Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,263,328 |
T→C |
V114V (GTA→GTG) |
tdcB ← |
threonine dehydratase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,263,328 | 0 | T | C | 99.6%
| 749.8
/ ‑5.0
| 237 | V114V (GTA→GTG) | tdcB | threonine dehydratase |
| Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (119/117); total (119/118) |
| Fisher's exact test for biased strand distribution p-value = 4.98e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.91e-01 |
Only 100 of 243 total aligned reads displayed.
CATTTCGACAATTTCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCTACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCGCGCAGGAGAGGGAAACCCCTTGCGCATGGTT > NC_000913/3263238‑3263417
|
cATTTCGACAATTTCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCAc > 1:210816/1‑93 (MQ=255)
cATTTCGACAATTTCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCAc < 2:798067/93‑1 (MQ=255)
tttCGACAATTTCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACtt > 2:706717/1‑93 (MQ=255)
tttCGACAATTTCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACtt > 1:632874/1‑93 (MQ=255)
ttCGACAATTTCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACttt < 2:2571389/93‑1 (MQ=255)
cGACAATTTCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTgg < 1:3627823/93‑1 (MQ=255)
gACAATTTCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGa < 2:3128435/93‑1 (MQ=255)
aCAATTTCTCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGAt < 1:4086998/93‑1 (MQ=255)
aCAATTTCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGAt < 1:367488/93‑1 (MQ=255)
aCAATTTCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGAt > 1:575778/1‑93 (MQ=255)
aaTTTCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGAttt < 2:227663/93‑1 (MQ=255)
aaTTTCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGAttt < 1:2686900/93‑1 (MQ=255)
aTTTCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGAtttt > 2:4415604/1‑93 (MQ=255)
aTTTCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGAtttt < 1:1996962/93‑1 (MQ=255)
tttCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTg > 2:3066531/1‑93 (MQ=255)
tatCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTg > 2:4489565/3‑93 (MQ=255)
gCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGgcgc > 1:100748/1‑93 (MQ=255)
tCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCAc > 2:1004897/1‑93 (MQ=255)
ccTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCt < 1:2233717/92‑1 (MQ=255)
tttAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCttt > 1:3094863/1‑93 (MQ=255)
tttAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCttt > 1:1756971/1‑93 (MQ=255)
tttAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCttt < 1:276093/93‑1 (MQ=255)
ttAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCtttt < 2:2956631/93‑1 (MQ=255)
ttAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCtttt < 1:3328706/93‑1 (MQ=255)
ttAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGGAGTCGCACGTTGCCGCCTCTTTGGATTTTGGCGCACCtttt < 2:164830/93‑1 (MQ=255)
aGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTgg < 1:2405122/93‑1 (MQ=255)
aGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTgg > 1:4504274/1‑93 (MQ=255)
gCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTTGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGc > 1:2578323/1‑93 (MQ=255)
gCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGc > 2:3364/1‑93 (MQ=255)
gATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCAt > 1:3761861/1‑93 (MQ=255)
aTAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGTTTTTGGCGCACCTTTTGGCATc < 2:3245876/93‑1 (MQ=255)
tAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATca > 2:1372602/1‑93 (MQ=255)
aGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATcac < 2:288786/93‑1 (MQ=255)
gtgtCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATcacc > 1:771809/1‑93 (MQ=255)
gtgtCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATcacc < 1:4324063/93‑1 (MQ=255)
tgtCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATcacca < 1:444576/93‑1 (MQ=255)
tCGTGGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACt < 2:991166/93‑1 (MQ=255)
cGTTGAAGTTATCACCCTGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCGCTTTGGATTTTGGCGCACCTTTTGGCATCACCACtt > 2:4569692/1‑93 (MQ=255)
gTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCTACTTTGGATTTTGGCGCACCTTTTGGCATCACCACttt < 1:1448501/93‑1 (MQ=255)
gTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACttt < 1:1740116/93‑1 (MQ=255)
gTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACttt < 2:131216/93‑1 (MQ=255)
gTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCATTTGGCATCACCACttt > 1:1281273/1‑93 (MQ=255)
ttGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTa < 1:1856608/93‑1 (MQ=255)
tGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTAc > 2:2676647/1‑93 (MQ=255)
gAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTAcc < 1:4554960/93‑1 (MQ=255)
gAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTAcc < 2:2039555/93‑1 (MQ=255)
gAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTAcc < 2:1095500/93‑1 (MQ=255)
aaGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCg < 2:1931033/93‑1 (MQ=255)
aGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGt > 1:2614855/1‑93 (MQ=255)
ttATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCg > 1:3150170/1‑93 (MQ=255)
tATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGa < 1:1014065/93‑1 (MQ=255)
aTCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGAt > 2:3692726/1‑93 (MQ=255)
cACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATAc < 2:1215606/93‑1 (MQ=255)
cACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATAc > 2:2975651/1‑93 (MQ=255)
cccATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATAcc < 2:916013/92‑1 (MQ=255)
aCCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATAcc > 2:725943/1‑93 (MQ=255)
aCCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATAcc > 2:3098950/1‑93 (MQ=255)
aCCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATAcc > 1:1621368/1‑93 (MQ=255)
aCCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATAcc > 2:2933123/1‑93 (MQ=255)
aCCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATAcc > 2:2318291/1‑93 (MQ=255)
ccATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATAccc > 1:385244/1‑93 (MQ=255)
cATGCAGAACTCCTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCa < 1:1561592/93‑1 (MQ=255)
cATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCa < 2:3546937/93‑1 (MQ=255)
aTGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAg > 2:4013777/1‑93 (MQ=255)
tGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGc > 1:3493427/1‑93 (MQ=255)
gCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCa < 2:844622/93‑1 (MQ=255)
cAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCAt < 2:3332570/93‑1 (MQ=255)
aGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATc > 2:241618/1‑93 (MQ=255)
aGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATc < 2:3896624/93‑1 (MQ=255)
aGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATc > 1:2648190/1‑93 (MQ=255)
aGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATc < 2:3612748/93‑1 (MQ=255)
gAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATcg > 1:1362830/1‑93 (MQ=255)
aCGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATcgcg > 2:4236270/1‑93 (MQ=255)
cGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCgcgc < 2:4126447/93‑1 (MQ=255)
gACTTCGGCGGAGTAGTCGCACGTTGCCGCCACTTTTGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCGCGCa < 1:3099723/93‑1 (MQ=255)
aCTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCGCGCAg < 2:2021215/93‑1 (MQ=255)
aCTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCGCGCAg > 2:561326/1‑93 (MQ=255)
cTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCGCGCAgg < 1:934666/93‑1 (MQ=255)
cTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCGCGCAgg > 1:4048922/1‑93 (MQ=255)
tGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCGCGCAGGagag > 1:2801972/1‑93 (MQ=255)
tGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCGCGCAGGagag < 2:2289397/93‑1 (MQ=255)
tGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCGCGCAGGagag < 2:4050074/93‑1 (MQ=255)
gggAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCGCGCAGGAGAggg < 1:75158/92‑1 (MQ=255)
ggtagtCGCCGGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCGCGCAGGAGAGGGaaa < 1:1081170/92‑1 (MQ=255)
gtagtCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCGCGCAGGAGAGGGAAAc > 2:3778796/1‑93 (MQ=255)
gtCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCGCGCAGGAGAGGGAAAcccc > 1:2925835/1‑93 (MQ=255)
gtCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCGCGCAGGAGAGGGAAAcccc < 1:2707265/93‑1 (MQ=255)
gtCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGCCGATACCCAGCATAGCGCAGGAGTGGGAAAcccc > 2:1165400/1‑93 (MQ=255)
tCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCGCGCAGGAGAGGGAAACCCCt < 1:1249533/93‑1 (MQ=255)
tCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCGCGCAGGAGAGGGAAACCCCt < 2:1633393/93‑1 (MQ=255)
cACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCGCGCAGGAGAGGGAAACCCCTTgc > 2:3164515/1‑93 (MQ=255)
cACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCGCGCAGGAGAGGGAAACCCCTTgc > 2:1892419/1‑93 (MQ=255)
cACGTGTCCGCCACTGTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCGCGCAGGAGAGGGAAACCCCTTgc < 1:2320136/93‑1 (MQ=255)
atgTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCGCGCAGGAGAGGGAAACCCCTTgcg > 2:4667445/3‑93 (MQ=255)
aCGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCGCGCAGGAGAGGGAAACCCCTTgcg > 2:1542330/1‑93 (MQ=255)
aCGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCGCGCAGGAGAGGGAAACCCCTTgcg > 1:1129677/1‑93 (MQ=255)
gTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCGCGCAGGAGAGGGAAACCCCTTGCGCa > 1:1763862/1‑93 (MQ=255)
tGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCGCGCAGGAGAGGGAAACCCCTTGCGCATg < 1:2152875/93‑1 (MQ=255)
gccgccACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCGCGCAGGAGAGGGAAACCCCTTGCGCATgg < 1:2047233/93‑1 (MQ=255)
ccGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCGCGCAGGAGAGGGAAACCCCTTGCGCATGGt < 1:4565319/93‑1 (MQ=255)
|
CATTTCGACAATTTCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCTACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCGCGCAGGAGAGGGAAACCCCTTGCGCATGGTT > NC_000913/3263238‑3263417
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TTCCATTTCGACAATTTCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCTACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCGCGCAGGAGAGGGAAACCCCTTGCGCATGGTTGCCC > NC_000913/3263235‑3263421
|
TTCCATTTCGACAATTTCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCC > SRR4302535.3851282/1‑94 (MQ=60)
TCCATTTCGACAATTTCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCA > SRR4302535.3489190/1‑94 (MQ=60)
TCCATTTCGACAATTTCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCA > SRR4302535.226909/1‑94 (MQ=60)
TCCATTTCGACAATTTCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCA > SRR4302535.3856125/1‑94 (MQ=60)
CCATTTCGACAATTTCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCAC > SRR4302535.212266/1‑94 (MQ=60)
CATTTCGACAATTTCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACT < SRR4302535.3668744/94‑1 (MQ=60)
ATTTCGACAATTTCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTT > SRR4302535.4570310/1‑94 (MQ=60)
ATTTCGACAATTTCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTT > SRR4302535.637282/1‑94 (MQ=60)
TTCGACAATTTCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTG < SRR4302535.1648870/94‑1 (MQ=60)
TTCGACAATTTCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTG < SRR4302535.4037386/94‑1 (MQ=60)
CGACAATTTCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGA < SRR4302535.3652967/94‑1 (MQ=60)
GACAATTTCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGAT < SRR4302535.1730102/94‑1 (MQ=60)
GACAATTTCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGAT < SRR4302535.2165421/94‑1 (MQ=60)
GACAATTTCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGAT > SRR4302535.3705739/1‑94 (MQ=60)
GACAATTTCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGAT > SRR4302535.579821/1‑94 (MQ=60)
ACAATTTCTCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATT < SRR4302535.4114961/94‑1 (MQ=60)
ACAATTTCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATT < SRR4302535.370027/94‑1 (MQ=60)
ACAATTTCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATT < SRR4302535.937027/94‑1 (MQ=60)
CAATTTCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTT > SRR4302535.2719024/1‑94 (MQ=60)
AATTTCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTT < SRR4302535.2706110/94‑1 (MQ=60)
AATTTCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTT < SRR4302535.1573799/94‑1 (MQ=60)
ATTTCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTG < SRR4302535.1390820/94‑1 (MQ=60)
ATTTCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTG < SRR4302535.2011338/94‑1 (MQ=60)
TTTCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGG < SRR4302535.4387412/94‑1 (MQ=60)
TTTCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGG < SRR4302535.2516260/94‑1 (MQ=60)
TTTCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGG < SRR4302535.724869/94‑1 (MQ=60)
TTCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGC < SRR4302535.2194211/94‑1 (MQ=60)
TTCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGC < SRR4302535.311905/94‑1 (MQ=60)
TTCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGC > SRR4302535.3169432/1‑94 (MQ=60)
CGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGC > SRR4302535.2639420/1‑94 (MQ=60)
CGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGC > SRR4302535.101458/1‑94 (MQ=60)
CTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCAC > SRR4302535.2560988/1‑94 (MQ=60)
CTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCAC > SRR4302535.1938695/1‑94 (MQ=60)
CTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCAC > SRR4302535.1097870/1‑94 (MQ=60)
CCTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTT < SRR4302535.2249603/94‑1 (MQ=60)
CTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTT > SRR4302535.3116413/1‑94 (MQ=60)
CTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTT > SRR4302535.1769673/1‑94 (MQ=60)
TTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTT < SRR4302535.278019/94‑1 (MQ=60)
TTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTT < SRR4302535.768827/94‑1 (MQ=60)
TTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTG < SRR4302535.3351863/94‑1 (MQ=60)
TAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGG > SRR4302535.4535201/1‑94 (MQ=60)
AGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTTGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGC > SRR4302535.2596850/1‑94 (MQ=60)
AGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGC < SRR4302535.2422431/94‑1 (MQ=60)
AGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGC > SRR4302535.3367143/1‑94 (MQ=60)
CGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCAT > SRR4302535.3787856/1‑94 (MQ=60)
CGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCAT < SRR4302535.2901108/94‑1 (MQ=60)
GATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATC > SRR4302535.1939949/1‑94 (MQ=60)
ATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCA < SRR4302535.891600/94‑1 (MQ=60)
ATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCA > SRR4302535.659922/1‑94 (MQ=60)
AGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACC > SRR4302535.777241/1‑94 (MQ=60)
GTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCA < SRR4302535.4353640/94‑1 (MQ=60)
TGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCAC < SRR4302535.447685/94‑1 (MQ=60)
GTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACT > SRR4302535.570577/1‑94 (MQ=60)
TCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTT < SRR4302535.3588996/94‑1 (MQ=60)
CGTTGAAGTTATCACCATGCAGAACGACTTCTGCTGAGTAGTCGCGCGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTT < SRR4302535.2924293/94‑1 (MQ=60)
CGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTT < SRR4302535.3166524/94‑1 (MQ=60)
CGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCATTTGGCATCACCACTTT > SRR4302535.1290417/1‑94 (MQ=60)
GTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCTACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTA < SRR4302535.1458857/94‑1 (MQ=60)
GTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTA < SRR4302535.3884232/94‑1 (MQ=60)
GTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTA < SRR4302535.1752691/94‑1 (MQ=60)
GTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTA > SRR4302535.1767588/1‑94 (MQ=60)
GTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTA < SRR4302535.2951623/94‑1 (MQ=60)
GTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTA > SRR4302535.177358/1‑94 (MQ=60)
TTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTAC < SRR4302535.1770841/94‑1 (MQ=60)
TTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTAC < SRR4302535.1869979/94‑1 (MQ=60)
TGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACC > SRR4302535.2696952/1‑94 (MQ=60)
TGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACC > SRR4302535.2012319/1‑94 (MQ=60)
GAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCG < SRR4302535.4586073/94‑1 (MQ=60)
AAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGT < SRR4302535.1860420/94‑1 (MQ=60)
AAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGT > SRR4302535.2633607/1‑94 (MQ=60)
AGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTC > SRR4302535.1049886/1‑94 (MQ=60)
GTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCG > SRR4302535.3172065/1‑94 (MQ=60)
TATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGAT < SRR4302535.1021274/94‑1 (MQ=60)
ATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATA < SRR4302535.2256241/94‑1 (MQ=60)
TCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATAC < SRR4302535.209579/94‑1 (MQ=60)
CACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGTATTTTGGCGCACCTTTTGGCATCAGCACTTTACCGTCGATACC > SRR4302535.964404/1‑94 (MQ=60)
CACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACC > SRR4302535.3181270/1‑94 (MQ=60)
CACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACC > SRR4302535.468851/1‑94 (MQ=60)
CACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACC > SRR4302535.1633067/1‑94 (MQ=60)
ACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCC > SRR4302535.387919/1‑94 (MQ=60)
ACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCC > SRR4302535.2779021/1‑94 (MQ=60)
CCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCA > SRR4302535.43478/1‑94 (MQ=60)
CATGCAGAACTCCTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAG < SRR4302535.1572846/94‑1 (MQ=60)
CATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACGCAG > SRR4302535.1472475/1‑94 (MQ=60)
CATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAG > SRR4302535.2738111/1‑94 (MQ=60)
ATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGC > SRR4302535.3517705/1‑94 (MQ=60)
CAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATC > SRR4302535.2667158/1‑94 (MQ=60)
AGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCG > SRR4302535.1372575/1‑94 (MQ=60)
AACGCCTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCGCG < SRR4302535.4532504/94‑1 (MQ=60)
AACGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCGCG > SRR4302535.1019826/1‑94 (MQ=60)
CGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCGCGCA > SRR4302535.3499354/1‑94 (MQ=60)
CGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCGCGCA > SRR4302535.4595716/1‑94 (MQ=60)
CGACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCGCGCA < SRR4302535.3687369/94‑1 (MQ=60)
GACTTCGGCGGAGTAGTCGCACGTTGCCGCCACTTTTGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCGCGCAG < SRR4302535.3121306/94‑1 (MQ=60)
ACTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCGCGCAGG > SRR4302535.4076640/1‑94 (MQ=60)
CTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCGCGCAGGA < SRR4302535.941284/94‑1 (MQ=60)
CTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCGCGCAGGA < SRR4302535.1286521/94‑1 (MQ=60)
CTTCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCGCGAAGGA > SRR4302535.1149436/1‑94 (MQ=60)
TCTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCGCGCAGGAGA < SRR4302535.613452/94‑1 (MQ=60)
CTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCGCGCAGGAGAG < SRR4302535.2347774/94‑1 (MQ=60)
CTGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCGCGCAGGAGAG > SRR4302535.2821900/1‑94 (MQ=60)
TGCGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCGCGCAGGAGAGG < SRR4302535.2785793/94‑1 (MQ=60)
GGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCGCGCAGGAGAGGGA < SRR4302535.75707/94‑1 (MQ=60)
CGGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCGCGCAGGAGAGGGA > SRR4302535.2295074/1‑94 (MQ=60)
GGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCGCGCAGGAGAGGGAA < SRR4302535.4530729/94‑1 (MQ=60)
GGAGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCGCGCAGGAGAGGGAA < SRR4302535.2619255/94‑1 (MQ=60)
GGTAGTCGCCGGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCGCGCAGGAGAGGGAAAC < SRR4302535.1088861/94‑1 (MQ=60)
AGTAGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCGCGCAGGAGAGGGAAAC < SRR4302535.2163699/94‑1 (MQ=60)
AGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCGCGCAGGAGAGGGAAACCCC > SRR4302535.2946461/1‑94 (MQ=60)
AGTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCGCGCAGGAGAGGGAAACCCC > SRR4302535.1404419/1‑94 (MQ=60)
GTCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCGCGCAGGAGAGGGAAACCCCT < SRR4302535.2726610/94‑1 (MQ=60)
TCGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCGCGCAGGAGAGGGAAACCCCTT < SRR4302535.1258453/94‑1 (MQ=60)
CGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCGCGCAGGAGAGGGAAACCCCTTG > SRR4302535.1335169/1‑94 (MQ=60)
CGCACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCGCGCAGGAGAGGGAAACCCCTTG > SRR4302535.1289711/1‑94 (MQ=60)
CACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCGCGCAGGAGAGGGAAACCCCTTGCG > SRR4302535.1137741/1‑94 (MQ=60)
CACGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCGCGCAGGAGAGGGAAACCCCTTGCG > SRR4302535.4088171/1‑94 (MQ=60)
CACGTGTCCGCCACTGTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCGCGCAGGAGAGGGAAACCCCTTGCG < SRR4302535.2336742/94‑1 (MQ=60)
CGTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCGCGCAGGAGAGGGAAACCCCTTGCGCA > SRR4302535.1776643/1‑94 (MQ=60)
GTTGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCGCGCAGGAGAGGGAAACCCCTTGCGCAT > SRR4302535.1115351/1‑94 (MQ=60)
TGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCGCGCAGGAGAGGGAAACCCCTTGCGCATGG < SRR4302535.2168350/94‑1 (MQ=60)
TGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCGCGCAGGAGAGGGAAACCCCTTGCGCATGG < SRR4302535.3822646/94‑1 (MQ=60)
TGCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCGCGCAGGAGAGGGAAACCCCTTGCGCATGG < SRR4302535.416158/94‑1 (MQ=60)
GCCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCGCGCAGGAGAGGGAAACCCCTTGCGCATGGT < SRR4302535.2061973/94‑1 (MQ=60)
CCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCGCGCAGGAGAGGGAAACCCCTTGCGCATGGTT < SRR4302535.4596467/94‑1 (MQ=60)
CCGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCGCGCAGGAGAGGGAAACCCCTTGCGCATGGTT < SRR4302535.2691811/94‑1 (MQ=60)
CGCCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCGCGCAGGAGAGGGAAACCCCTTGCGCATGGTTG > SRR4302535.3669289/1‑94 (MQ=60)
CCACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCGCGCAGGAGAGGGAAACCCCTTGCGCATGGTTGCC > SRR4302535.3709240/1‑94 (MQ=60)
CACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCGCGCAGGAGAGGGAAACCCCTTGCGCATGGTTGCCC < SRR4302535.4644507/94‑1 (MQ=60)
|
TTCCATTTCGACAATTTCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCTACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTTACCGTCGATACCCAGCATCGCGCAGGAGAGGGAAACCCCTTGCGCATGGTTGCCC > NC_000913/3263235‑3263421
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
