Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1873 183.1 9376148 98.2% 9207377 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,099,727 T→C intergenic (‑85/+98) yggN ← / ← b2959 hypothetical protein/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,099,7270TC100.0% 777.8 / NA 245intergenic (‑85/+98)yggN/b2959hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (139/106);  total (139/106)

Only 100 of 263 total aligned reads displayed.

ATCATAGTCTTCCCTCAAG‑AAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGT  >  NC_000913/3099638‑3099816
                                                                                          |                                                                                         
atcatAGTCTTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCaa                                                                                         >  2:4637156/1‑93 (MQ=255)
atcatAGTCTTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCaa                                                                                         >  1:277945/1‑93 (MQ=255)
 tcatAGTCTTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCaaa                                                                                        <  1:3482395/93‑1 (MQ=255)
 tcatAGTCTTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCaaa                                                                                        >  2:4404127/1‑93 (MQ=255)
 tcatAGTCTTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCaaa                                                                                        <  2:4351984/93‑1 (MQ=255)
 tcatAGTCTTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCaaa                                                                                        >  1:4340152/1‑93 (MQ=255)
    tAGTCTTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCGCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAacac                                                                                     <  2:3124975/93‑1 (MQ=38)
    tAGTCTTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAacac                                                                                     <  1:2136168/93‑1 (MQ=38)
     aGTCTTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACAcc                                                                                    >  1:3722593/1‑93 (MQ=255)
     aGTCTTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACAcc                                                                                    <  2:4162023/93‑1 (MQ=38)
      gTCTTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCt                                                                                   <  2:3387202/93‑1 (MQ=38)
       tCTTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCtt                                                                                  >  1:3943651/1‑93 (MQ=255)
        cTTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTa                                                                                 <  2:267956/93‑1 (MQ=255)
        cTTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTa                                                                                 <  1:148742/93‑1 (MQ=38)
         ttCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTAt                                                                                >  1:2698567/1‑93 (MQ=255)
         ttCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTAt                                                                                <  2:2458772/93‑1 (MQ=38)
         ttCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTAt                                                                                >  2:3109665/1‑93 (MQ=255)
          tCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATc                                                                               <  2:2895706/93‑1 (MQ=255)
           cccTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATcc                                                                              <  1:2191148/93‑1 (MQ=38)
            ccTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATccc                                                                             >  2:3414871/1‑93 (MQ=255)
                 agaaaaaaTCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCGTa                                                                        >  1:279068/4‑93 (MQ=255)
                 agaaaaaaTCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTa                                                                        >  2:1757629/4‑93 (MQ=255)
                  gaaaaaaTCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTAc                                                                       >  1:1109124/3‑93 (MQ=255)
                  gaaaaaaTCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTAc                                                                       >  2:3248317/3‑93 (MQ=255)
                  gaaaaaaTCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTAc                                                                       >  2:2366836/3‑93 (MQ=255)
                  gaaaaaaTCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTAc                                                                       >  2:184625/3‑93 (MQ=255)
                     aaaaTCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCg                                                                    >  2:1966308/1‑93 (MQ=255)
                       aaTCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGAt                                                                  <  2:740487/93‑1 (MQ=255)
                          cAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGt                                                               <  1:4543642/93‑1 (MQ=255)
                          cAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGt                                                               >  1:2025434/1‑93 (MQ=255)
                            ggCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGc                                                             <  2:395423/93‑1 (MQ=255)
                            ggCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGc                                                             <  1:3653832/93‑1 (MQ=255)
                               cAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATc                                                          <  1:2395199/93‑1 (MQ=255)
                                aGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCt                                                         >  1:3290603/1‑93 (MQ=255)
                                aGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCt                                                         >  2:3309938/1‑93 (MQ=255)
                                 gCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCtt                                                        >  2:1384233/1‑93 (MQ=255)
                                 gCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCtt                                                        <  1:3519955/93‑1 (MQ=255)
                                 gCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCtt                                                        <  2:3293679/93‑1 (MQ=255)
                                    tttGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTcc                                                     >  1:4211801/1‑93 (MQ=255)
