Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,075,220 |
(T)5→6 |
coding (256/357 nt) |
yggP ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,075,215 | 1 | . | T | 99.4%
| 648.5
/ ‑4.4
| 177 | coding (261/357 nt) | yggP | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base T (84/92); total (85/92) |
| Fisher's exact test for biased strand distribution p-value = 4.80e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 202 total aligned reads displayed.
ATAAGTGGCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCC‑TTTTTAT‑‑ATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTAAA > NC_000913/3075123‑3075302
|
taAGTGGCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCC‑t < 1:206328/93‑1 (MQ=255)
taAGTGGCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCC‑t > 2:2087635/1‑93 (MQ=255)
aaGTGGCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCC‑tt < 2:1760992/93‑1 (MQ=255)
gTGGCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCC‑tttt > 1:3600087/1‑93 (MQ=255)
tGGCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCC‑ttttt < 2:3954397/93‑1 (MQ=255)
tGGCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCC‑ttttt < 2:1497060/93‑1 (MQ=255)
ggCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCC‑tttttt < 2:637672/93‑2 (MQ=255)
gCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCC‑tttttta > 1:886087/1‑91 (MQ=255)
gCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCC‑tttttta > 1:2216530/1‑91 (MQ=255)
gCATCGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCC‑tttttta > 2:1929216/1‑91 (MQ=255)
aTTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCC‑ttttttata > 1:4061552/1‑89 (MQ=255)
gccAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTAT‑‑ATTTGcc > 1:974877/1‑93 (MQ=255)
gccAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTAT‑‑ATTTGcc < 1:744987/93‑1 (MQ=255)
gccAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTAT‑‑ATTTGcc > 2:427139/1‑93 (MQ=255)
gccAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTAT‑‑ATTTGcc < 1:3401920/93‑1 (MQ=255)
gccAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTAT‑‑ATTTGcc > 1:3017673/1‑93 (MQ=255)
ccAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCTATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTAT‑‑ATTTGCCa < 1:3041020/93‑1 (MQ=255)
caaaaaTATTGTTAGCTGTAGCCCGCTGAATCCCCGCTTGGAACCCCCATCCCGGTTTGAAATACAAAACGCGGGCCTTTTTTAT‑‑ATTTGCCa < 2:1257672/91‑1 (MQ=255)
aaaaTATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTAT‑‑ATTTGCCAGt < 1:1933150/93‑1 (MQ=255)
aaaaTATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTAT‑‑ATTTGCCAGt > 2:2061597/1‑93 (MQ=255)
aaaaTATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTAT‑‑ATTTGCCAGt < 2:4446828/93‑1 (MQ=255)
atTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGAt > 2:3471778/1‑93 (MQ=255)
ttCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGAtt > 2:3887135/1‑93 (MQ=255)
ttCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGAtt < 1:621022/93‑1 (MQ=255)
cGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGAtttt > 1:2141115/1‑93 (MQ=255)
gTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGAttttt > 1:1001595/1‑93 (MQ=255)
gTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGAttttt > 2:791547/1‑93 (MQ=255)
gTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGAttttt > 1:3481291/1‑93 (MQ=255)
tAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCTTCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGATTTTTa > 2:3586535/1‑93 (MQ=255)
tAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGATTTTTa > 2:4208731/1‑93 (MQ=255)
gCTGTAGCCCGCTGAATATCCGCTTAGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGATTTTTAcc < 1:178737/93‑1 (MQ=255)
cTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGATTTTTAccc > 2:2985088/1‑93 (MQ=255)
tGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGATTTTTACCCa < 2:2395953/93‑1 (MQ=255)
tAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGATTTTTACCCACt < 1:2638272/93‑1 (MQ=255)
gCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGATTTTTACCCACTTc < 2:4170776/93‑1 (MQ=255)
gCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGATTTTTACCCACTTc < 1:4584866/93‑1 (MQ=255)
gccGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGATTTTTACCCACTTCg < 2:1780907/92‑1 (MQ=255)
cccGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGATTTTTACCCACTTCg > 1:4405897/1‑93 (MQ=255)
ccGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGATTTTTACCCACTTCGa < 2:2579862/93‑1 (MQ=255)
cGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGATTTTTACCCACTTCGAc > 2:4110252/1‑93 (MQ=255)
cGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGATTTTTACCCACTTCGAc > 1:1709043/1‑93 (MQ=255)
gCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGATTTTTACCCACTTCGACa > 2:2683478/1‑93 (MQ=255)
cTGAATATCCGCTTGTTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGATTTTTACCCACTTCGACaa < 2:1088975/93‑1 (MQ=255)
tGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGATTTTTACCCACTTCGACAAt < 1:4101159/93‑1 (MQ=255)
aaTATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGATTTTTACCCACTTCGACAATaa < 1:4547280/93‑1 (MQ=255)
atatCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGATTTTTACCCACTTCGACAATAAc < 2:3375850/93‑1 (MQ=255)
atatCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGATTTTTACCCACTTCGACAATAAc < 1:1870269/93‑1 (MQ=255)
atatCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGATTTTTACCCACTTCGACAATAAc < 2:1662326/93‑1 (MQ=255)
tatCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGATTTTTACCCACTTCGACAATAAcc < 1:3608277/93‑1 (MQ=255)
atCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGATTTTTACCCACTTCGACAATAAccc > 1:4509109/1‑93 (MQ=255)
atCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGATTTTTACCCACTTCGACAATAAccc < 2:1451144/93‑1 (MQ=255)
cGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCgg < 2:3820239/93‑1 (MQ=255)
gCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGc < 1:1391687/93‑1 (MQ=255)
ttGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACACCGGcac > 2:1354930/1‑93 (MQ=255)
gTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACAtt < 1:3308353/93‑1 (MQ=255)
gTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACAtt < 1:2581091/93‑1 (MQ=255)
gTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACAtt < 1:506450/93‑1 (MQ=255)
aaCCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCa < 2:1996703/93‑1 (MQ=255)
aaCCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCa < 2:1631054/93‑1 (MQ=255)
aCCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCAt > 2:3537667/1‑93 (MQ=255)
ccccATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATg > 1:3930073/1‑93 (MQ=255)
ccATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGcc > 1:1635944/1‑93 (MQ=255)
ccATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGcc > 2:217407/1‑93 (MQ=255)
ccATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGcc > 2:250724/1‑93 (MQ=255)
cATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGccc > 1:1539134/1‑93 (MQ=255)
cATCGCCGGTTGCAATACAAAACGCTGGCC‑TTTTTTTTAATTTCCCGGTGAGTTTTTTA‑CCACCTCCACAATTACCCCCGCACCATCATGccc > 1:1053047/1‑93 (MQ=255)
aTCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCg > 1:1277775/1‑93 (MQ=255)
aTCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCg > 2:540709/1‑93 (MQ=255)
cGCCGGTTGCAATACAAAACGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGt < 1:844090/93‑1 (MQ=255)
cGCCGGTTGCAATACAAAACGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGt < 1:135277/93‑1 (MQ=255)
cGCCGGTTGCAATACAAAACGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGt < 1:4371595/93‑1 (MQ=255)
cGGTTGCAATACAAAACGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAAt > 2:3630023/1‑93 (MQ=255)
cGGTTGCAATACAAAACGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAAt > 1:415498/1‑93 (MQ=255)
cGGTTGCAATACAAAACGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGATTTTCACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAAt < 1:2513799/93‑1 (MQ=255)
ggTTGCAATACAAAACGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATg > 2:2969238/1‑93 (MQ=255)
cgTTGCGATACAAAACGCTGGCCTTTTTTAT‑‑GTTTGCCAGTGCGATTTTTACCCACTTCGACAATATCCCCGGCACATTCATGCCCGGTAATg < 2:4684760/92‑1 (MQ=255)
gTTGCAATACAAAACGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGa > 2:2906/1‑93 (MQ=255)
gTTGCAATACAAAACGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGa < 1:1222641/93‑1 (MQ=255)
gTTGAAATACAAACCGCTGGCCTTTTTTAT‑‑ATTTGCAAGTAAGTTTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGa < 2:2265050/93‑1 (MQ=255)
ttGCAATACAAAACGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGATTTTTACCCACTTCGACAATAGCCCCGGCACATTCATGCCCGGTAATGAc < 1:1443839/93‑1 (MQ=255)
ttGCAATACAAAACGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGAc > 1:3415897/1‑93 (MQ=255)
ttGCAATACAAAACGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGAc > 1:109639/1‑93 (MQ=255)
tGCAATACAAAACGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGAcc < 1:3497539/93‑1 (MQ=255)
gCAATACAAAACGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCg > 1:71258/1‑93 (MQ=255)
aaTACAAAACGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGga < 2:2351015/93‑1 (MQ=255)
aaTACAAAACGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGATTTTTACCCACTCCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGga > 1:998897/1‑93 (MQ=255)
aTACAAAACGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGATTTTTACCCACTTCGACAATACCCCCGGCACATTCATGCCCGGTAATGACCGgat < 1:2725531/93‑1 (MQ=255)
aTACAAAACGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGgat > 1:780159/1‑93 (MQ=255)
aCAAAACGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGgatga > 1:4322848/1‑93 (MQ=255)
aaaaCGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGAtt > 1:3747508/1‑93 (MQ=255)
aaaaCGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGAtt > 1:1454761/1‑93 (MQ=255)
aaaCGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGAttt < 2:1566345/93‑1 (MQ=255)
aaCGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATTAtttt > 2:3202468/1‑93 (MQ=255)
aaCGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGAtttt > 1:2670727/1‑93 (MQ=255)
aCGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGATTTTTACCCACTTCGACAATAGCCCCGGCACATTCATGCCCGGTAATGTCCGGATGATTTTc < 2:2299396/93‑1 (MQ=255)
cGCTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCt > 2:2779623/1‑93 (MQ=255)
cTGGCCTTTTTTAT‑‑ATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTaa < 2:1535512/93‑1 (MQ=255)
tGGCCTTTTTTAT‑‑ATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTaaa < 2:4067059/93‑1 (MQ=255)
tGGCCTTTTTTAT‑‑ATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTaaa > 1:2793667/1‑93 (MQ=255)
tGGCCTTTTTTAT‑‑ATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTaaa > 1:4639067/1‑93 (MQ=255)
|
ATAAGTGGCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCC‑TTTTTAT‑‑ATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTAAA > NC_000913/3075123‑3075302
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GGCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCC‑TTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTAAATCGTCGGGTAC > NC_000913/3075129‑3075313
|
GGCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCC‑TTTTTta > SRR4302535.892359/1‑92 (MQ=60)
GGCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCC‑TTTTTta > SRR4302535.2232311/1‑92 (MQ=60)
GCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCC‑TTTTT‑TAT > SRR4302535.786470/1‑94 (MQ=60)
CATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATA > SRR4302535.4089354/1‑94 (MQ=60)
CATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATA < SRR4302535.2146302/94‑1 (MQ=60)
ATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATAT > SRR4302535.1815203/1‑94 (MQ=60)
ATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATAT > SRR4302535.1806711/1‑94 (MQ=60)
TTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATT < SRR4302535.3604708/94‑1 (MQ=60)
CCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGC < SRR4302535.3048091/94‑1 (MQ=60)
CCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGC < SRR4302535.649006/94‑1 (MQ=60)
CGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCC > SRR4302535.4550779/1‑94 (MQ=60)
CGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCC > SRR4302535.3038813/1‑94 (MQ=60)
CGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCC > SRR4302535.981799/1‑94 (MQ=60)
GCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCA < SRR4302535.3425596/94‑1 (MQ=60)
GCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCA < SRR4302535.750220/94‑1 (MQ=60)
CCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCTATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAG < SRR4302535.3062322/94‑1 (MQ=60)
CCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAG < SRR4302535.1479855/94‑1 (MQ=60)
CCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAG > SRR4302535.4337142/1‑94 (MQ=60)
CAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGT < SRR4302535.1172381/94‑1 (MQ=60)
CAAAATATTCGTAGCTGTAGCCCGCTGAATATACGCTTGGTAACCCCATCGCCGGCTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGC > SRR4302535.36801/1‑94 (MQ=60)
AAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTG > SRR4302535.888556/1‑94 (MQ=60)
AAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTG < SRR4302535.1899269/94‑1 (MQ=60)
AAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTG < SRR4302535.1947074/94‑1 (MQ=60)
AATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAG < SRR4302535.4164475/94‑1 (MQ=60)
AATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAG > SRR4302535.775477/1‑94 (MQ=60)
ATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATT < SRR4302535.3942785/94‑1 (MQ=60)
TTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTT < SRR4302535.342871/94‑1 (MQ=60)
TTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTT < SRR4302535.625336/94‑1 (MQ=60)
TCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTT > SRR4302535.2156526/1‑94 (MQ=60)
CGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTT > SRR4302535.3505471/1‑94 (MQ=60)
CGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTT > SRR4302535.1008713/1‑94 (MQ=60)
GTAGCTGTAGCCCGCTGAATATCCGCTTTGTAACCCCATCGCCGGTTGCAATATAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGTTTTTTA > SRR4302535.1630305/1‑94 (MQ=60)
TAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTAC < SRR4302535.3336851/94‑1 (MQ=60)
AGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACC < SRR4302535.3553045/94‑1 (MQ=60)
GCTGTAGCCCGCTGAATATCCGCTTAGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCC < SRR4302535.179977/94‑1 (MQ=60)
GTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCA < SRR4302535.2027370/94‑1 (MQ=60)
CTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCA < SRR4302535.1306629/94‑1 (MQ=60)
TAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTT < SRR4302535.2657169/94‑1 (MQ=60)
TAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTT < SRR4302535.2657170/94‑1 (MQ=60)
AGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTC > SRR4302535.1461524/1‑94 (MQ=60)
AGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTC > SRR4302535.451352/1‑94 (MQ=60)
GCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCG > SRR4302535.4436051/1‑94 (MQ=60)
GCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCG < SRR4302535.4616086/94‑1 (MQ=60)
CGGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGAC < SRR4302535.4086484/94‑1 (MQ=60)
CCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGAC > SRR4302535.1721397/1‑94 (MQ=60)
CGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACA > SRR4302535.735797/1‑94 (MQ=60)
CGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACA > SRR4302535.2685824/1‑94 (MQ=60)
TGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATA < SRR4302535.4129238/94‑1 (MQ=60)
GAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAA < SRR4302535.1882526/94‑1 (MQ=60)
AATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAAC < SRR4302535.4578371/94‑1 (MQ=60)
ATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACC > SRR4302535.996341/1‑94 (MQ=60)
ATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACC < SRR4302535.1883750/94‑1 (MQ=60)
TATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCC < SRR4302535.3633300/94‑1 (MQ=60)
TATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCC < SRR4302535.1421304/94‑1 (MQ=60)
TATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCC > SRR4302535.4540049/1‑94 (MQ=60)
ATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCC < SRR4302535.3626448/94‑1 (MQ=60)
GCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCA < SRR4302535.1401621/94‑1 (MQ=60)
GGTAACCCCATCGCCGGTGGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATT < SRR4302535.489661/94‑1 (MQ=60)
GTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTC < SRR4302535.2599632/94‑1 (MQ=60)
GTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTC < SRR4302535.3331376/94‑1 (MQ=60)
GTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTC < SRR4302535.509989/94‑1 (MQ=60)
AACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCAT < SRR4302535.2326561/94‑1 (MQ=60)
AACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCAT < SRR4302535.2998504/94‑1 (MQ=60)
ACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATG < SRR4302535.4352439/94‑1 (MQ=60)
ACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATG > SRR4302535.3956912/1‑94 (MQ=60)
ACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATG < SRR4302535.597012/94‑1 (MQ=60)
CCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCC > SRR4302535.3230062/1‑94 (MQ=60)
CCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCC > SRR4302535.1647765/1‑94 (MQ=60)
CCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCC > SRR4302535.1550229/1‑94 (MQ=60)
CCATCGCCGGTTGCAATACAAAACGCTGGCC‑TTTTTtttaatttcccggtgagttttttaccacctccacaattacccccgcaccatcatgccc > SRR4302535.1060535/1‑36 (MQ=60)
CATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCG > SRR4302535.1286902/1‑94 (MQ=60)
ATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGG > SRR4302535.258510/1‑94 (MQ=60)
CGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTA < SRR4302535.136222/94‑1 (MQ=60)
CGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTA < SRR4302535.4401509/94‑1 (MQ=60)
CGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTA > SRR4302535.4403109/1‑94 (MQ=60)
CGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTA < SRR4302535.850020/94‑1 (MQ=60)
CCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAAT > SRR4302535.418411/1‑94 (MQ=60)
CCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAAT < SRR4302535.1389410/94‑1 (MQ=60)
CGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATG > SRR4302535.2160323/1‑94 (MQ=60)
CGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATG < SRR4302535.1285676/94‑1 (MQ=60)
CGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATG > SRR4302535.2789247/1‑94 (MQ=60)
CGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTCACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATG < SRR4302535.2531923/94‑1 (MQ=60)
GTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGAC > SRR4302535.3439659/1‑94 (MQ=60)
GTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGAC < SRR4302535.1231393/94‑1 (MQ=60)
GTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGAC > SRR4302535.110415/1‑94 (MQ=60)
TTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAGCCCCGGCACATTCATGCCCGGTAATGACC < SRR4302535.1454163/94‑1 (MQ=60)
TGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCG > SRR4302535.71780/1‑94 (MQ=60)
TGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCG < SRR4302535.3521843/94‑1 (MQ=60)
CAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGA > SRR4302535.1727350/1‑94 (MQ=60)
CAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTCCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGA > SRR4302535.1005982/1‑94 (MQ=60)
AATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGAT < SRR4302535.960142/94‑1 (MQ=60)
AATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGAT > SRR4302535.785635/1‑94 (MQ=60)
ATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATACCCCCGGCACATTCATGCCCGGTAATGACCGGATG < SRR4302535.2745000/94‑1 (MQ=60)
ATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATACCCCCGGCACATTCATGCCCGGTAATGACCGGATG < SRR4302535.2744999/94‑1 (MQ=60)
ATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATG < SRR4302535.848798/94‑1 (MQ=60)
TACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGA < SRR4302535.3492913/94‑1 (MQ=60)
TACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGA > SRR4302535.4352421/1‑94 (MQ=60)
CAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATT > SRR4302535.3773434/1‑94 (MQ=60)
CAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATT > SRR4302535.1465173/1‑94 (MQ=60)
CAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATT > SRR4302535.1075431/1‑94 (MQ=60)
AAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTT > SRR4302535.3512245/1‑94 (MQ=60)
AAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTT < SRR4302535.1043170/94‑1 (MQ=60)
AAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTT > SRR4302535.2689836/1‑94 (MQ=60)
ACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCT < SRR4302535.1712954/94‑1 (MQ=60)
GCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTAA > SRR4302535.4624802/1‑94 (MQ=60)
CTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTAAA > SRR4302535.2813545/1‑94 (MQ=60)
CTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTAAA > SRR4302535.4670527/1‑94 (MQ=60)
TGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTAAAT < SRR4302535.4093747/94‑1 (MQ=60)
CT‑TTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCTCATTCATGCCCGGTAATGACCGGATGATTTTCTAAATCGTC < SRR4302535.553891/94‑1 (MQ=60)
CT‑TTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTAAATCGTC > SRR4302535.3692118/1‑94 (MQ=60)
T‑TTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTAAATCGTCG > SRR4302535.31828/1‑94 (MQ=60)
TTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTAAATCGTCGG > SRR4302535.1837914/1‑94 (MQ=60)
TTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTAAATCGTCGGGT < SRR4302535.1225160/94‑1 (MQ=60)
TTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTAAATCGTCGGGTA > SRR4302535.4528302/1‑94 (MQ=60)
TTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTAAATCGTCGGGTA > SRR4302535.1494364/1‑94 (MQ=60)
TTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTAAATCGTCGGGTA > SRR4302535.1523090/1‑94 (MQ=60)
TTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTAAATCGTCGGGTA > SRR4302535.3635972/1‑94 (MQ=60)
TTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTAAATCGTCGGGTA > SRR4302535.3329792/1‑94 (MQ=60)
TATATTTGCCAGTGAGATTTTTACCCACTTCGACATTAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTAAATCGTCGGGTAC > SRR4302535.4408608/1‑94 (MQ=60)
|
GGCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCC‑TTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTAAATCGTCGGGTAC > NC_000913/3075129‑3075313
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
