Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1873 183.1 9376148 98.2% 9207377 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,089,241 G→A R30H (CGC→CAC)  b2946 → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,089,2410GA100.0% 746.9 / NA 207R30H (CGC→CAC) b2946hypothetical protein
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (93/114);  total (93/114)

Only 100 of 214 total aligned reads displayed.

CTATGCGTATCCCCCGCATTTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCGCGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCAGGTCTTTGACGCCGAAATTACCAGCGCCAGCAAA  >  NC_000913/3089151‑3089329
                                                                                          |                                                                                        
cTATGCGTATCCCCCGCATTTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGcacg                                                                                        >  1:981971/1‑93 (MQ=255)
cTATGCGTATCCCCCGCATTTATCATCCTCAACCACTGACAAGCCATTCTCACATCGCGCTTTGTGATGATGCTGCCACACATATCGGGcacg                                                                                        >  2:1569416/1‑93 (MQ=255)
  aTGCGTATCCCCCGCATTTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTa                                                                                      <  2:1533185/93‑1 (MQ=255)
   tGCGTATCCCCCGCATTTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTAc                                                                                     <  2:3481905/93‑1 (MQ=255)
    gCGTATCCCCCGCATTTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACt                                                                                    <  1:1886832/93‑1 (MQ=255)
      gTATCCCCCGCATTTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTgc                                                                                  <  2:245516/93‑1 (MQ=255)
       tATCCCCCGCATTTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTgcg                                                                                 >  1:3356107/1‑93 (MQ=255)
       tATCCCCCGCATTTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTgcg                                                                                 >  2:2223979/1‑93 (MQ=255)
         tCCCCCGCATTTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCa                                                                               >  1:1431968/1‑93 (MQ=255)
         tCCCCCGCATTTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCa                                                                               >  2:1435924/1‑93 (MQ=255)
         tCCCCCGCATTTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCa                                                                               >  2:1188691/1‑93 (MQ=255)
           ccccGCATTTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATg                                                                             >  1:3682458/1‑93 (MQ=255)
             ccGCATTTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGGGCATggg                                                                           <  1:1378627/93‑1 (MQ=255)
               gCATTTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGc                                                                         >  1:1644414/1‑93 (MQ=255)
                 aTTTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCg                                                                       >  1:2053951/1‑93 (MQ=255)
                 aTTTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGAACGTACTGCGCATGGGGCCg                                                                       >  2:3593819/1‑93 (MQ=255)
                  tttATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCgg                                                                      <  1:2213125/93‑1 (MQ=255)
                   ttATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCggg                                                                     <  1:616656/93‑1 (MQ=255)
                   ttATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCggg                                                                     <  1:2497267/93‑1 (MQ=255)
                     atcatcCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGc                                                                   <  1:4548429/93‑1 (MQ=255)
                      tcatcCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCa                                                                  <  1:1139735/93‑1 (MQ=255)
                       catcatGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAg                                                                 <  2:4509399/93‑1 (MQ=255)
                       catcCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAg                                                                 <  1:3959493/93‑1 (MQ=255)
                       catcCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAg                                                                 <  1:124056/93‑1 (MQ=255)
                        atcCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAgg                                                                <  2:230860/93‑1 (MQ=255)
                           cTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGt                                                             <  2:2618912/93‑1 (MQ=255)
                           cTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGt                                                             <  1:3722956/93‑1 (MQ=255)
                           cTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGt                                                             >  1:2959475/1‑93 (MQ=255)
                            tGACCCACTGCCCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGtt                                                            <  1:59056/93‑1 (MQ=255)
                             gAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTg                                                           >  1:4413965/1‑93 (MQ=255)
                             gAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTg                                                           >  1:1606764/1‑93 (MQ=255)
                               aCCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCa                                                         >  2:2049938/1‑93 (MQ=255)
                               aCCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCa                                                         >  1:873561/1‑93 (MQ=255)
                                ccACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCaa                                                        <  1:4338586/93‑1 (MQ=255)