                                    tttGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTcc                                                     >  1:34458/1‑93 (MQ=255)
                                    tttGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTcc                                                     >  1:615778/1‑93 (MQ=255)
                                    tttGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTcc                                                     >  1:2844841/1‑93 (MQ=255)
                                    tttGCTGGCCCAACATTGATAACAAAGTACGCGTTCTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTcc                                                     <  2:2388483/93‑1 (MQ=37)
                                       gCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAgg                                                  >  2:2414656/1‑93 (MQ=255)
                                          ggacccAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCt                                               <  2:3903791/90‑1 (MQ=255)
                                          ggCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCt                                               <  1:3563378/93‑1 (MQ=255)
                                           gCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTg                                              >  2:3717831/1‑93 (MQ=255)
                                            ccccAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGa                                             <  1:2888384/93‑1 (MQ=255)
                                            ccccAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGa                                             <  1:2520886/93‑1 (MQ=255)
                                             cccAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGAt                                            >  2:1500795/1‑93 (MQ=255)
                                              ccAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATa                                           >  2:902285/1‑93 (MQ=255)
                                               cAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATaa                                          <  1:1052172/93‑1 (MQ=255)
                                               cAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATaa                                          >  1:2870210/1‑93 (MQ=255)
                                                 gATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGc                                        <  2:3442400/93‑1 (MQ=255)
                                                 gATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGc                                        >  2:1685817/1‑93 (MQ=255)
                                                 gATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGc                                        >  2:257344/1‑93 (MQ=255)
                                                    tGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTa                                     >  2:459265/1‑93 (MQ=255)
                                                    tGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTa                                     <  1:4636545/93‑1 (MQ=255)
                                                     gATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAg                                    >  1:689322/1‑93 (MQ=255)
                                                     gATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAg                                    >  2:2948720/1‑93 (MQ=255)
                                                     gATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAg                                    >  1:2447780/1‑93 (MQ=255)
                                                     gATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAg                                    <  2:1068988/93‑1 (MQ=255)
                                                      aTAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAgc                                   <  2:2247134/93‑1 (MQ=255)
                                                       tAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAgcg                                  >  1:2097774/1‑93 (MQ=255)
                                                       tAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAgcg                                  >  2:535040/1‑93 (MQ=255)
                                                         aCAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCa                                >  1:2352687/1‑93 (MQ=255)
                                                         aCAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCa                                <  2:4123481/93‑1 (MQ=255)
                                                          cAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCAt                               >  2:4041913/1‑93 (MQ=255)
                                                           aaaGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATc                              <  2:2707009/93‑1 (MQ=255)
                                                           aaaGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATc                              >  2:3366073/1‑93 (MQ=255)
                                                            aaGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCa                             <  1:872630/93‑1 (MQ=255)
                                                             aGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAg                            >  1:4264372/1‑93 (MQ=255)
                                                             aGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAg                            <  2:1505734/93‑1 (MQ=255)
                                                               tACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGc                          <  2:1132699/93‑1 (MQ=255)
                                                               tACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGc                          <  1:3695312/93‑1 (MQ=255)
                                                                aCGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCa                         <  1:595633/93‑1 (MQ=255)
                                                                aCGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCa                         >  2:3845614/1‑93 (MQ=255)
                                                                  gcgTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGt                       >  1:1333655/1‑93 (MQ=255)
                                                                  gcgTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGt                       <  2:1438398/93‑1 (MQ=255)
                                                                  gcgTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGAAGCGCATCAGGAAGt                       >  1:3898613/1‑93 (MQ=255)
                                                                    gTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGttt                     <  1:1751094/93‑1 (MQ=255)
                                                                    gTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGttt                     <  2:3531285/93‑1 (MQ=255)
                                                                    gTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGttt                     <  1:1277686/93‑1 (MQ=255)
