Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1696 279.3 15874187 97.8% 15524954 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,047,558 T→C V4V (GTA→GTG gcvH ← GcvH

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,047,5580TC99.7% 1151.0 / NA 366V4V (GTA→GTGgcvHGcvH
Reads supporting (aligned to +/- strand):  ref base T (0/1);  new base C (204/160);  total (204/162)
Fisher's exact test for biased strand distribution p-value = 4.41e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 371 total aligned reads displayed.

CTGAGCATGTTCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGTACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCACTTTAACCGGC  >  NC_000913/3047468‑3047647
                                                                                          |                                                                                         
cTGAGCATGTTCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCAc                                                                                         >  2:4054106/1‑93 (MQ=255)
   aGCATGTTCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGtt                                                                                      <  2:5862387/93‑1 (MQ=255)
   aGCATGTTCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGtt                                                                                      <  2:3097114/93‑1 (MQ=255)
    gCATGTTCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGAATTTCAGTTCTGCTGGCACGTTg                                                                                     >  2:5662441/1‑93 (MQ=255)
     cATGTTCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGc                                                                                    >  2:2528982/1‑93 (MQ=255)
       tGTTCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCtc                                                                                  >  1:2414992/1‑93 (MQ=255)
       tGTTCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCtc                                                                                  >  1:4793118/1‑93 (MQ=255)
        tttCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCtca                                                                                 <  1:77500/92‑1 (MQ=255)
        gTTCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCtca                                                                                 >  1:4166171/1‑93 (MQ=255)
        gTTCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCtca                                                                                 <  2:7202372/93‑1 (MQ=255)
         ttCCGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCtcat                                                                                <  1:5986686/93‑1 (MQ=255)
          tCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCtcatc                                                                               <  1:2095200/93‑1 (MQ=255)
          tCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCtcatc                                                                               <  1:6176776/93‑1 (MQ=255)
           cGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCtcatca                                                                              >  1:324710/1‑93 (MQ=255)
            ggTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCatcaa                                                                             >  1:6761043/1‑93 (MQ=255)
             gTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCatcaat                                                                            >  2:4246982/1‑93 (MQ=255)
             gTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCatcaat                                                                            >  2:777542/1‑93 (MQ=255)
              tAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCatcaatc                                                                           <  2:3015511/93‑1 (MQ=255)
                 tACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTTGCACGTTGTTCCTccattaat                                                                        >  2:1454264/1‑93 (MQ=255)
                 tACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATcaatcaat                                                                        >  2:7887861/1‑93 (MQ=255)
                 tACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATcaatcaat                                                                        <  1:1753187/93‑1 (MQ=255)
                 tACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATcaatcaat                                                                        >  1:2246700/1‑93 (MQ=255)
                 tACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATcaatcaat                                                                        <  2:5235634/93‑1 (MQ=255)
                  aCCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCaatcaatc                                                                       <  2:1932493/93‑1 (MQ=255)
                    cAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAAtctc                                                                     >  2:2129177/1‑93 (MQ=255)
                     aaCGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTcc                                                                    >  1:5079800/1‑93 (MQ=255)
                       cGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCaa                                                                  <  1:5265631/93‑1 (MQ=255)
                         gtgtAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCaaaa                                                                >  1:6307048/1‑93 (MQ=255)
                          tgtAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCaaaaa                                                               >  1:53176/1‑93 (MQ=255)
                             aaGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGt                                                            >  1:4861962/1‑93 (MQ=255)
                               gTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTaa                                                          <  2:6647701/93‑1 (MQ=255)
                                tGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTaaa                                                         <  1:2775451/93‑1 (MQ=255)
                                 gCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAAt                                                        >  1:3960588/1‑93 (MQ=255)
                                  ccGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATc                                                       >  2:2750017/1‑93 (MQ=255)
                                  ccGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATc                                                       >  1:7076404/1‑93 (MQ=255)
                                   cGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCa                                                      <  2:3837511/93‑1 (MQ=255)
                                     ttggCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCAcg                                                    >  2:4903400/3‑93 (MQ=255)
                                     tCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCAcg                                                    >  1:6623988/1‑93 (MQ=255)
                                      cGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCAcgc                                                   >  2:6364307/1‑93 (MQ=255)
                                      cGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCAcgc                                                   <  1:1817620/93‑1 (MQ=255)
                                      cGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCAcgc                                                   <  2:2792688/93‑1 (MQ=255)