                                ccACTCACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCaa                                                        <  1:219509/93‑1 (MQ=255)
                                 cACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAAt                                                       <  1:3191583/93‑1 (MQ=255)
                                 cACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAAt                                                       >  1:3459377/1‑93 (MQ=255)
                                 cACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAAt                                                       <  2:1919116/93‑1 (MQ=255)
                                 cACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAAt                                                       >  2:219635/1‑93 (MQ=255)
                                 cACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAAt                                                       >  2:3305481/1‑93 (MQ=255)
                                 cACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGATGCAAt                                                       >  2:1859562/1‑93 (MQ=255)
                                  ccTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAAtt                                                      <  2:2847006/92‑1 (MQ=255)
                                  aCTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAAtt                                                      >  2:3997436/1‑93 (MQ=255)
                                  aCTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAAtt                                                      >  2:79659/1‑93 (MQ=255)
                                    tGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGt                                                    >  2:4064620/1‑93 (MQ=255)
                                     gACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGtt                                                   <  1:2369563/93‑1 (MQ=255)
                                      aCCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGttt                                                  >  1:805064/1‑93 (MQ=255)
                                       ccAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTg                                                 >  2:1935130/1‑93 (MQ=255)
                                         aGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTgcg                                               >  1:4033342/1‑91 (MQ=255)
                                         aGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGAc                                               <  1:1102776/93‑1 (MQ=255)
                                         aGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGAc                                               >  1:1627562/1‑93 (MQ=255)
                                         aGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGAc                                               <  2:3239604/93‑1 (MQ=255)
                                          gCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCACATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACg                                              >  2:1321470/1‑93 (MQ=255)
                                            cATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGt                                            >  1:287454/1‑93 (MQ=255)
                                             aTTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTa                                           >  2:3277523/1‑93 (MQ=255)
                                             aTTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTa                                           <  2:176513/93‑1 (MQ=255)
                                              ttCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAg                                          >  2:4612688/1‑93 (MQ=255)
                                               tctcACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGc                                         <  2:1395215/93‑1 (MQ=255)
                                               tctcACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGc                                         <  2:4149661/93‑1 (MQ=255)
                                               tctcACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGc                                         >  2:3772338/1‑93 (MQ=255)
                                                  cacaTCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAAc                                      <  2:2641502/93‑1 (MQ=255)
                                                   acaTCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAAcc                                     >  1:2409185/1‑93 (MQ=255)
                                                    caTCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCa                                    >  1:3068177/1‑93 (MQ=255)
                                                    caTCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCa                                    >  1:3862533/1‑93 (MQ=255)
                                                    caTCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCa                                    <  1:3096566/93‑1 (MQ=255)
                                                    caTCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCa                                    >  2:4468506/1‑93 (MQ=255)
                                                    caTCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCa                                    <  2:552637/93‑1 (MQ=255)
                                                      tCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCAgg                                  <  2:2500560/93‑1 (MQ=255)
                                                      tCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCAgg                                  >  1:4589507/1‑93 (MQ=255)
                                                        gcgcTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCAGGTc                                <  2:1230911/93‑1 (MQ=255)
                                                        gcgcTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCAGGTc                                <  1:82530/93‑1 (MQ=255)
                                                        gcgcTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCAGGTc                                <  2:1008040/93‑1 (MQ=255)
                                                        gcgcTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGCAGCAACCAggct                                >  2:1289896/1‑91 (MQ=255)