                                                                     ttttCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGtttt                    >  2:15857/1‑93 (MQ=255)
                                                                      tttCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTg                   >  2:3101193/1‑93 (MQ=255)
                                                                        tCCATGCCGGATGCGTCGCAAACCCCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCa                 <  1:2704849/93‑1 (MQ=255)
                                                                         ccATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCAt                >  2:636522/1‑93 (MQ=255)
                                                                         ccATGCCGGATGCGCCGCAACCACCTTATCCCGCCTACTCGATCGGGCAGCTTTCCAGGCGTGATAAGCGTAGCGCATCAGGCAGTTTTGCAt                <  1:168522/93‑1 (MQ=37)
                                                                          cATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCAtt               >  2:3019443/1‑93 (MQ=255)
                                                                          cATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCAtt               >  1:4061459/1‑93 (MQ=255)
                                                                          cATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCAtt               <  2:478642/93‑1 (MQ=255)
                                                                          cATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGAATCTTTCCAGGCCTGATAAGCGTTGAGCATCAGGCAGTTTTGCAtt               >  2:1260575/1‑93 (MQ=38)
                                                                           aggCCGGATGCGGCCAAAACACCTTACCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCAttt              <  1:82078/91‑1 (MQ=37)
                                                                           aTGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCAttt              >  1:3326686/1‑93 (MQ=255)
                                                                           aTGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCAttt              >  1:340782/1‑93 (MQ=255)
                                                                            tGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTg             >  1:944114/1‑93 (MQ=255)
                                                                            tGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTg             >  2:3771897/1‑93 (MQ=255)
                                                                            tGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTg             <  1:3125646/93‑1 (MQ=255)
                                                                                 gATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATc        <  1:4538870/93‑1 (MQ=255)
                                                                                       gcgcAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGt  >  1:1822603/1‑93 (MQ=255)
                                                                                          |                                                                                         
ATCATAGTCTTCCCTCAAG‑AAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGT  >  NC_000913/3099638‑3099816

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CGCATCATAGTCTTCCCTCAAG‑AAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGC  >  NC_000913/3099635‑3099820
                                                                                             |                                                                                             
CGCATCATAGTCTTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGC                                                                                               >  SRR4302535.2928695/1‑94 (MQ=60)
  CATCATAGTCTTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAA                                                                                             >  SRR4302535.279883/1‑94 (MQ=60)
  CATCATAGTCTTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAA                                                                                             <  SRR4302535.2222787/94‑1 (MQ=60)
   ATCATAGTCTTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAA                                                                                            >  SRR4302535.4369838/1‑94 (MQ=60)
   ATCATAGTCTTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAA                                                                                            >  SRR4302535.2642499/1‑94 (MQ=60)
    TCATAGTCTTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAAC                                                                                           <  SRR4302535.3506578/94‑1 (MQ=60)
     CATAGTCTTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACC                                                                                          >  SRR4302535.4325805/1‑94 (MQ=60)
      ATAGTCTTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACAC                                                                                         <  SRR4302535.617209/94‑1 (MQ=60)
      ATAGTCTTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACAC                                                                                         >  SRR4302535.2738472/1‑94 (MQ=60)
       TAGTCTTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACC                                                                                        <  SRR4302535.2273888/94‑1 (MQ=60)
       TAGTCTTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACC                                                                                        <  SRR4302535.2151557/94‑1 (MQ=60)
       TAGTCTTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACC                                                                                        >  SRR4302535.3748380/1‑94 (MQ=60)
         GTCTTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTT                                                                                      >  SRR4302535.3970576/1‑94 (MQ=60)
         GTCTTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTT                                                                                      >  SRR4302535.4573667/1‑94 (MQ=60)
          TCTTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTA                                                                                     >  SRR4302535.2626986/1‑94 (MQ=60)
          TCTTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTA                                                                                     <  SRR4302535.4229838/94‑1 (MQ=60)
          TCTTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTA                                                                                     <  SRR4302535.3536950/94‑1 (MQ=60)
           CTTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTAT                                                                                    >  SRR4302535.4230148/1‑94 (MQ=60)
           CTTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTAT                                                                                    <  SRR4302535.149779/94‑1 (MQ=60)
           CTTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTAT                                                                                    >  SRR4302535.2717852/1‑94 (MQ=60)
           CTTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTAT                                                                                    >  SRR4302535.210201/1‑94 (MQ=60)
            TTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATC                                                                                   <  SRR4302535.3559407/94‑1 (MQ=60)
              CCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCC                                                                                 >  SRR4302535.2398081/1‑94 (MQ=60)
              CCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCC                                                                                 <  SRR4302535.552950/94‑1 (MQ=60)
              CCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCC                                                                                 <  SRR4302535.2206744/94‑1 (MQ=60)
               CCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCG                                                                                >  SRR4302535.4352014/1‑94 (MQ=60)
               CCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCG                                                                                >  SRR4302535.891079/1‑94 (MQ=60)
               CCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCG                                                                                <  SRR4302535.2128408/94‑1 (MQ=60)
                CTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGC                                                                               >  SRR4302535.2399803/1‑94 (MQ=60)
                 TCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCC                                                                              >  SRR4302535.2105244/1‑94 (MQ=60)
                  CAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCT                                                                             <  SRR4302535.2641738/94‑1 (MQ=60)
                   AAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCGTA                                                                            >  SRR4302535.281013/1‑94 (MQ=60)
                   AAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTA                                                                            >  SRR4302535.659229/1‑94 (MQ=60)
                    agaAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTAC                                                                           >  SRR4302535.1117045/4‑94 (MQ=60)
                       AAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCG                                                                        <  SRR4302535.2807345/94‑1 (MQ=60)
                          AATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATC                                                                     >  SRR4302535.4564317/1‑94 (MQ=60)
                          AATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATC                                                                     >  SRR4302535.3962663/1‑94 (MQ=60)
                           ATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCG                                                                    <  SRR4302535.215191/94‑1 (MQ=60)
                           ATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCG                                                                    <  SRR4302535.1454097/94‑1 (MQ=60)
                           ATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCG                                                                    >  SRR4302535.3477505/1‑94 (MQ=60)
                            TCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGT                                                                   >  SRR4302535.2040029/1‑94 (MQ=60)
                             CAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTG                                                                  <  SRR4302535.4574718/94‑1 (MQ=60)
                              AGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGC                                                                 <  SRR4302535.3538336/94‑1 (MQ=60)
                              AGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGA                                                                 >  SRR4302535.2872484/1‑94 (MQ=60)
                               GGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCA                                                                <  SRR4302535.3679130/94‑1 (MQ=60)
                                GCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCAT                                                               <  SRR4302535.542470/94‑1 (MQ=60)
                                  CAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCT                                                             >  SRR4302535.3313481/1‑94 (MQ=60)
                                  CAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCT                                                             <  SRR4302535.2412413/94‑1 (MQ=60)
                                   AGCATTTGCGGCCCCCAGATTGATAACAAAGTACGCGTTTTCAGTGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTT                                                            <  SRR4302535.124590/94‑1 (MQ=60)
                                    GCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTT                                                           <  SRR4302535.3544405/94‑1 (MQ=60)
                                      ATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCC                                                         >  SRR4302535.620060/1‑94 (MQ=60)
                                      ATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCC                                                         >  SRR4302535.2865009/1‑94 (MQ=60)
                                      ATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCC                                                         >  SRR4302535.34723/1‑94 (MQ=60)
                                      ATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCC                                                         >  SRR4302535.4240628/1‑94 (MQ=60)
                                      ATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCC                                                         >  SRR4302535.4596558/1‑94 (MQ=60)
                                       TTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCA                                                        <  SRR4302535.3926331/94‑1 (MQ=60)
                                        TTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAG                                                       <  SRR4302535.947874/94‑1 (MQ=60)
                                             GGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTG                                                  <  SRR4302535.3588085/94‑1 (MQ=60)
                                             GGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTG                                                  >  SRR4302535.317664/1‑94 (MQ=60)
                                               CCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGAT                                                <  SRR4302535.2539049/94‑1 (MQ=60)
                                               CCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGAT                                                >  SRR4302535.2321134/1‑94 (MQ=60)
                                               CCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGAT                                                <  SRR4302535.2908820/94‑1 (MQ=60)