                                      cGGCTTCTTTACGCAGCCATTCGTGTTATTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCAcgc                                                   >  2:646049/1‑93 (MQ=255)
                                       ggCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCAcgcg                                                  >  1:4663898/1‑93 (MQ=255)
                                         cttcttTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGAc                                                >  2:7148722/1‑93 (MQ=255)
                                         cttcttTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGAc                                                <  1:589231/93‑1 (MQ=255)
                                          ttcttTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACg                                               >  2:3695760/1‑93 (MQ=255)
                                          ttcttTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACg                                               >  2:3940080/1‑93 (MQ=255)
                                          ttcttTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACg                                               >  1:5479312/1‑93 (MQ=255)
                                           tcttTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACgg                                              >  2:1000203/1‑93 (MQ=255)
                                           tcttTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACgg                                              >  1:388261/1‑93 (MQ=255)
                                              ttACGCAGCCATTCGTGTCCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCtt                                           <  2:1354288/93‑1 (MQ=255)
                                                aCGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTg                                         >  1:1197810/1‑93 (MQ=255)
                                                aCGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTg                                         >  1:4980761/1‑93 (MQ=255)
                                                aCGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTg                                         <  2:2950394/93‑1 (MQ=255)
                                                 cGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGc                                        <  2:511949/93‑1 (MQ=255)
                                                   cAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCg                                      <  2:4720086/93‑1 (MQ=255)
                                                    aGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGt                                     <  2:5461859/93‑1 (MQ=255)
                                                     gCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTTGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGtt                                    >  1:1385510/1‑93 (MQ=255)
                                                     gCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGtt                                    <  2:114249/93‑1 (MQ=255)
                                                      ccATTCGTGTTCCTTGCTGTATTTCAGTTCTGCTGGCACAGTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGTCTTTGCCGTTa                                   >  2:556263/1‑93 (MQ=255)
                                                       cATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTAc                                  <  1:3700133/93‑1 (MQ=255)
                                                       cATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTAc                                  <  2:6221287/93‑1 (MQ=255)
                                                       cATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTAc                                  >  2:2655114/1‑93 (MQ=255)
                                                         ttCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGc                                >  1:7451303/1‑93 (MQ=255)
                                                         ttCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGc                                >  2:5756985/1‑93 (MQ=255)
                                                          tCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGca                               >  1:1962148/1‑93 (MQ=255)
                                                          tCGTGTTCTTTGCTGTATTTCAGGTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGca                               <  2:4282357/93‑1 (MQ=255)
                                                            gtgtTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGcaca                             >  1:7593216/1‑93 (MQ=255)
                                                            gtgtTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGcaca                             >  1:4090143/1‑93 (MQ=255)
                                                              gtTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACaaa                           >  1:6588063/1‑93 (MQ=255)
                                                              gtTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACaaa                           <  1:2967901/93‑1 (MQ=255)
                                                               ttCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACaaaa                          >  2:1979966/1‑93 (MQ=255)
                                                               ttCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACaaaa                          >  2:1397111/1‑93 (MQ=255)
                                                                  tttGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACa                       <  1:1032035/93‑1 (MQ=255)
                                                                     gCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGt                    <  1:45307/93‑1 (MQ=255)
                                                                     gCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGt                    <  1:3598848/93‑1 (MQ=255)
                                                                        gTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGtttt                 >  2:7479853/1‑93 (MQ=255)
                                                                         tATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTg                >  2:2436581/1‑93 (MQ=255)
                                                                         tATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTg                >  2:6744249/1‑93 (MQ=255)
                                                                           tttCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTc              >  1:7626406/1‑93 (MQ=255)
                                                                           tttCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGATTTGCCGTTACGCACAAAAACAGGTTTTGTc              >  1:791695/1‑93 (MQ=255)
                                                                            ttCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCa             >  1:5201401/1‑93 (MQ=255)
                                                                             tCAGTTCTGCTGGTACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCAc            <  2:3271245/93‑1 (MQ=255)
                                                                             tCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCAc            <  2:260976/93‑1 (MQ=255)
                                                                               aGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCACtt          >  2:6098336/1‑93 (MQ=255)
                                                                                gTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCACttt         >  2:6825630/1‑93 (MQ=255)
