Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,125,293 |
T→C |
G248G (GGA→GGG) |
glcD ← |
glycolate oxidase subunit D |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,125,293 | 0 | T | C | 100.0%
| 465.6
/ NA
| 150 | G248G (GGA→GGG) | glcD | glycolate oxidase subunit D |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (77/73); total (77/73) |
Only 100 of 157 total aligned reads displayed.
AAAATCTTCCGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGTCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGTTTTACCGTCACTTCGGTGGTCAC > NC_000913/3125203‑3125382
|
agaaTCTCCCGCCGCGCGGATCGACAGGTTATCCATCATCTCCCGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGccc < 2:714230/91‑1 (MQ=255)
aaaaTCTTCCGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGccc > 2:1302737/1‑93 (MQ=255)
aaTCTTCCGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGTGGATAATGCCATTGGCGATGATGTCACCAACCACAAGCCCgg > 2:3873386/1‑93 (MQ=255)
aaTCTTCCGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCgg > 1:4643740/1‑93 (MQ=255)
aTCTTCCGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGc < 2:1468885/93‑1 (MQ=255)
tCTTCCGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCt > 2:3662418/1‑93 (MQ=255)
tCTTCCGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCt > 2:1773350/1‑93 (MQ=255)
cgccgcGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTc < 2:2601912/93‑1 (MQ=255)
cgccgcGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTc > 2:4478566/1‑93 (MQ=255)
gccgcGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCt < 2:4643145/93‑1 (MQ=255)
cgcgcgGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTAc < 1:1228745/93‑1 (MQ=255)
cgcgcgGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTAc > 2:4268872/1‑93 (MQ=255)
cgcgGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCg < 1:3115363/93‑1 (MQ=255)
cgcgGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCg < 1:3281143/93‑1 (MQ=255)
gcgGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGa < 1:1331254/93‑1 (MQ=255)
ggATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGCGt > 1:2085309/1‑93 (MQ=255)
ggATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGt > 1:3598851/1‑93 (MQ=255)
ggATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGt > 1:2772003/1‑93 (MQ=255)
ggATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGt < 2:1034746/93‑1 (MQ=255)
gATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTc < 1:2297640/93‑1 (MQ=255)
gATCGACAGGTTATCCATCATCCCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTc < 2:3750097/93‑1 (MQ=255)
aTCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACGAACCGCAAGCCCGGCTTTTTCTACCGAGTCa > 1:952530/1‑93 (MQ=255)
cGACAGGTTATCCATCATCTCCAGCCCGCAGGTGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCaaa < 1:232207/93‑1 (MQ=255)
gACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAg < 2:2437850/93‑1 (MQ=255)
gACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAg > 1:2218589/1‑93 (MQ=255)
gACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAg < 1:1418797/93‑1 (MQ=255)
gACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAg < 1:4303623/93‑1 (MQ=255)
aCAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGc < 2:795432/93‑1 (MQ=255)
cAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCt > 1:1535392/1‑93 (MQ=255)
gTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTgac > 2:1559311/1‑91 (MQ=255)
gTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGc > 2:3397089/1‑93 (MQ=255)
ttATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCt < 2:4355531/93‑1 (MQ=255)
ttATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCt < 1:3752414/93‑1 (MQ=255)
tATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTa > 2:1355199/1‑93 (MQ=255)
aTCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTaa > 1:4061682/1‑93 (MQ=255)
aTCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTaa < 2:189285/93‑1 (MQ=255)
tCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAAc < 1:4337568/93‑1 (MQ=255)
tCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAAc < 1:4677749/93‑1 (MQ=255)
tCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAAc > 2:3483813/1‑93 (MQ=255)
tCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAAc > 2:1906782/1‑93 (MQ=255)
ccATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACa < 1:949677/93‑1 (MQ=255)
tcatcTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGaa > 1:3049091/1‑93 (MQ=255)
tcatcTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGaa > 2:4564582/1‑93 (MQ=255)
atcTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAAcc > 2:468907/1‑93 (MQ=255)
atcTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAAcc < 2:225081/93‑1 (MQ=255)
atcTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAAcc < 1:2768480/93‑1 (MQ=255)
atcTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAAcc < 1:3924125/93‑1 (MQ=255)
tctcCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAAcct > 1:1936528/1‑92 (MQ=255)
tctcCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAAccc > 2:3207880/1‑93 (MQ=255)
ccAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCcgcc > 1:3476864/1‑92 (MQ=255)
cAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCgcgc < 2:2625699/93‑1 (MQ=255)
aGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAACGCTGGCTAACAGAACCCGCGcc > 2:1814846/1‑93 (MQ=255)
aGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGcc > 1:2845215/1‑93 (MQ=255)
gCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCa > 2:877548/1‑93 (MQ=255)
ccgccgGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAAGCCGCGCCACg > 2:2122598/1‑93 (MQ=255)
cgccgGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACgg > 2:198995/1‑93 (MQ=255)
ccgGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGggc > 2:1358263/1‑93 (MQ=255)
cgGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGggcg > 2:1592388/1‑93 (MQ=255)
gggATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGggcggc > 2:3944010/1‑93 (MQ=255)
gggATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGggcggc < 1:461889/93‑1 (MQ=255)
gggATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGggcggc < 1:622667/93‑1 (MQ=255)
gggATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGggcggc > 2:2827306/1‑93 (MQ=255)
ggATAATGCCATTGGCGATGATGTCCCCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCt < 2:1508020/93‑1 (MQ=255)
ggATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCt > 1:1204868/1‑93 (MQ=255)
gATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCtt > 1:2646712/1‑93 (MQ=255)
gATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCtt < 2:194191/93‑1 (MQ=255)
tAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCg < 2:2079119/93‑1 (MQ=255)
aTGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGgc > 2:4117989/1‑93 (MQ=255)
aTGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGgc < 2:2860480/93‑1 (MQ=255)
aTGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGgc > 2:2166744/1‑93 (MQ=255)
gCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGgcag > 2:3180924/1‑93 (MQ=255)
ccATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGgcagc < 1:77410/93‑1 (MQ=255)
ccATTGGCGATGATGTCACCAACCGCAAGCACGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGgcaga > 1:2149212/1‑92 (MQ=255)
cATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGgcagca < 2:2626467/93‑1 (MQ=255)
cATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGgcagca < 2:3044589/93‑1 (MQ=255)
cATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGgcagca < 2:2210193/93‑1 (MQ=255)
aTTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGcagcag < 1:2563254/93‑1 (MQ=255)
ttGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGcagcagc < 2:560553/93‑2 (MQ=255)
tGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGcagcagct > 2:807333/1‑91 (MQ=255)
tGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGcagcagct < 1:2585083/93‑3 (MQ=255)
tGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCAAACAGAACCCGCGCCACGGGCGGCTTCGGcagcagct < 1:3394040/93‑3 (MQ=255)
ggCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGctt < 1:999127/93‑1 (MQ=255)
gCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGcttt > 2:2751024/1‑93 (MQ=255)
gCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGcttt < 2:457429/93‑1 (MQ=255)
atgatgTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTAcc > 1:2429782/1‑93 (MQ=255)
gatgTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGt > 2:3679346/1‑93 (MQ=255)
gatgTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCGTCGGCAGCAGCTTTACCgc > 2:3346746/1‑92 (MQ=255)
atgTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTc < 1:415786/93‑1 (MQ=255)
tgTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCa > 2:67174/1‑93 (MQ=255)
tCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACt > 1:145859/1‑93 (MQ=255)
aCCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTc < 2:1578058/93‑1 (MQ=255)
aCCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTc < 2:4518957/93‑1 (MQ=255)
cAACCGGAAGCCCGGCGTTTACTACGGAGTCAAAGCTGGCTAACAGAGCCCTGGCCCCGGGCGGCTTCGGCAGCATCTTTACCGTCTCGTCgg < 2:3103442/93‑1 (MQ=255)
cAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAGCCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTCgg > 1:4612493/1‑93 (MQ=255)
aaCCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTCggt > 2:1238909/1‑93 (MQ=255)
aaCCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTCggt > 2:1148572/1‑93 (MQ=255)
aaCCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTCggg > 2:3753152/1‑92 (MQ=255)
aCCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTCggtg < 2:171016/93‑1 (MQ=255)
cGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTCggtggt < 1:836227/93‑1 (MQ=255)
gCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTCGGTGGTc > 1:3827164/1‑93 (MQ=255)
|
AAAATCTTCCGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGTCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGTTTTACCGTCACTTCGGTGGTCAC > NC_000913/3125203‑3125382
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AATAAAATCTTCCGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGTCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGTTTTACCGTCACTTCGGTGGTCACGCCG > NC_000913/3125200‑3125386
|
AATAAAATCTTCCGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGC < SRR4302535.2499860/94‑1 (MQ=60)
ATAAAATCTTCCGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCCACCGCAAGCC > SRR4302535.344883/1‑94 (MQ=60)
ATAAAATCTTCCGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACAGCAAGCC > SRR4302535.4337526/1‑94 (MQ=60)
TAAAATCTTCCGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCC < SRR4302535.2679650/94‑1 (MQ=60)
AAAATCTTCCGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCG < SRR4302535.4671615/94‑1 (MQ=60)
AAATCTTCCGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGG > SRR4302535.2657973/1‑94 (MQ=60)
AAATCTTCCGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGG > SRR4302535.4675214/1‑94 (MQ=60)
CTTCCGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTT > SRR4302535.2316330/1‑94 (MQ=60)
CGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACC < SRR4302535.1237525/94‑1 (MQ=60)
CGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGA < SRR4302535.3137053/94‑1 (MQ=60)
CGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGA < SRR4302535.3303932/94‑1 (MQ=60)
GCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAG < SRR4302535.1340752/94‑1 (MQ=60)
CGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGCGT > SRR4302535.2100327/1‑94 (MQ=60)
CGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGT > SRR4302535.2791743/1‑94 (MQ=60)
CGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGT > SRR4302535.3623826/1‑94 (MQ=60)
GATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACGAACCGCAAGCCCGGCTTTTTCTACCGAGTCA > SRR4302535.959282/1‑94 (MQ=60)
GATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCA < SRR4302535.2314082/94‑1 (MQ=60)
GATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTCTTTCTACCGAGTCA > SRR4302535.3427366/1‑94 (MQ=60)
TCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAA < SRR4302535.4142145/94‑1 (MQ=60)
CGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAG > SRR4302535.2234378/1‑94 (MQ=60)
CGACAGGTTATCCATCATCTCCAGCCCGCAGGTGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAG < SRR4302535.233810/94‑1 (MQ=60)
GACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGC < SRR4302535.4333068/94‑1 (MQ=60)
GACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGC < SRR4302535.1428927/94‑1 (MQ=60)
ACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCT > SRR4302535.1546453/1‑94 (MQ=60)
CAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTG > SRR4302535.2497035/1‑94 (MQ=60)
CAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTG > SRR4302535.2137348/1‑94 (MQ=60)
TTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTA < SRR4302535.3778383/94‑1 (MQ=60)
TATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAA > SRR4302535.4089484/1‑94 (MQ=60)
TCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACA < SRR4302535.4709315/94‑1 (MQ=60)
TCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACA < SRR4302535.4367232/94‑1 (MQ=60)
CCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAG < SRR4302535.956402/94‑1 (MQ=60)
CCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAG < SRR4302535.3089661/94‑1 (MQ=60)
ATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAA > SRR4302535.3660188/1‑94 (MQ=60)
ATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAA > SRR4302535.3070449/1‑94 (MQ=60)
TCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAAC < SRR4302535.962036/94‑1 (MQ=60)
CATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACC < SRR4302535.3343633/94‑1 (MQ=60)
ATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCT > SRR4302535.1950474/1‑94 (MQ=60)
ATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCC < SRR4302535.3950940/94‑1 (MQ=60)
ATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCC < SRR4302535.2788190/94‑1 (MQ=60)
CTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGC > SRR4302535.2208227/1‑94 (MQ=60)
TCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCC > SRR4302535.3501028/1‑94 (MQ=60)
CAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCC < SRR4302535.1594789/94‑1 (MQ=60)
CAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCC > SRR4302535.2865385/1‑94 (MQ=60)
CCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGG > SRR4302535.1322754/1‑94 (MQ=60)
CCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGG > SRR4302535.4247766/1‑94 (MQ=60)
CGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGG < SRR4302535.1441648/94‑1 (MQ=60)
CGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGG > SRR4302535.924393/1‑94 (MQ=60)
GGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCT < SRR4302535.465114/94‑1 (MQ=60)
GGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCT < SRR4302535.626992/94‑1 (MQ=60)
GGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCT > SRR4302535.1213520/1‑94 (MQ=60)
GGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTT > SRR4302535.2665670/1‑94 (MQ=60)
ATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCG > SRR4302535.76389/1‑94 (MQ=60)
GCCATTGGCGATGATGTCACCAACCGCAAGCACGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGA > SRR4302535.2164667/1‑94 (MQ=60)
CCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCA < SRR4302535.77965/94‑1 (MQ=60)
ATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGC < SRR4302535.2581702/94‑1 (MQ=60)
TTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCT > SRR4302535.2762500/1‑94 (MQ=60)
TGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTT < SRR4302535.2603648/94‑1 (MQ=60)
TGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCAAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTT < SRR4302535.3417655/94‑1 (MQ=60)
GGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTT < SRR4302535.1006213/94‑1 (MQ=60)
GCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGTCGGCTTCGGCAGCAGCTTTA < SRR4302535.2836255/94‑1 (MQ=60)
GATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACC > SRR4302535.2447288/1‑94 (MQ=60)
ATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCG > SRR4302535.3906868/1‑94 (MQ=60)
ATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCA < SRR4302535.418700/94‑1 (MQ=60)
GTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACT > SRR4302535.146875/1‑94 (MQ=60)
CCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAGCCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTCGG > SRR4302535.4643831/1‑94 (MQ=60)
CCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTCGG < SRR4302535.479671/94‑1 (MQ=60)
CCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTCGGTGGT > SRR4302535.4492579/1‑94 (MQ=60)
CGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTCGGTGGTC > SRR4302535.3853564/1‑94 (MQ=60)
CGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTCGGTGGTC < SRR4302535.842093/94‑1 (MQ=60)
GCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGGAGCAGCTTTACCGTCACTTCGGTGGTCACGCC > SRR4302535.944683/1‑94 (MQ=60)
CCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTCGGTGGTCACGCCG < SRR4302535.3265616/94‑1 (MQ=60)
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AATAAAATCTTCCGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGTCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGTTTTACCGTCACTTCGGTGGTCACGCCG > NC_000913/3125200‑3125386
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