                                               CCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGAT                                                >  SRR4302535.2132495/1‑94 (MQ=60)
                                               CCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGAT                                                >  SRR4302535.864572/1‑94 (MQ=60)
                                                CCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATA                                               <  SRR4302535.1563953/94‑1 (MQ=60)
                                                CCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATA                                               <  SRR4302535.689078/94‑1 (MQ=60)
                                                 CCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAA                                              >  SRR4302535.2890543/1‑94 (MQ=60)
                                                  CAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAG                                             <  SRR4302535.3717410/94‑1 (MQ=60)
                                                  CAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAG                                             <  SRR4302535.4283357/94‑1 (MQ=60)
                                                  CAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAG                                             >  SRR4302535.1078515/1‑94 (MQ=60)
                                                  CAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAG                                             <  SRR4302535.1059656/94‑1 (MQ=60)
                                                   AGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGC                                            >  SRR4302535.3138747/1‑94 (MQ=60)
                                                   AGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGC                                            >  SRR4302535.3787749/1‑94 (MQ=60)
                                                   AGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGC                                            <  SRR4302535.2762725/94‑1 (MQ=60)
                                                      TTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTA                                         >  SRR4302535.1661672/1‑94 (MQ=60)
                                                       TGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAG                                        <  SRR4302535.4667993/94‑1 (MQ=60)
                                                       TGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAG                                        >  SRR4302535.2465415/1‑94 (MQ=60)
                                                       TGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAG                                        <  SRR4302535.4014586/94‑1 (MQ=60)
                                                       TGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAG                                        >  SRR4302535.694151/1‑94 (MQ=60)
                                                       TGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAG                                        <  SRR4302535.1756765/94‑1 (MQ=60)
                                                       TGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCCGATAAGCGTAG                                        <  SRR4302535.2484252/94‑1 (MQ=60)
                                                        GATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGC                                       >  SRR4302535.3674558/1‑94 (MQ=60)
                                                         ATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCG                                      >  SRR4302535.2112902/1‑94 (MQ=60)
                                                         ATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCG                                      >  SRR4302535.3387712/1‑94 (MQ=60)
                                                           AACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCA                                    >  SRR4302535.3000193/1‑94 (MQ=60)
                                                           AACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCA                                    >  SRR4302535.2369552/1‑94 (MQ=60)
                                                             CAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATC                                  >  SRR4302535.2442394/1‑94 (MQ=60)
                                                              AAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCA                                 >  SRR4302535.2878001/1‑94 (MQ=60)
                                                               AAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAG                                <  SRR4302535.4421438/94‑1 (MQ=60)
                                                               AAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAG                                >  SRR4302535.4293575/1‑94 (MQ=60)
                                                               AAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAG                                >  SRR4302535.316383/1‑94 (MQ=60)
                                                               AAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAG                                <  SRR4302535.878815/94‑1 (MQ=60)
                                                                  TACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCA                             <  SRR4302535.461951/94‑1 (MQ=60)
                                                                  TACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCA                             <  SRR4302535.3720891/94‑1 (MQ=60)
                                                                   ACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAG                            <  SRR4302535.1789043/94‑1 (MQ=60)
                                                                   ACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAG                            <  SRR4302535.599808/94‑1 (MQ=60)
                                                                    CGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGT                           >  SRR4302535.1343168/1‑94 (MQ=60)
                                                                    CGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGAAGCGCATCAGGAAGT                           >  SRR4302535.3925320/1‑94 (MQ=60)
                                                                       GTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTT                        >  SRR4302535.1896514/1‑94 (MQ=60)
                                                                       GTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTT                        <  SRR4302535.2811507/94‑1 (MQ=60)
                                                                       GTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTT                        <  SRR4302535.1286811/94‑1 (MQ=60)
                                                                       GTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTT                        >  SRR4302535.1772384/1‑94 (MQ=60)
                                                                       GTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTT                        <  SRR4302535.1763756/94‑1 (MQ=60)
