTCATCAATCAATCTCC‑AAAAAAGTAAATCACGCGA‑CGGCTTTGCCGTT‑ACGCACAAAAACAGGTTTTGTCACTTTAACCg > 2:2626720/1‑93 (MQ=255)
tgGCACGTTGCTCATCAATCAATCTCC‑AAAAAAGTAAATCACGCGA‑CGGCTTTGCCGTT‑ACGCACAAAAACAGGTTTTGTCACTTTAACCGGc < 1:3724599/93‑1 (MQ=255)
|
CTGAGCATGTTCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGTACGTTGCTCATCAATCAATCTCC‑AAAAAAGTAAATCACGCGA‑CGGCTTTGCCGTT‑ACGCACAAAAACAGGTTTTGTCACTTTAACCGGC > NC_000913/3047468‑3047647
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CTCCTGAGCATGTTCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGTACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCACTTTAACCGGCAT > NC_000913/3047465‑3047649
|
CTCCTGAGCATGTTCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGC > SRR4302535.4179499/1‑94 (MQ=60)
CCTGAGCATGTTCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCAC > SRR4302535.1381348/1‑94 (MQ=60)
CTGAGCATGTTCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACG > SRR4302535.885130/1‑94 (MQ=60)
AGCATGTTCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGGCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTG < SRR4302535.3492637/94‑1 (MQ=60)
AGCATGTTCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTG < SRR4302535.3186868/94‑1 (MQ=60)
AGCATGTTCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTG < SRR4302535.2373435/94‑1 (MQ=60)
CATGTTCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCT < SRR4302535.3079698/94‑1 (MQ=60)
ATGTTCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTC > SRR4302535.4512920/1‑94 (MQ=60)
ATGTTCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTC > SRR4302535.3912842/1‑94 (MQ=60)
ATGTTCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTC < SRR4302535.2268239/94‑1 (MQ=60)
ATGTTCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTC > SRR4302535.1267414/1‑94 (MQ=60)
TTCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATC < SRR4302535.2475209/94‑1 (MQ=60)
TCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCA < SRR4302535.2875825/94‑1 (MQ=60)
CGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAA < SRR4302535.1497103/94‑1 (MQ=60)
CGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGATGTATTTCCGTTCTGCTGGCACGTTGCTCATCAA > SRR4302535.4023005/1‑94 (MQ=60)
GGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAAT < SRR4302535.3679673/94‑1 (MQ=60)
GGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAAT < SRR4302535.2674352/94‑1 (MQ=60)
GGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAAT > SRR4302535.4305538/1‑94 (MQ=60)
GGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAAT < SRR4302535.1413532/94‑1 (MQ=60)
TAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCA > SRR4302535.3103227/1‑94 (MQ=60)
AATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAA > SRR4302535.2903336/1‑94 (MQ=60)
ATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAAT < SRR4302535.1157890/94‑1 (MQ=60)
ATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAAT < SRR4302535.3220214/94‑1 (MQ=60)
ATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAAT > SRR4302535.1222680/1‑94 (MQ=60)
ATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATAAATCAAT > SRR4302535.2423033/1‑94 (MQ=60)
TACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATC > SRR4302535.814301/1‑94 (MQ=60)
ACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCT > SRR4302535.3946786/1‑94 (MQ=60)
CCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTC > SRR4302535.209671/1‑94 (MQ=60)
CAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCC > SRR4302535.1497489/1‑94 (MQ=60)
CAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCC > SRR4302535.182187/1‑94 (MQ=60)
CAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCC > SRR4302535.4106726/1‑94 (MQ=60)
AACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCA < SRR4302535.1486973/94‑1 (MQ=60)
CGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTacaca > SRR4302535.1182799/1‑89 (MQ=60)
CGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAA > SRR4302535.3200979/1‑94 (MQ=60)
GGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAA > SRR4302535.2844364/1‑94 (MQ=60)
GTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAA > SRR4302535.3500444/1‑94 (MQ=60)
TGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAA > SRR4302535.2191843/1‑94 (MQ=60)
GTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAG > SRR4302535.39049/1‑94 (MQ=60)
TAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGT < SRR4302535.2684771/94‑1 (MQ=60)
AAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTA > SRR4302535.3023967/1‑94 (MQ=60)
AGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAA > SRR4302535.1329931/1‑94 (MQ=60)
AGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAA > SRR4302535.1287232/1‑94 (MQ=60)
AGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAA > SRR4302535.3708604/1‑94 (MQ=60)
AGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAA > SRR4302535.2870093/1‑94 (MQ=60)
GTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAA < SRR4302535.3120602/94‑1 (MQ=60)
GTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAA < SRR4302535.4314516/94‑1 (MQ=60)
TGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAAT < SRR4302535.4411022/94‑1 (MQ=60)
TGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAAT > SRR4302535.1576094/1‑94 (MQ=60)
TGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAAT < SRR4302535.4683741/94‑1 (MQ=60)
TGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAAT < SRR4302535.4019210/94‑1 (MQ=60)
GGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGGATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAAT < SRR4302535.1859912/94‑1 (MQ=60)
GCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATC < SRR4302535.1854234/94‑1 (MQ=60)
CCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCA < SRR4302535.2683642/94‑1 (MQ=60)
CCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCA < SRR4302535.3290858/94‑1 (MQ=60)
CGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCAC < SRR4302535.2862216/94‑1 (MQ=60)
CGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCAC > SRR4302535.2827031/1‑94 (MQ=60)
CGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCAC < SRR4302535.4081578/94‑1 (MQ=60)
GTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACG > SRR4302535.3985032/1‑94 (MQ=60)
GTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACG > SRR4302535.2777359/1‑94 (MQ=60)
GTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACG > SRR4302535.3704831/1‑94 (MQ=60)
CGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCG > SRR4302535.2923363/1‑94 (MQ=60)
CTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACG > SRR4302535.3181559/1‑94 (MQ=60)
TTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGG > SRR4302535.2100148/1‑94 (MQ=60)
TTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGG < SRR4302535.4625819/94‑1 (MQ=60)
CTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCT < SRR4302535.272726/94‑1 (MQ=60)
CTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCT > SRR4302535.4409696/1‑94 (MQ=60)
CTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCT > SRR4302535.4596524/1‑94 (MQ=60)
CTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCT > SRR4302535.4642081/1‑94 (MQ=60)
TTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTT < SRR4302535.3670085/94‑1 (MQ=60)
TTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTT > SRR4302535.979199/1‑94 (MQ=60)
TTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTT < SRR4302535.2786402/94‑1 (MQ=60)
ACGCAGCCATTCGTGTTCTTTGCTGTGTTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGC > SRR4302535.3014099/1‑94 (MQ=60)
GCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCG < SRR4302535.191162/94‑1 (MQ=60)
GCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCG > SRR4302535.4229791/1‑94 (MQ=60)
GCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCG > SRR4302535.1307530/1‑94 (MQ=60)
CAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGT > SRR4302535.436123/1‑94 (MQ=60)
CCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCACTCAATCTCCAACAAAGTAAATCACGCGACGGCTTTGCAGTTAC > SRR4302535.160249/1‑94 (MQ=60)
CCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTAC < SRR4302535.1016495/94‑1 (MQ=60)
CCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTAC < SRR4302535.3912186/94‑1 (MQ=60)
CCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGAGACGGCTTTGCCGTTAC > SRR4302535.1023133/1‑94 (MQ=60)
CATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGTCGTTACG > SRR4302535.4241334/1‑94 (MQ=60)
CATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACG < SRR4302535.1361547/94‑1 (MQ=60)
ATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGC > SRR4302535.1170536/1‑94 (MQ=60)
TCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCAC > SRR4302535.3346878/1‑94 (MQ=60)
CGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACA > SRR4302535.1806279/1‑94 (MQ=60)
CGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACA > SRR4302535.1870337/1‑94 (MQ=60)
GTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAA > SRR4302535.1304675/1‑94 (MQ=60)
TTCTTTGCTGTATTTCAGTTCTGCTGGTACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAA > SRR4302535.2958340/1‑94 (MQ=60)
TTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAA > SRR4302535.707939/1‑94 (MQ=60)
TCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAAC < SRR4302535.3661305/94‑1 (MQ=60)
CTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACA < SRR4302535.3205148/94‑1 (MQ=60)
CTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACA > SRR4302535.1223426/1‑94 (MQ=60)
CTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACA > SRR4302535.4594774/1‑94 (MQ=60)
TTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAG < SRR4302535.2340392/94‑1 (MQ=60)
TTTGCTGTATTTCAGTTCTGCGGGCACGTTGCTCATCAATCAATCTCCAAAAACGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAG < SRR4302535.3240791/94‑1 (MQ=60)
TTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGG < SRR4302535.278613/94‑1 (MQ=60)
TTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGG > SRR4302535.2839464/1‑94 (MQ=60)
TTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGG < SRR4302535.2084174/94‑1 (MQ=60)
TTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGG > SRR4302535.1219224/1‑94 (MQ=60)
TGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGT < SRR4302535.4475688/94‑1 (MQ=60)
TGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGT < SRR4302535.2357075/94‑1 (MQ=60)
GCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTT < SRR4302535.2790081/94‑1 (MQ=60)
CTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAACAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGATT > SRR4302535.3555751/1‑94 (MQ=60)
CTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTT > SRR4302535.3813287/1‑94 (MQ=60)
CTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTT > SRR4302535.1162555/1‑94 (MQ=60)
CTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTT > SRR4302535.4646600/1‑94 (MQ=60)
CTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTT < SRR4302535.3606899/94‑1 (MQ=60)
TGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTT > SRR4302535.3812036/1‑94 (MQ=60)
TGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTT > SRR4302535.2466807/1‑94 (MQ=60)
GTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAACAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTG > SRR4302535.860031/1‑94 (MQ=60)
TATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGT > SRR4302535.4639099/1‑94 (MQ=60)
TATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGT < SRR4302535.2029082/94‑1 (MQ=60)
TATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGT > SRR4302535.2666809/1‑94 (MQ=60)
ATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTC > SRR4302535.2880/1‑94 (MQ=60)
ATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTC > SRR4302535.4701193/1‑94 (MQ=60)
ATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTC > SRR4302535.2208764/1‑94 (MQ=60)
ATTTCAGTTCAGCTGGCACGTTGCTCGTCAATCAATCACCAACAAAGTACATCACGCGACGGCTAAGCCGTTCCGCACAAAAACAGGTTTTGTC < SRR4302535.4715293/94‑1 (MQ=53)
TTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCA < SRR4302535.230132/94‑1 (MQ=60)
TTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCA > SRR4302535.3688122/1‑94 (MQ=60)
TTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCA < SRR4302535.2263483/94‑1 (MQ=60)
TTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCA > SRR4302535.3760382/1‑94 (MQ=60)
TTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCA < SRR4302535.282503/94‑1 (MQ=60)
TTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATTACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCAC < SRR4302535.2536922/94‑1 (MQ=60)
TTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCAC > SRR4302535.2567487/1‑94 (MQ=60)
TCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCACT < SRR4302535.1926878/94‑1 (MQ=60)
CAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCACTT > SRR4302535.2351746/1‑94 (MQ=60)
AGTTCTGCTTGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCACTTT < SRR4302535.3959077/94‑1 (MQ=60)
AGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCACTTT > SRR4302535.1148229/1‑94 (MQ=60)
AGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCACTTT > SRR4302535.1810345/1‑94 (MQ=60)
AGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCACTTT < SRR4302535.1139140/94‑1 (MQ=60)
AGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCACTTT < SRR4302535.1310294/94‑1 (MQ=60)
GTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCACTTTA > SRR4302535.4405001/1‑94 (MQ=60)
TCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCACTTTAAC < SRR4302535.4550803/94‑1 (MQ=60)
CTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCACTTTAACC < SRR4302535.946289/94‑1 (MQ=60)
TGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCACTTTAACCGGCA < SRR4302535.3750403/94‑1 (MQ=60)
TGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCACTTTAACCGGCA > SRR4302535.4686799/1‑94 (MQ=60)
TGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCACTTTAACCGGCA > SRR4302535.1582969/1‑94 (MQ=60)
TGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCACTTTAACCGGCA < SRR4302535.429481/94‑1 (MQ=60)
GGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCACTTTAACCGGCAT > SRR4302535.3671078/1‑94 (MQ=60)
|
CTCCTGAGCATGTTCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGTACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCACTTTAACCGGCAT > NC_000913/3047465‑3047649
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