                                                           cTTTGCGAAGATGCCGCCAACCATATCGGGCATGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCAGGTCttt                             <  2:3791870/93‑1 (MQ=255)
                                                             ttGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCAGGTCTTTGa                           <  2:1143801/93‑1 (MQ=255)
                                                             ttGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCAGGTCTTTGa                           >  1:1732626/1‑93 (MQ=255)
                                                              tGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCAGGTCTTTGAc                          <  2:2769263/93‑1 (MQ=255)
                                                                 gAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCAGGTCTTTGACGcc                       >  2:2033680/1‑93 (MQ=255)
                                                                 gAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACAAGGTCTTTGACGcc                       >  1:4217402/1‑93 (MQ=255)
                                                                  aaGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCAGGTCTTTGACGCCg                      >  2:355759/1‑93 (MQ=255)
                                                                   aGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCAGGTCTTTGACGCCGa                     >  2:3353206/1‑93 (MQ=255)
                                                                    gATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCAGGTCTTTGACGCCGaa                    >  2:3003095/1‑93 (MQ=255)
                                                                    gATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCAGGTCTTTGACGCCGaa                    >  1:133932/1‑93 (MQ=255)
                                                                      tGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCAGGTCTTTGACGCCGAAAt                  <  1:1474988/93‑1 (MQ=255)
                                                                       gccgccAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCAGGTCTTTGACGCCGAAAtt                 <  2:2357432/93‑1 (MQ=255)
                                                                        ccgccAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCAGGTCTTTGACGCCGAAATTa                <  2:3811226/93‑1 (MQ=255)
                                                                         cgccAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCAGGTCTTTGACGCCGAAATTAc               <  2:2534697/93‑1 (MQ=255)
                                                                            cAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCAGGTCTTTGACGCCGAAATTACCAg            <  1:2783798/93‑1 (MQ=255)
                                                                            cAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCAGGTCTTTGACGCCGAAATTACCAg            <  1:1431006/93‑1 (MQ=255)
                                                                            cAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCAGGTCTTTGACGCCGAAATTACCAg            <  1:3432274/93‑1 (MQ=255)
                                                                               ccATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCAGGTCTTTGACGCCGAAATTACCAgcgc         >  2:2614891/1‑93 (MQ=255)
                                                                                cATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCAGGTCTTTGACGCCGAAATTACCAGCGcc        >  1:2734367/1‑93 (MQ=255)
                                                                                 atatCGGGCACGTACTGCGCATGGGGCCGGGGCAGGTGTTGCAATTGTTTGACGGTAGCAACCAGGTCTTTGACGCCGAAATTACCAGCGCCa       <  2:3184290/93‑1 (MQ=255)
                                                                                 atatCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCAGGTCTTTGACGCCGAAATTACCAGCGCCa       <  2:2006357/93‑1 (MQ=255)
                                                                                  tatCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCAGGTCTTTGACGCCGAAATTACCAGCGCCAg      >  1:1670247/1‑93 (MQ=255)
                                                                                  tatCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCAGGTCTTTGACGCCGAAATTACCAGCGCCAg      <  1:2588649/93‑1 (MQ=255)
                                                                                  tatCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCAGGTCTTTGACGCCGAAATTACCAGCGCCAg      >  2:3933725/1‑93 (MQ=255)
                                                                                  tatCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCAGGTCTTTGACGCCGAAATTACCAGCGCCAg      >  1:165428/1‑93 (MQ=255)
                                                                                  tatCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCAGGTCTTTGACGCCGAAATTACCAGCGCCAg      >  1:3839358/1‑93 (MQ=255)
                                                                                     cGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCAGGTCTTTGACGCCGAAATTACCAGCGCCAGCaa   <  2:1452834/93‑1 (MQ=255)
                                                                                          |                                                                                        
CTATGCGTATCCCCCGCATTTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCGCGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCAGGTCTTTGACGCCGAAATTACCAGCGCCAGCAAA  >  NC_000913/3089151‑3089329

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AACTATGCGTATCCCCCGCATTTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCGCGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCAGGTCTTTGACGCCGAAATTACCAGCGCCAGCAAAAAA  >  NC_000913/3089149‑3089332
                                                                                            |                                                                                           
AACTATGCGTATCCCCCGCATTTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCAC                                                                                            <  SRR4302535.2874542/94‑1 (MQ=60)
AACTATGCGTATCCCCCGCATTTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCAC                                                                                            <  SRR4302535.1790613/94‑1 (MQ=60)
 ACTATGCGTATCCCCCGCATTTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACG                                                                                           >  SRR4302535.988950/1‑94 (MQ=60)
 ACTATGCGTATCCCCCGCATTTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACG                                                                                           <  SRR4302535.874026/94‑1 (MQ=60)
  CTATGCGTATCCCCCGCATTTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGT                                                                                          >  SRR4302535.1353711/1‑94 (MQ=60)
  CTATGCGTATCCCCCGCATTTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGT                                                                                          >  SRR4302535.1602743/1‑94 (MQ=60)
    ATGCGTATCCCCCGCATTTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTAC                                                                                        >  SRR4302535.1644105/1‑94 (MQ=60)
    ATGCGTATCCCCCGCATTTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTAC                                                                                        <  SRR4302535.3906013/94‑1 (MQ=60)
     TGCGTATCCCCCGCATTTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACT                                                                                       <  SRR4302535.2214588/94‑1 (MQ=60)
     TGCGTATCCCCCGCATTTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACT                                                                                       <  SRR4302535.3293728/94‑1 (MQ=60)
      GCGTATCCCCCGCATTTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTG                                                                                      <  SRR4302535.1900423/94‑1 (MQ=60)
        GTATCCCCCGCATTTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCG                                                                                    >  SRR4302535.3379474/1‑94 (MQ=60)
        GTATCCCCCGCATTTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCG                                                                                    >  SRR4302535.3055729/1‑94 (MQ=60)
         TATCCCCCGCATTTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGC                                                                                   >  SRR4302535.2600978/1‑94 (MQ=60)
          ATCCCCCGCATTTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCA                                                                                  >  SRR4302535.1442189/1‑94 (MQ=60)
          ATCCCCCGCATTTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCA                                                                                  >  SRR4302535.4718531/1‑94 (MQ=60)
            CCCCCGCATTTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATG                                                                                >  SRR4302535.3707943/1‑94 (MQ=60)
            CCCCCGCATTTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATG                                                                                <  SRR4302535.2864983/94‑1 (MQ=60)
            CCCCCGCATTTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATG                                                                                >  SRR4302535.4166217/1‑94 (MQ=60)
            CCCCCGCATTTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATG                                                                                >  SRR4302535.3707942/1‑94 (MQ=60)
              CCCGCATTTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGG                                                                              >  SRR4302535.818533/1‑94 (MQ=60)
              CCCGCATTTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGG                                                                              <  SRR4302535.2423972/94‑1 (MQ=60)
               CCGCATTTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGGGCATGGGG                                                                             <  SRR4302535.1388461/94‑1 (MQ=60)
                CGCATTTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGC                                                                            >  SRR4302535.1656300/1‑94 (MQ=60)
                CGCATTTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGC                                                                            <  SRR4302535.979996/94‑1 (MQ=60)
                 gacgTTATCATCCTAAACCCCCGACCAGCCATTCTCACACCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCC                                                                           <  SRR4302535.86711/90‑1 (MQ=60)
                  CATTTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCG                                                                          >  SRR4302535.4594383/1‑94 (MQ=60)
                  CATTTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCG                                                                          <  SRR4302535.3599900/94‑1 (MQ=60)
                  CATTTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCG                                                                          >  SRR4302535.2068746/1‑94 (MQ=60)
                   ATTTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGG                                                                         >  SRR4302535.1695559/1‑94 (MQ=60)
                    TTTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGG                                                                        <  SRR4302535.2228884/94‑1 (MQ=60)
                     TTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGG                                                                       <  SRR4302535.2515283/94‑1 (MQ=60)
                     TTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGG                                                                       <  SRR4302535.620945/94‑1 (MQ=60)
                      TAGCATCCTGAACCACTGACCAGCCAGTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGC                                                                      <  SRR4302535.3874222/94‑1 (MQ=60)
                       ATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCA                                                                     <  SRR4302535.4579526/94‑1 (MQ=60)
                        TCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAG                                                                    <  SRR4302535.1147856/94‑1 (MQ=60)
                         CATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGG                                                                   <  SRR4302535.3986533/94‑1 (MQ=60)
                         CATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGG                                                                   <  SRR4302535.124924/94‑1 (MQ=60)
                            CCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGT                                                                >  SRR4302535.2980257/1‑94 (MQ=60)