                                                                                  tCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCACTTTaa       >  2:4620066/1‑93 (MQ=255)
                                                                                  tCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCACTTTaa       <  2:4398622/93‑1 (MQ=255)
                                                                                   ctgctgGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAATACAGGTTTTGTCACTTTAAc      <  2:7613951/93‑1 (MQ=255)
                                                                                   ctgctgGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCACTTTAAc      >  1:4325918/1‑93 (MQ=255)
                                                                                   ctgctgGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCACTTTAAc      >  1:3423586/1‑93 (MQ=255)
                                                                                   ctgctgGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCACTTTAAc      <  2:5309307/93‑1 (MQ=255)
                                                                                   ctgctgGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCACTTTAAc      <  1:5397995/93‑1 (MQ=255)
                                                                                    tgctgGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCACTTTAAcc     >  2:3343086/1‑93 (MQ=255)
                                                                                    tgctgGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCACTTTAAcc     >  1:6105261/1‑93 (MQ=255)
                                                                                    tgctgGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCACTTTAAcc     >  1:7837173/1‑93 (MQ=255)
                                                                                     gctgGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCACTTTAACCg    <  1:6910207/93‑1 (MQ=255)
                                                                                     gctgGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCACTTTAACCg    <  2:7366194/93‑1 (MQ=255)
                                                                                      ctgGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCACTTTAACCgg   <  1:5822557/93‑1 (MQ=255)
                                                                                       tgGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCACTTTAACCGGc  <  2:1723763/93‑1 (MQ=255)
                                                                                          |                                                                                         
CTGAGCATGTTCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGTACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCACTTTAACCGGC  >  NC_000913/3047468‑3047647

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CTCCTGAGCATGTTCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGTACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCACTTTAACCGGCATTT  >  NC_000913/3047465‑3047651
                                                                                             |                                                                                             
CTCCTGAGCATGTTCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGC                                                                                               <  SRR4302543.633047/94‑1 (MQ=60)
CTCCTGAGCATGTTCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGC                                                                                               >  SRR4302543.4400055/1‑94 (MQ=60)
CTCCTGAGCATGTTCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGC                                                                                               <  SRR4302543.4138622/94‑1 (MQ=60)
 TCCTGAGCATGTTCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCA                                                                                              >  SRR4302543.3179323/1‑94 (MQ=60)
 TCCTGAGCATGTTCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCA                                                                                              <  SRR4302543.1525103/94‑1 (MQ=60)
  CCTGAGCATGTTCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGTTGGCAC                                                                                             >  SRR4302543.6093168/1‑94 (MQ=60)
   CTGAGCATGTTCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACG                                                                                            >  SRR4302543.6577452/1‑94 (MQ=60)
   CTGAGCATGTTCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACG                                                                                            >  SRR4302543.796847/1‑94 (MQ=60)
   CTGAGCATGTTCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACG                                                                                            >  SRR4302543.5132232/1‑94 (MQ=60)
    TGAGCATGTTCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGT                                                                                           >  SRR4302543.4566622/1‑94 (MQ=60)
    TGAGCATGTTCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGT                                                                                           >  SRR4302543.7831511/1‑94 (MQ=60)
    TGAGCATGTTCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGT                                                                                           >  SRR4302543.7884916/1‑94 (MQ=60)
     GAGCATGTTCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTT                                                                                          <  SRR4302543.1536802/94‑1 (MQ=60)
      AGCATGTTCGGTAATACCAACGGTGTAAGTTCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTG                                                                                         <  SRR4302543.7685563/94‑1 (MQ=60)
      AGCATGTTCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTG                                                                                         >  SRR4302543.1329768/1‑94 (MQ=60)
      AGCATGTTCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTG                                                                                         <  SRR4302543.1085308/94‑1 (MQ=60)
        CATGTTCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCT                                                                                       <  SRR4302543.4192772/94‑1 (MQ=60)
        CATGTTCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCT                                                                                       >  SRR4302543.4255124/1‑94 (MQ=60)
         ATGTTCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTC                                                                                      >  SRR4302543.2436815/1‑94 (MQ=60)
         ATGTTCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTC                                                                                      >  SRR4302543.7667009/1‑94 (MQ=60)
         ATGTTCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTC                                                                                      >  SRR4302543.5162989/1‑94 (MQ=60)
         ATGTTCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTC                                                                                      >  SRR4302543.4836929/1‑94 (MQ=60)
          TGTTCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCA                                                                                     <  SRR4302543.4978234/94‑1 (MQ=60)
          TGTTCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCA                                                                                     >  SRR4302543.4203893/1‑94 (MQ=60)
           TTTCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCAT                                                                                    <  SRR4302543.78221/94‑1 (MQ=60)
            TTCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATC                                                                                   >  SRR4302543.1452541/1‑94 (MQ=60)
            TTCCGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATC                                                                                   <  SRR4302543.6041545/94‑1 (MQ=60)
             TCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCA                                                                                  <  SRR4302543.5652017/94‑1 (MQ=60)
             TCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCA                                                                                  >  SRR4302543.327652/1‑94 (MQ=60)
             TCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCA                                                                                  <  SRR4302543.2113922/94‑1 (MQ=60)
             TCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCA                                                                                  <  SRR4302543.6235176/94‑1 (MQ=60)
              CGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAA                                                                                 >  SRR4302543.6824898/1‑94 (MQ=60)
               GGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAAT                                                                                <  SRR4302543.6031470/94‑1 (MQ=60)
               GGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAAT                                                                                <  SRR4302543.549209/94‑1 (MQ=60)
                 TAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCA                                                                              <  SRR4302543.3542827/94‑1 (MQ=60)
                 TAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCA                                                                              <  SRR4302543.7763342/94‑1 (MQ=60)
                 TAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCA                                                                              <  SRR4302543.625848/94‑1 (MQ=60)
                   ATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAAT                                                                            >  SRR4302543.925789/1‑94 (MQ=60)
                   ATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAAT                                                                            <  SRR4302543.2412311/94‑1 (MQ=60)
                   ATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAAT                                                                            >  SRR4302543.2267093/1‑94 (MQ=60)
                    TACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATC                                                                           <  SRR4302543.1768848/94‑1 (MQ=60)
                    TACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATC                                                                           >  SRR4302543.4626119/1‑94 (MQ=60)
                     ACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCT                                                                          >  SRR4302543.4239207/1‑94 (MQ=60)
                     ACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCT                                                                          >  SRR4302543.1305046/1‑94 (MQ=60)
                     ACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCT                                                                          <  SRR4302543.6947834/94‑1 (MQ=60)
                      CCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTC                                                                         >  SRR4302543.5323692/1‑94 (MQ=60)
                      CCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTC                                                                         >  SRR4302543.4834883/1‑94 (MQ=60)
                       CAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCC                                                                        >  SRR4302543.5125877/1‑94 (MQ=60)
                        AACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCA                                                                       >  SRR4302543.1620592/1‑94 (MQ=60)
                          CGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCATTTCTGCTGGGACGTGGCGCATCAATCAATCTCCACA                                                                     >  SRR4302543.5889928/1‑94 (MQ=60)
                          CGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAA                                                                     <  SRR4302543.5313135/94‑1 (MQ=60)
                          CGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAA                                                                     <  SRR4302543.5313136/94‑1 (MQ=60)
                          CGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAA                                                                     >  SRR4302543.5889927/1‑94 (MQ=60)
                          CGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAA                                                                     <  SRR4302543.3797421/94‑1 (MQ=60)
                           GGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAA                                                                    >  SRR4302543.5032889/1‑94 (MQ=60)
                           GGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAA                                                                    >  SRR4302543.6366371/1‑94 (MQ=60)
                            GTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAA                                                                   >  SRR4302543.53646/1‑94 (MQ=60)
                            GTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAA                                                                   >  SRR4302543.5078809/1‑94 (MQ=60)
                             TGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAA                                                                  >  SRR4302543.7543397/1‑94 (MQ=60)
                              GTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAG                                                                 <  SRR4302543.5385120/94‑1 (MQ=60)
                               TAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGT                                                                >  SRR4302543.4906290/1‑94 (MQ=60)
                                 AGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAA                                                              <  SRR4302543.3985975/94‑1 (MQ=60)
                                 AGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAA                                                              >  SRR4302543.476463/1‑94 (MQ=60)
                                 AGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAA                                                              <  SRR4302543.1855335/94‑1 (MQ=60)
                                  GTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAA                                                             <  SRR4302543.2318566/94‑1 (MQ=60)
                                  GTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAA                                                             <  SRR4302543.2319440/94‑1 (MQ=60)
                                   TGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAAT                                                            <  SRR4302543.2800722/94‑1 (MQ=60)