                                                                       GTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTG                        >  SRR4302535.523570/1‑94 (MQ=60)
                                                                        TTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTG                       <  SRR4302535.3801368/94‑1 (MQ=60)
                                                                           TCCATGCCGGATGCGTCGCAAACCCCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCAT                    <  SRR4302535.2724178/94‑1 (MQ=60)
                                                                           TCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCAT                    <  SRR4302535.2036200/94‑1 (MQ=60)
                                                                           TCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCAT                    <  SRR4302535.2724177/94‑1 (MQ=60)
                                                                           TCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCAT                    >  SRR4302535.2892686/1‑94 (MQ=60)
                                                                            CCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATT                   >  SRR4302535.4089259/1‑94 (MQ=60)
                                                                            CCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATT                   >  SRR4302535.1447148/1‑94 (MQ=60)
                                                                            CCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATT                   >  SRR4302535.1334731/1‑94 (MQ=60)
                                                                            CCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATT                   <  SRR4302535.2842420/94‑1 (MQ=60)
                                                                            CCATGCCGGATGCGCCGCAACCACCTTATCCCGCCTACTCGATCGGGCAGCTTTCCAGGCGTGATAAGCGTAGCGCATCAGGCAGTTTTGCATT                   <  SRR4302535.169693/94‑1 (MQ=60)
                                                                             CATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTT                  >  SRR4302535.2526394/1‑94 (MQ=60)
                                                                             CATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTT                  >  SRR4302535.343145/1‑94 (MQ=60)
                                                                             CATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTT                  >  SRR4302535.3349835/1‑94 (MQ=60)
                                                                              ATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTG                 >  SRR4302535.950797/1‑94 (MQ=60)
                                                                              AGGCCGGATGCGGCCAAAACACCTTACCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTG                 <  SRR4302535.82662/94‑1 (MQ=60)
                                                                               TGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGT                <  SRR4302535.3147415/94‑1 (MQ=60)
                                                                               TGCCGGATGCGGCGAAACCACCTTACCCCGCCTACGCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGT                <  SRR4302535.4138243/94‑1 (MQ=60)
                                                                               TGCCGGATGCGGCCCAACCACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGT                <  SRR4302535.3438626/94‑1 (MQ=60)
                                                                                 CCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCA              <  SRR4302535.3676840/94‑1 (MQ=60)
                                                                                  CGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCAT             >  SRR4302535.3734511/1‑94 (MQ=60)
                                                                                  CGGATGCGCCGCAACCACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCAT             <  SRR4302535.3344547/94‑1 (MQ=60)
                                                                                  CGCATGCGGCGCAACCACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCAT             <  SRR4302535.3374384/94‑1 (MQ=60)
                                                                                   GGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATC            >  SRR4302535.713669/1‑94 (MQ=60)
                                                                                    GATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCGTCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCG           <  SRR4302535.862207/94‑1 (MQ=60)
                                                                                    GATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCG           <  SRR4302535.4569918/94‑1 (MQ=60)
                                                                                    GATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCG           <  SRR4302535.3697393/94‑1 (MQ=60)
                                                                                     ATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGC          >  SRR4302535.3463966/1‑94 (MQ=60)
                                                                                         GGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGT      >  SRR4302535.1835769/1‑94 (MQ=60)
                                                                                         GGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGT      <  SRR4302535.1188901/94‑1 (MQ=60)
                                                                                           CGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTAT    <  SRR4302535.3141208/94‑1 (MQ=60)
                                                                                           CGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTAT    >  SRR4302535.4534853/1‑94 (MQ=60)
                                                                                           CGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTAT    >  SRR4302535.4695486/1‑94 (MQ=60)
                                                                                            GCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATG   <  SRR4302535.3548543/94‑1 (MQ=60)
                                                                                            GCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATG   <  SRR4302535.3660023/94‑1 (MQ=60)
                                                                                            GCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATG   <  SRR4302535.2082805/94‑1 (MQ=60)
                                                                                             CAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGC  <  SRR4302535.3783136/94‑1 (MQ=60)
                                                                                             CAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGC  >  SRR4302535.2253839/1‑94 (MQ=60)
                                                                                             |                                                                                             
CGCATCATAGTCTTCCCTCAAG‑AAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGC  >  NC_000913/3099635‑3099820

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