                             CTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTT                                                               <  SRR4302535.1941953/94‑1 (MQ=60)
                             CTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTT                                                               <  SRR4302535.3748745/94‑1 (MQ=60)
                              TGACCCACTGCCCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTG                                                              <  SRR4302535.59490/94‑1 (MQ=60)
                              TGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTG                                                              >  SRR4302535.4444173/1‑94 (MQ=60)
                              TGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTG                                                              >  SRR4302535.1618357/1‑94 (MQ=60)
                                AACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCA                                                            >  SRR4302535.879752/1‑94 (MQ=60)
                                  CCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAAT                                                          <  SRR4302535.4368255/94‑1 (MQ=60)
                                  CCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAAT                                                          >  SRR4302535.3483428/1‑94 (MQ=60)
                                  CCACTCACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAAT                                                          <  SRR4302535.221020/94‑1 (MQ=60)
                                   CACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATT                                                         <  SRR4302535.3213660/94‑1 (MQ=60)
                                   CACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATT                                                         <  SRR4302535.2193980/94‑1 (MQ=60)
                                    CCTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTG                                                        <  SRR4302535.2955829/94‑1 (MQ=60)
                                     CTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGT                                                       >  SRR4302535.72150/1‑94 (MQ=60)
                                       GACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTT                                                     <  SRR4302535.2386575/94‑1 (MQ=60)
                                       GACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTT                                                     <  SRR4302535.2383272/94‑1 (MQ=60)
                                       GACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTT                                                     >  SRR4302535.810715/1‑94 (MQ=60)
                                        ACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTG                                                    <  SRR4302535.1637644/94‑1 (MQ=60)
                                        ACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTG                                                    <  SRR4302535.1430284/94‑1 (MQ=60)
                                         CCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGA                                                   >  SRR4302535.338687/1‑94 (MQ=60)
                                          CAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGcg                                                  >  SRR4302535.4060935/1‑92 (MQ=60)
                                          CAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGAC                                                  >  SRR4302535.1639311/1‑94 (MQ=60)
                                          CAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGAC                                                  <  SRR4302535.334585/94‑1 (MQ=60)
                                           AGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACG                                                 <  SRR4302535.3813662/94‑1 (MQ=60)
                                           AGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACG                                                 <  SRR4302535.1110656/94‑1 (MQ=60)
                                            GCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGG                                                <  SRR4302535.2471650/94‑1 (MQ=60)
                                             CCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGT                                               >  SRR4302535.289468/1‑94 (MQ=60)
                                              CATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTA                                              <  SRR4302535.1181467/94‑1 (MQ=60)
                                               ATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAG                                             >  SRR4302535.4669160/1‑94 (MQ=60)
                                                  CTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAA                                          <  SRR4302535.1582948/94‑1 (MQ=60)
                                                    CACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACC                                        >  SRR4302535.1441555/1‑94 (MQ=60)
                                                    CACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACC                                        >  SRR4302535.2426529/1‑94 (MQ=60)
                                                     ACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCA                                       >  SRR4302535.3089611/1‑94 (MQ=60)
                                                     ACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCA                                       >  SRR4302535.3889108/1‑94 (MQ=60)
                                                      CATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCAG                                      <  SRR4302535.3100496/94‑1 (MQ=60)
                                                      CATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCAG                                      <  SRR4302535.3118130/94‑1 (MQ=60)
                                                       ATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCAGG                                     >  SRR4302535.4620751/1‑94 (MQ=60)
                                                          GCGCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCAGGTCT                                  <  SRR4302535.83115/94‑1 (MQ=60)
                                                            GCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCAGGTCTTT                                >  SRR4302535.1139621/1‑94 (MQ=60)
                                                            GCTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCAGGTCTTT                                <  SRR4302535.1660336/94‑1 (MQ=60)
                                                            GCTTTGCGAACATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCAGGTCTTT                                <  SRR4302535.596405/94‑1 (MQ=60)
                                                             CTTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCAGGTCTTTG                               <  SRR4302535.3472158/94‑1 (MQ=60)
                                                              TTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCAGGTCTTTGA                              >  SRR4302535.1745148/1‑94 (MQ=60)
                                                              TTTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCAGGTCTTTGA                              >  SRR4302535.4558068/1‑94 (MQ=60)
                                                               TTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCTCACGGGGCCGGGGCAGGCGTTGCAATTGTTTGACTGTAGCAACCAGGTCTTTGAC                             <  SRR4302535.3182981/94‑1 (MQ=60)
                                                               TTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCAGGTCTTTGAC                             <  SRR4302535.1281021/94‑1 (MQ=60)
                                                               TTGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCAGGTCTTTGAC                             <  SRR4302535.4036554/94‑1 (MQ=60)
                                                                TGCGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCAGGTCTTTGACG                            <  SRR4302535.396519/94‑1 (MQ=60)
                                                                  CGAAGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACAAGGTCTTTGACGCC                          >  SRR4302535.4246262/1‑94 (MQ=60)
                                                                     AGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCAGGTCTTTGACGCCGAA                       >  SRR4302535.134867/1‑94 (MQ=60)
                                                                     AGATGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCAGGTCTTTGACGCCGAA                       >  SRR4302535.1457024/1‑94 (MQ=60)
                                                                        TGCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCAGGTCTTTGACGCCGAAATT                    <  SRR4302535.1485548/94‑1 (MQ=60)
                                                                         GCCGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCAGGTCTTTGACGCCGAAATTA                   <  SRR4302535.265685/94‑1 (MQ=60)
                                                                           CGCCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGAAGGTAGCAACCAGGTCTTTGACGCCGAAATTACA                 >  SRR4302535.4334603/1‑94 (MQ=60)
                                                                             CCAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCAGGTCTTTGACGCCGAAATTACCAG               <  SRR4302535.2764532/94‑1 (MQ=60)
                                                                              CAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCAGGTCTTTGACGCCGAAATTACCAGC              <  SRR4302535.3456126/94‑1 (MQ=60)
                                                                              CAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCAGGTCTTTGACGCCGAAATTACCAGC              <  SRR4302535.1441216/94‑1 (MQ=60)
                                                                              CAACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCAGGTCTTTGACGCCGAAATTACCAGC              <  SRR4302535.2803606/94‑1 (MQ=60)
                                                                               AACCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCAGGTCTTTGACGCCGAAATTACCAGCG             <  SRR4302535.1680934/94‑1 (MQ=60)
                                                                                 CCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCAGGTCTTTGACGCCGAAATTACCAGCGCC           >  SRR4302535.2753878/1‑94 (MQ=60)
                                                                                 CCATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCAGGTCTTTGACGCCGAAATTACCAGCGCC           >  SRR4302535.2055754/1‑94 (MQ=60)
                                                                                   ATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCAGGTCTTTGACGCCGAAATTACCAGCGCCAG         >  SRR4302535.3865821/1‑94 (MQ=60)
                                                                                   ATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCAGGTCTTTGACGCCGAAATTACCAGCGCCAG         >  SRR4302535.166581/1‑94 (MQ=60)
                                                                                   ATATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCAGGTCTTTGACGCCGAAATTACCAGCGCCAG         >  SRR4302535.1682336/1‑94 (MQ=60)
                                                                                    TATCGGGCACGTACTGCGCATGTGGCCGGGGCGGGCGTTGCAATTGTTTGACGGTAGCAACCAGGTCTTTGACGCCGAAATTACCAGCGCCAGA        >  SRR4302535.1766689/1‑94 (MQ=60)
                                                                                    TATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCAGGTCTTTGACGCCGAAATTACCAGCGCCAGC        <  SRR4302535.2607240/94‑1 (MQ=60)
                                                                                     ATCGGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCAGGTCTTTGACGCCGAAATTACCAGCGCCAGCA       <  SRR4302535.4435047/94‑1 (MQ=60)
                                                                                        GGGCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCAGGTCTTTGACGCCGAAATTACCAGCGCCAGCAAAA    <  SRR4302535.2673025/94‑1 (MQ=60)
                                                                                          GCACGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCAGGTCTTTGACGCCGAAATTACCAGCGCCAGCAAAAAA  <  SRR4302535.1941169/94‑1 (MQ=60)
                                                                                            |                                                                                           
AACTATGCGTATCCCCCGCATTTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCGCGTACTGCGCATGGGGCCGGGGCAGGCGTTGCAATTGTTTGACGGTAGCAACCAGGTCTTTGACGCCGAAATTACCAGCGCCAGCAAAAAA  >  NC_000913/3089149‑3089332

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