                                   TGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAAT                                                            >  SRR4302543.3995662/1‑94 (MQ=60)
                                   TGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAAT                                                            <  SRR4302543.5916437/94‑1 (MQ=60)
                                    GCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATC                                                           <  SRR4302543.473508/94‑1 (MQ=60)
                                    GCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATC                                                           >  SRR4302543.7145118/1‑94 (MQ=60)
                                     CCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCA                                                          >  SRR4302543.2846181/1‑94 (MQ=60)
                                      CGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCCC                                                         <  SRR4302543.6300384/94‑1 (MQ=60)
                                      CGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCAC                                                         <  SRR4302543.4021904/94‑1 (MQ=60)
                                      CGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCAC                                                         <  SRR4302543.4869784/94‑1 (MQ=60)
                                      CGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCAC                                                         >  SRR4302543.861909/1‑94 (MQ=60)
                                       GTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCCATCTCCAAAAAAGTAAATCACG                                                        >  SRR4302543.6686458/1‑94 (MQ=60)
                                       GTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAACAAGTAAATCACG                                                        >  SRR4302543.6686453/1‑94 (MQ=60)
                                       GTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACG                                                        >  SRR4302543.6686459/1‑94 (MQ=60)
                                       GTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACG                                                        >  SRR4302543.3483191/1‑94 (MQ=60)
                                        TCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGC                                                       <  SRR4302543.3836800/94‑1 (MQ=60)
                                         CGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCG                                                      <  SRR4302543.6216047/94‑1 (MQ=60)
                                         CGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCG                                                      >  SRR4302543.4706399/1‑94 (MQ=60)
                                         CGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCG                                                      >  SRR4302543.3552682/1‑94 (MQ=60)
                                         CGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCG                                                      >  SRR4302543.5987482/1‑94 (MQ=60)
                                         CGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCG                                                      <  SRR4302543.1833921/94‑1 (MQ=60)
                                          GGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGA                                                     >  SRR4302543.6173245/1‑94 (MQ=60)
                                          GGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGA                                                     >  SRR4302543.6133048/1‑94 (MQ=60)
                                           GCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGAC                                                    >  SRR4302543.2661037/1‑94 (MQ=60)
                                           GCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGAC                                                    >  SRR4302543.4139734/1‑94 (MQ=60)
                                           GCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGAC                                                    <  SRR4302543.4113022/94‑1 (MQ=60)
                                            CTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACG                                                   >  SRR4302543.5528969/1‑94 (MQ=60)
                                            CTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACG                                                   <  SRR4302543.594620/94‑1 (MQ=60)
                                            CTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACG                                                   >  SRR4302543.4274757/1‑94 (MQ=60)
                                            CTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACG                                                   >  SRR4302543.840699/1‑94 (MQ=60)
                                            CTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACG                                                   >  SRR4302543.1926851/1‑94 (MQ=60)
                                             TTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCACAACAGTAAATCACGCcgcgg                                                  >  SRR4302543.391854/1‑89 (MQ=60)
                                             TTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGG                                                  >  SRR4302543.391853/1‑94 (MQ=60)
                                              TCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACATTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGC                                                 <  SRR4302543.3360411/94‑1 (MQ=60)
                                               CTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCT                                                <  SRR4302543.7342650/94‑1 (MQ=60)
                                               CTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCT                                                >  SRR4302543.2212034/1‑94 (MQ=60)
                                                 TTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTT                                              <  SRR4302543.5535790/94‑1 (MQ=60)
                                                 TTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTT                                              <  SRR4302543.7809522/94‑1 (MQ=60)
                                                  TACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTG                                             >  SRR4302543.5026099/1‑94 (MQ=60)
                                                  TACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTG                                             <  SRR4302543.6710575/94‑1 (MQ=60)
                                                  TACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTG                                             >  SRR4302543.1208595/1‑94 (MQ=60)
                                                   ACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGC                                            >  SRR4302543.5256089/1‑94 (MQ=60)
                                                    CGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCC                                           >  SRR4302543.2643555/1‑94 (MQ=60)
                                                     GCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCG                                          <  SRR4302543.3717281/94‑1 (MQ=60)
                                                     GCAGCCATTCGTGTTCTTTGCGGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCCCGCGACGGCTTTGCCG                                          <  SRR4302543.3441950/94‑1 (MQ=60)
                                                       AGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTTGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTT                                        >  SRR4302543.1397977/1‑94 (MQ=60)
                                                       AGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTT                                        >  SRR4302543.3937860/1‑94 (MQ=60)
                                                       AGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTT                                        >  SRR4302543.6507584/1‑94 (MQ=60)
                                                       AGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTT                                        >  SRR4302543.1822644/1‑94 (MQ=60)
                                                       AGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTT                                        >  SRR4302543.6119743/1‑94 (MQ=60)
                                                         CCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTAC                                      >  SRR4302543.6749385/1‑94 (MQ=60)
                                                          CATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAGAAGTAAATCACGCGACGGCTTTGCCGTTACG                                     <  SRR4302543.7484762/94‑1 (MQ=60)
                                                          CATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACG                                     <  SRR4302543.7585404/94‑1 (MQ=60)
                                                          CATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACG                                     <  SRR4302543.1813808/94‑1 (MQ=60)
                                                          CATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACG                                     <  SRR4302543.3732661/94‑1 (MQ=60)
                                                          CATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACG                                     >  SRR4302543.4670402/1‑94 (MQ=60)
                                                           ATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGC                                    >  SRR4302543.6329090/1‑94 (MQ=60)
                                                           ATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGC                                    <  SRR4302543.5337060/94‑1 (MQ=60)
                                                           ATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGC                                    >  SRR4302543.7522705/1‑94 (MQ=60)
                                                            TTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCA                                   >  SRR4302543.1979748/1‑94 (MQ=60)
                                                              CGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACA                                 >  SRR4302543.7665356/1‑94 (MQ=60)
                                                              CGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACA                                 >  SRR4302543.5408719/1‑94 (MQ=60)
                                                              CGTGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACA                                 >  SRR4302543.4126830/1‑94 (MQ=60)
                                                                TGTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAA                               >  SRR4302543.6650126/1‑94 (MQ=60)
                                                                 GTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAACAGTAAATCACGCGACGGCTTGGCCGGTACGCACAAAA                              >  SRR4302543.4384647/1‑94 (MQ=60)
                                                                 GTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAA                              <  SRR4302543.2994853/94‑1 (MQ=60)
                                                                 GTTCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAA                              >  SRR4302543.1232466/1‑94 (MQ=60)
                                                                   TCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAAC                            <  SRR4302543.4471696/94‑1 (MQ=60)
                                                                   TCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAAC                            <  SRR4302543.286480/94‑1 (MQ=60)
                                                                   TCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAAC                            <  SRR4302543.3260800/94‑1 (MQ=60)
                                                                   TCTTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAAC                            >  SRR4302543.6989270/1‑94 (MQ=60)
                                                                     TTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGTTTTGCCGCTACGCACAAAAACAG                          >  SRR4302543.7094543/1‑94 (MQ=60)
                                                                     TTTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAG                          <  SRR4302543.1041199/94‑1 (MQ=60)
                                                                      TTGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGG                         <  SRR4302543.4849481/94‑1 (MQ=60)
                                                                       TGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAATTCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGT                        >  SRR4302543.6874237/1‑94 (MQ=60)
                                                                       TGCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGT                        <  SRR4302543.5517240/94‑1 (MQ=60)
                                                                        GCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTT                       >  SRR4302543.3990969/1‑94 (MQ=60)
                                                                        GCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTT                       <  SRR4302543.3630606/94‑1 (MQ=60)
                                                                        GCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTT                       <  SRR4302543.45719/94‑1 (MQ=60)
                                                                        GCTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTT                       >  SRR4302543.7688977/1‑94 (MQ=60)
                                                                         CTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTT                      >  SRR4302543.587141/1‑94 (MQ=60)
                                                                         CTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTT                      >  SRR4302543.5479933/1‑94 (MQ=60)
                                                                         CTGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTT                      >  SRR4302543.7583519/1‑94 (MQ=60)
                                                                          TGTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTT                     >  SRR4302543.3643001/1‑94 (MQ=60)
                                                                           GTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTG                    <  SRR4302543.4953540/94‑1 (MQ=60)
                                                                           GTATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTG                    <  SRR4302543.4953539/94‑1 (MQ=60)
                                                                            TATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGT                   <  SRR4302543.332295/94‑1 (MQ=60)
                                                                            TATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGT                   <  SRR4302543.7926510/94‑1 (MQ=60)
                                                                            TATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGT                   >  SRR4302543.4108973/1‑94 (MQ=60)
                                                                             ATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTC                  >  SRR4302543.7698776/1‑94 (MQ=60)
                                                                             ATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTC                  <  SRR4302543.5290314/94‑1 (MQ=60)
                                                                             ATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTC                  >  SRR4302543.5379576/1‑94 (MQ=60)
                                                                             ATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTC                  >  SRR4302543.798653/1‑94 (MQ=60)
                                                                             ATTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGATTTGCCGTTACGCACAAAAACAGGTTTTGTC                  >  SRR4302543.798654/1‑94 (MQ=60)
                                                                              TTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCA                 >  SRR4302543.516721/1‑94 (MQ=60)
                                                                              TTTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCA                 >  SRR4302543.5248296/1‑94 (MQ=60)
                                                                               TTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCAC                <  SRR4302543.2036403/94‑1 (MQ=60)
                                                                               TTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCAC                >  SRR4302543.3028702/1‑94 (MQ=60)
                                                                               TTCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCAC                <  SRR4302543.1172040/94‑1 (MQ=60)
                                                                                TCAGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCACT               >  SRR4302543.6013324/1‑94 (MQ=60)
                                                                                  AGTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGATGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCACTTT             <  SRR4302543.706237/94‑1 (MQ=60)
                                                                                   GTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCACTTTA            >  SRR4302543.3742257/1‑94 (MQ=60)
                                                                                   GTTCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCACTTTA            >  SRR4302543.7877672/1‑94 (MQ=60)
                                                                                     TCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCACTTTAAC          >  SRR4302543.4365191/1‑94 (MQ=60)
                                                                                     TCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCACTTTAAC          >  SRR4302543.3454220/1‑94 (MQ=60)
                                                                                     TCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCACTTTAAC          >  SRR4302543.1845614/1‑94 (MQ=60)
                                                                                     TCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCACTTTAAC          <  SRR4302543.2123363/94‑1 (MQ=60)
                                                                                     TCTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCACTTTAAC          <  SRR4302543.2551993/94‑1 (MQ=60)
                                                                                      CTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCACTTTAACC         <  SRR4302543.5447086/94‑1 (MQ=60)
                                                                                      CTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCACTTTAACC         <  SRR4302543.6391252/94‑1 (MQ=60)
                                                                                      CTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCACTTTAACC         >  SRR4302543.7910937/1‑94 (MQ=60)
                                                                                      CTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCACTTTAACC         >  SRR4302543.1985443/1‑94 (MQ=60)
                                                                                      CTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCACTTTAACC         >  SRR4302543.6787932/1‑94 (MQ=60)
                                                                                      CTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCACTTTAACC         >  SRR4302543.691152/1‑94 (MQ=60)
                                                                                      CTGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCACTTTAACC         >  SRR4302543.6163103/1‑94 (MQ=60)
                                                                                       TGCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCACTTTAACCG        <  SRR4302543.4884416/94‑1 (MQ=60)
                                                                                        GCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCACTTTAACCGG       <  SRR4302543.2886710/94‑1 (MQ=60)
                                                                                        GCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCACTTTAACCGG       <  SRR4302543.6975153/94‑1 (MQ=60)
                                                                                        GCTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCACTTTAACCGG       >  SRR4302543.1982406/1‑94 (MQ=60)
                                                                                         CTGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCACTTTAACCGGC      <  SRR4302543.5875503/94‑1 (MQ=60)
                                                                                          TGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCACTTTAACCGGCA     >  SRR4302543.1037598/1‑94 (MQ=60)
                                                                                          TGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCACTTTAACCGGCA     >  SRR4302543.6401458/1‑94 (MQ=60)
                                                                                          TGGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCACTTTAACCGGCA     >  SRR4302543.2045940/1‑94 (MQ=60)
                                                                                           GGCACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCACTTTAACCGGCAT    <  SRR4302543.850453/94‑1 (MQ=60)
                                                                                             CACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCACTTTAACCGGCATTT  >  SRR4302543.4428820/1‑94 (MQ=60)
                                                                                             CACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCACTTTAACCGGCATTT  >  SRR4302543.3471853/1‑94 (MQ=60)
                                                                                             |                                                                                             
CTCCTGAGCATGTTCGGTAATACCAACGGTGTAAGTGCCGTCGGCTTCTTTACGCAGCCATTCGTGTTCTTTGCTGTATTTCAGTTCTGCTGGTACGTTGCTCATCAATCAATCTCCAAAAAAGTAAATCACGCGACGGCTTTGCCGTTACGCACAAAAACAGGTTTTGTCACTTTAACCGGCATTT  >  NC_000913/3047465‑3047651

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: