Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1696 279.3 15874187 97.8% 15524954 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,266,308 T→C S85P (TCT→CCT)  yhaC → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,266,3080TC99.6% 865.5 / ‑5.1 273S85P (TCT→CCT) yhaChypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (0/1);  new base C (165/107);  total (165/108)
Fisher's exact test for biased strand distribution p-value = 3.96e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.18e-01

Only 100 of 296 total aligned reads displayed.

ACGTTACAACCTGGTGGAAAATGCATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGTCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATTAATGAACCGTTAAAA  >  NC_000913/3266218‑3266397
                                                                                          |                                                                                         
  gTTACAACCTGGTGGAAAATGCATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCctct                                                                                       <  1:2089028/93‑1 (MQ=255)
    tACAACCTGGTGGAAAATGCATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTc                                                                                     <  1:4464489/93‑1 (MQ=255)
       aaCCTGGTGGAAAATGCATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTc                                                                                  >  1:1489423/1‑93 (MQ=255)
       aaCCTGGTGGAAAATGCATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTc                                                                                  >  1:3484428/1‑93 (MQ=255)
        aCCTGGTGGAAAATGCATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCt                                                                                 <  1:1714422/93‑1 (MQ=255)
        aCCTGGTGGAAAATGCATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCt                                                                                 <  1:5082991/93‑1 (MQ=255)
        aCCTGGTGGAAAATGCATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCt                                                                                 <  1:280402/93‑1 (MQ=255)
         ccTGGTGGAAAATGCATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTg                                                                                >  1:3169662/1‑93 (MQ=255)
           tggtggAAAATGCATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGa                                                                              <  1:6212096/93‑1 (MQ=255)
            ggtggAAAATGCATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGAt                                                                             <  2:760181/93‑1 (MQ=255)
              tggAAAATGCATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGAttt                                                                           >  2:3257605/1‑93 (MQ=255)
              tggAAAATGCATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGAttt                                                                           >  1:7800329/1‑93 (MQ=255)
               ggAAAATGCATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGAtttt                                                                          >  2:1608997/1‑93 (MQ=255)
                 aaaaTGCATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGAtttttt                                                                        >  1:683123/1‑93 (MQ=255)
                  aaaTGCATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTa                                                                       <  2:7803290/93‑1 (MQ=255)
                  aaaTGCATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTa                                                                       <  2:3665976/93‑1 (MQ=255)
                   aaTGCATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAg                                                                      >  1:3679469/1‑93 (MQ=255)
                   aaTGCATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCCTCTCTTCGTCTGGATTTTTTAg                                                                      >  1:6533284/1‑93 (MQ=255)
                    aTGCATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAgg                                                                     >  1:4251378/1‑93 (MQ=255)
                    aTGCATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAgg                                                                     <  2:6718105/93‑1 (MQ=255)
                    aTGCATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAgg                                                                     >  2:5216944/1‑93 (MQ=255)
                      gCATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGtt                                                                   >  2:5461218/1‑93 (MQ=255)
                       cATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTta                                                                  <  1:3391007/93‑1 (MQ=255)
                         ttATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTtata                                                                >  2:2546995/1‑93 (MQ=255)
                         ttATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTtata                                                                >  1:1283474/1‑93 (MQ=255)
                         ttATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTtata                                                                >  2:5811267/1‑93 (MQ=255)
                         ttAGCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTtata                                                                >  2:1080166/1‑93 (MQ=255)
                          tATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATaa                                                               >  1:358968/1‑93 (MQ=255)
                           aTCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAAc                                                              <  2:3361135/93‑1 (MQ=255)
                                 ggTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCaa                                                        <  2:4339624/93‑1 (MQ=255)
                                    gATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAatt                                                     <  2:2367121/93‑1 (MQ=255)
                                     aTTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAatta                                                    >  2:6248874/1‑93 (MQ=255)
                                     aTTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAatta                                                    <  1:3010486/93‑1 (MQ=255)
                                       tttCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAattatt                                                  <  1:531257/93‑1 (MQ=255)
                                        ttCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTc                                                 >  1:4827755/1‑93 (MQ=255)
                                        ttCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTc                                                 <  1:2663372/93‑1 (MQ=255)
                                         tCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCa                                                >  2:4143443/1‑93 (MQ=255)
                                         tCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCa                                                <  2:6369752/93‑1 (MQ=255)
                                         tCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCa                                                >  2:3416522/1‑93 (MQ=255)
                                          cAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCaa                                               <  2:5318663/93‑1 (MQ=255)
                                           aaaaaGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAAc                                              <  2:2586186/93‑1 (MQ=255)
                                            aaaaGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACg                                             <  2:2737198/93‑1 (MQ=255)
                                             aaaGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGa                                            >  1:5999384/1‑93 (MQ=255)
                                             aaaGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGa                                            <  2:6568875/93‑1 (MQ=255)
                                             aaaGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGa                                            <  1:7705674/93‑1 (MQ=255)
                                              aaGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGAt                                           >  1:4078795/1‑93 (MQ=255)
                                                gAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCg                                         >  2:3841016/1‑93 (MQ=255)
                                                gAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCg                                         <  1:4053629/93‑1 (MQ=255)
                                                gAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCg                                         >  1:3819722/1‑93 (MQ=255)
                                                 aaTTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCgg                                        >  2:1953397/1‑93 (MQ=255)
                                                  aTTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGa                                       <  1:860954/93‑1 (MQ=255)
                                                  aTTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGa                                       >  1:5863504/1‑93 (MQ=255)
                                                   ttAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGAc                                      >  2:7182877/1‑93 (MQ=255)
                                                       cGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATa                                  >  1:2335421/1‑93 (MQ=255)
                                                        gTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATAc                                 <  2:7461932/93‑1 (MQ=255)
                                                         tACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACt                                >  1:405018/1‑93 (MQ=255)
                                                         tACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACt                                >  2:7155686/1‑93 (MQ=255)
                                                         tACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACt                                >  1:4980389/1‑93 (MQ=255)
                                                          aCTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACtt                               >  1:5381643/1‑93 (MQ=255)
                                                           cTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTtg                              >  1:2610681/1‑93 (MQ=255)
                                                            ttACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTtgt                             <  2:4305772/93‑1 (MQ=255)
                                                             tACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTCGATTTTTTACGTTATAACGCCCAAATTATTCCACGATCGGGCAATACTtgtg                            >  2:5360060/1‑93 (MQ=255)
                                                              aCAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGa                           >  1:1180644/1‑93 (MQ=255)
                                                               cAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGaa                          <  2:180766/93‑1 (MQ=255)
                                                               cAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGaa                          >  2:1227592/1‑93 (MQ=255)
                                                               cAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGaa                          >  2:4249463/1‑93 (MQ=255)
                                                                aaaaTGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAAc                         >  2:245301/1‑93 (MQ=255)
                                                                 aaaTGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACt                        >  1:330195/1‑93 (MQ=255)
                                                                   aTGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTa                      >  2:5636828/1‑93 (MQ=255)
                                                                   aTGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTa                      <  1:562390/93‑1 (MQ=255)
                                                                   aTGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTa                      >  2:7432855/1‑93 (MQ=255)
                                                                    tGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTAc                     >  1:1954688/1‑93 (MQ=255)
                                                                    agTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTAc                     <  2:6473365/92‑1 (MQ=255)
                                                                     gTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGGCCAAATTATTCAACGATCGCACAATACTTGTGAACTTAcc                    >  1:7055122/1‑93 (MQ=255)
                                                                     gTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTAcc                    <  1:7022777/93‑1 (MQ=255)
                                                                      tAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAACTTATTCAACGATCGGACAATACTTGTGCACTTACCa                   >  1:5969270/1‑93 (MQ=255)
                                                                      tAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCa                   >  1:1087873/1‑93 (MQ=255)
                                                                         ttCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATTa                >  2:7081621/1‑93 (MQ=255)
                                                                         ttCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATTa                >  2:1302906/1‑93 (MQ=255)
                                                                           cTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATTAAt              <  2:3391255/93‑1 (MQ=255)
                                                                           cTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATTAAt              <  2:3114387/93‑1 (MQ=255)
                                                                             ttATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATTAATGa            <  2:4441682/93‑1 (MQ=255)
                                                                             ttATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAAATATTCAACCATCGGACAATACTTTTGTACTTACCATTAATGa            >  1:7146970/1‑93 (MQ=255)
                                                                              tataATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATTAATGaa           <  2:398604/93‑1 (MQ=255)
                                                                               ataATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATTAATGAAc          <  1:395682/93‑1 (MQ=255)
                                                                                taATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATTAATGAAcc         <  1:7556372/93‑1 (MQ=255)
                                                                                taATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATTAATGAAcc         >  1:7464377/1‑93 (MQ=255)
                                                                                  aTGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATTAATGAACCGt       <  2:4624071/93‑1 (MQ=255)
                                                                                  aTGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATTAATGAACCGt       >  1:224393/1‑93 (MQ=255)
                                                                                   tGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATTAATGAACCGtt      <  1:1561107/93‑1 (MQ=255)
                                                                                   tGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATTAATGAACCGtt      >  2:278346/1‑93 (MQ=255)
                                                                                   tGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATTAATGAAACGtt      >  2:6079842/1‑93 (MQ=255)
                                                                                     tctcgcctcTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATTAATGAACCGTTaa    >  2:7291274/1‑93 (MQ=255)
                                                                                     tctcgcctcTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATTAATGAACCGTTaa    <  2:4857009/93‑1 (MQ=255)
                                                                                     tctcgcctcTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATTAATGAACCGTTaa    >  2:2161464/1‑93 (MQ=255)
                                                                                      ctcgcctcTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATTAATGAACCGTTaaa   <  1:2436226/93‑1 (MQ=255)
                                                                                      ctcgcctcTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATTAATGAACCGTTaaa   <  1:7364411/93‑1 (MQ=255)
                                                                                      ctcgcctcTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATTAATGAACCGTTaaa   >  1:1001732/1‑93 (MQ=255)
                                                                                       tcgcctcTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATTAATGAACCGTTaaaa  >  1:7244368/1‑93 (MQ=255)
                                                                                       tcgcctcTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATTAATGAACCGTTaaaa  <  2:909728/93‑1 (MQ=255)
                                                                                          |                                                                                         
ACGTTACAACCTGGTGGAAAATGCATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGTCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATTAATGAACCGTTAAAA  >  NC_000913/3266218‑3266397

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AACACGTTACAACCTGGTGGAAAATGCATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGTCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATTAATGAACCGTTAAAAAACC  >  NC_000913/3266215‑3266401
                                                                                             |                                                                                             
AACACGTTACAACCTGGTGGAAAATGCATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGC                                                                                               >  SRR4302543.7924364/1‑94 (MQ=60)
AACACGTTACAACCTGGTGGAAAATGCATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGC                                                                                               >  SRR4302543.2070866/1‑94 (MQ=60)
 ACACGTTACAACCTGGTGGAAAATGCATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATATCTCGCC                                                                                              >  SRR4302543.2279012/1‑94 (MQ=60)
  CACGTTACAACCTGGTGGAAAATGCATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCT                                                                                             >  SRR4302543.3201565/1‑94 (MQ=60)
  CACGTTACAACCTGGTGGAAAATGCATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCT                                                                                             >  SRR4302543.7215614/1‑94 (MQ=60)
     GTTACAACCTGGTGGAAAATGCATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTT                                                                                          >  SRR4302543.5487170/1‑94 (MQ=60)
     GTTACAACCTGGTGGAAAATGCATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTT                                                                                          <  SRR4302543.2107694/94‑1 (MQ=60)
      TTACAACCTGGTGGAAAATGCATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTC                                                                                         >  SRR4302543.3668424/1‑94 (MQ=60)
       TACAACCTGGTGGAAAATGCATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCG                                                                                        <  SRR4302543.4504951/94‑1 (MQ=60)
       TACAACCTGGTGGAAAATGCATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCG                                                                                        <  SRR4302543.6047209/94‑1 (MQ=60)
        ACAACCTGGTGGAAAATGCATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGT                                                                                       <  SRR4302543.1609306/94‑1 (MQ=60)
         CGACCTGGTGGAAAATGCATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTC                                                                                      >  SRR4302543.1561941/1‑94 (MQ=60)
         CAACCTGGTGGAAAATGCATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTC                                                                                      >  SRR4302543.3515632/1‑94 (MQ=60)
         CAACCTGGTGGAAAATGCATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTC                                                                                      >  SRR4302543.1502825/1‑94 (MQ=60)
          AACCTGGTGGAAAATGCATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCT                                                                                     >  SRR4302543.2372488/1‑94 (MQ=60)
           ACCTGGTGGAAAATGCATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTG                                                                                    <  SRR4302543.282887/94‑1 (MQ=60)
           ACCTGGTGGAAAATGCATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTG                                                                                    <  SRR4302543.5129082/94‑1 (MQ=60)
           ACCTGGTGGAAAATGCATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTG                                                                                    >  SRR4302543.3618776/1‑94 (MQ=60)
           ACCTGGTGGAAAATGCATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTG                                                                                    >  SRR4302543.3198209/1‑94 (MQ=60)
           ACCTGGTGGAAAATGCATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTG                                                                                    <  SRR4302543.1729745/94‑1 (MQ=60)
           ACCTGGTGGAAAATGCATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTG                                                                                    <  SRR4302543.3093959/94‑1 (MQ=60)
              TGGTGGAAAATGCATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGAT                                                                                 <  SRR4302543.6270750/94‑1 (MQ=60)
              TGGTGGAAAATGCATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGAT                                                                                 >  SRR4302543.2635515/1‑94 (MQ=60)
                GTGGAAAATGCATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTT                                                                               >  SRR4302543.7873848/1‑94 (MQ=60)
                   GAAAATGCATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTT                                                                            >  SRR4302543.689425/1‑94 (MQ=60)
                    AAAATGCATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTA                                                                           >  SRR4302543.2421334/1‑94 (MQ=60)
                     AAATGCATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAG                                                                          <  SRR4302543.4088817/94‑1 (MQ=60)
                     AAATGCATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAG                                                                          >  SRR4302543.3711789/1‑94 (MQ=60)
                     AAATGCATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAG                                                                          >  SRR4302543.5947314/1‑94 (MQ=60)
                     AAATGCATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAG                                                                          >  SRR4302543.4513465/1‑94 (MQ=60)
                     AAATGCATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAG                                                                          <  SRR4302543.4091885/94‑1 (MQ=60)
                     AAATGCATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCCTCTCTTCGTCTGGATTTTTTAG                                                                          >  SRR4302543.6594791/1‑94 (MQ=60)
                      AATGCATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGG                                                                         >  SRR4302543.4289964/1‑94 (MQ=60)
                      AATGCATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGG                                                                         <  SRR4302543.535014/94‑1 (MQ=60)
                       ATGCATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGT                                                                        >  SRR4302543.6902243/1‑94 (MQ=60)
                         GCATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTA                                                                      <  SRR4302543.3386079/94‑1 (MQ=60)
                          CATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTAT                                                                     >  SRR4302543.7386393/1‑94 (MQ=60)
                          CATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTAT                                                                     <  SRR4302543.3421412/94‑1 (MQ=60)
                          CATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTAT                                                                     <  SRR4302543.3421411/94‑1 (MQ=60)
                           ATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATA                                                                    >  SRR4302543.3442146/1‑94 (MQ=60)
                           ATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATA                                                                    >  SRR4302543.5392671/1‑94 (MQ=60)
                           ATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATA                                                                    >  SRR4302543.7251065/1‑94 (MQ=60)
                           ATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATA                                                                    >  SRR4302543.1294917/1‑94 (MQ=60)
                           ATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATA                                                                    >  SRR4302543.1538824/1‑94 (MQ=60)
                            TTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAA                                                                   >  SRR4302543.362287/1‑94 (MQ=60)
                            TTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAA                                                                   >  SRR4302543.362286/1‑94 (MQ=60)
                            TTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAA                                                                   <  SRR4302543.1991297/94‑1 (MQ=60)
                              ATCACTGGTGATTTTCTAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACG                                                                 <  SRR4302543.7106043/94‑1 (MQ=60)
                               TCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGC                                                                >  SRR4302543.5001746/1‑94 (MQ=60)
                                CACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCC                                                               <  SRR4302543.6024225/94‑1 (MQ=60)
                                CACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCC                                                               >  SRR4302543.736812/1‑94 (MQ=60)
                                 ACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCC                                                              >  SRR4302543.1245278/1‑94 (MQ=60)
                                  CTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCA                                                             >  SRR4302543.2960538/1‑94 (MQ=60)
                                  CTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCA                                                             <  SRR4302543.5047032/94‑1 (MQ=60)
                                   TGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAA                                                            >  SRR4302543.5220385/1‑94 (MQ=60)
                                    GGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAA                                                           <  SRR4302543.6504206/94‑1 (MQ=60)
                                     GTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAAT                                                          >  SRR4302543.3915141/1‑94 (MQ=60)
                                      TGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATT                                                         <  SRR4302543.5393356/94‑1 (MQ=60)
                                      TGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATT                                                         >  SRR4302543.1164425/1‑94 (MQ=60)
                                        ATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTAT                                                       <  SRR4302543.3037750/94‑1 (MQ=60)
                                        ATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTAT                                                       <  SRR4302543.5073383/94‑1 (MQ=60)
                                          TTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTC                                                     >  SRR4302543.4871806/1‑94 (MQ=60)
                                          TTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTC                                                     <  SRR4302543.536180/94‑1 (MQ=60)
                                           TTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCA                                                    >  SRR4302543.1089195/1‑94 (MQ=60)
                                           TTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCA                                                    <  SRR4302543.2687522/94‑1 (MQ=60)
                                            TCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAA                                                   >  SRR4302543.3291751/1‑94 (MQ=60)
                                             CAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGTCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAAC                                                  <  SRR4302543.7728224/94‑1 (MQ=60)
                                             CAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAAC                                                  <  SRR4302543.4720493/94‑1 (MQ=60)
                                               AAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGA                                                >  SRR4302543.7758235/1‑94 (MQ=60)
                                               AAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGA                                                >  SRR4302543.6054474/1‑94 (MQ=60)
                                                AAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGAT                                               <  SRR4302543.7778575/94‑1 (MQ=60)
                                                AAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGAT                                               >  SRR4302543.4115359/1‑94 (MQ=60)
                                                  AGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCG                                             >  SRR4302543.122304/1‑94 (MQ=60)
                                                  AGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCG                                             >  SRR4302543.3853405/1‑94 (MQ=60)
                                                   GAATTAGCGTTCTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATTGG                                            <  SRR4302543.4089906/94‑1 (MQ=60)
                                                   GAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGG                                            >  SRR4302543.1436763/1‑94 (MQ=60)
                                                   GAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGG                                            <  SRR4302543.4089907/94‑1 (MQ=60)
                                                    AATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGA                                           >  SRR4302543.5916872/1‑94 (MQ=60)
                                                     ATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGAC                                          <  SRR4302543.868625/94‑1 (MQ=60)
                                                     ATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGAC                                          >  SRR4302543.5582229/1‑94 (MQ=60)
                                                     ATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGAC                                          <  SRR4302543.7527320/94‑1 (MQ=60)
                                                        AGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAAT                                       >  SRR4302543.4446298/1‑94 (MQ=60)
                                                         GCGTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATA                                      >  SRR4302543.2356612/1‑94 (MQ=60)
                                                           GTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACT                                    >  SRR4302543.5025725/1‑94 (MQ=60)
                                                           GTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACT                                    <  SRR4302543.618749/94‑1 (MQ=60)
                                                           GTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACT                                    >  SRR4302543.3381283/1‑94 (MQ=60)
                                                           GTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACT                                    >  SRR4302543.3799700/1‑94 (MQ=60)
                                                           GTACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACT                                    >  SRR4302543.408755/1‑94 (MQ=60)
                                                            TAGTTACAAAATGTAAGTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTT                                   <  SRR4302543.852654/94‑1 (MQ=60)
                                                            TACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTT                                   >  SRR4302543.5430475/1‑94 (MQ=60)
                                                             ACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAACTTATTCAACGATCGGACAATACTTG                                  >  SRR4302543.6776475/1‑94 (MQ=60)
                                                             ACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTG                                  <  SRR4302543.4002470/94‑1 (MQ=60)
                                                             ACTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTG                                  >  SRR4302543.2634378/1‑94 (MQ=60)
                                                              CTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGT                                 <  SRR4302543.7243897/94‑1 (MQ=60)
                                                              CTTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGT                                 <  SRR4302543.2752411/94‑1 (MQ=60)
                                                               TTACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTG                                <  SRR4302543.7899395/94‑1 (MQ=60)
                                                                TACAAAATGTAATTCTTTATAGTGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGA                               >  SRR4302543.7468325/1‑94 (MQ=60)
                                                                TACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGA                               >  SRR4302543.2683306/1‑94 (MQ=60)
                                                                TACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGA                               <  SRR4302543.4166393/94‑1 (MQ=60)
                                                                TACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGA                               >  SRR4302543.1191325/1‑94 (MQ=60)
                                                                 ACAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAA                              <  SRR4302543.6090675/94‑1 (MQ=60)
                                                                  CAAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAAC                             >  SRR4302543.2572671/1‑94 (MQ=60)
                                                                   AAAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACT                            >  SRR4302543.333216/1‑94 (MQ=60)
                                                                    AAATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTT                           >  SRR4302543.4282054/1‑94 (MQ=60)
                                                                      ATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTAC                         >  SRR4302543.7002397/1‑94 (MQ=60)
                                                                      ATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTAC                         <  SRR4302543.4330155/94‑1 (MQ=60)
                                                                      ATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTAC                         <  SRR4302543.4000022/94‑1 (MQ=60)
                                                                      ATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTAC                         >  SRR4302543.1972219/1‑94 (MQ=60)
                                                                      ATGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTAC                         <  SRR4302543.567545/94‑1 (MQ=60)
                                                                       TGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGGCCAAATTATTCAACGATCGCACAATACTTGTGAACTTACC                        >  SRR4302543.7123588/1‑94 (MQ=60)
                                                                       TGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACC                        >  SRR4302543.2754622/1‑94 (MQ=60)
                                                                       TGTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACC                        >  SRR4302543.7123587/1‑94 (MQ=60)
                                                                        GTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAACTTATTCAACGATCGGACAATACTTGTGCACTTACCA                       >  SRR4302543.6023931/1‑94 (MQ=60)
                                                                        GTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCA                       <  SRR4302543.7090069/94‑1 (MQ=60)
                                                                        GTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCA                       >  SRR4302543.1097646/1‑94 (MQ=60)
                                                                        GTAATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCA                       >  SRR4302543.6023930/1‑94 (MQ=60)
                                                                          AATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATT                     >  SRR4302543.1165506/1‑94 (MQ=60)
                                                                           ATTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATTA                    >  SRR4302543.1764740/1‑94 (MQ=60)
                                                                            TTCTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATTAA                   >  SRR4302543.5751336/1‑94 (MQ=60)
                                                                              CTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATTAATG                 >  SRR4302543.7614172/1‑94 (MQ=60)
                                                                              CTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATTAATG                 >  SRR4302543.3630697/1‑94 (MQ=60)
                                                                              CTTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATTAATG                 <  SRR4302543.1340870/94‑1 (MQ=60)
                                                                               TTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATTAATGA                <  SRR4302543.2570234/94‑1 (MQ=60)
                                                                               TTTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAAATATTCAACCATCGGACAATACTTTTGTACTTACCATTAATGA                >  SRR4302543.7216437/1‑94 (MQ=60)
                                                                                TTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATTAATGAA               >  SRR4302543.3878038/1‑94 (MQ=60)
                                                                                TTATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATTAATGAA               >  SRR4302543.3722080/1‑94 (MQ=60)
                                                                                 TATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATTAATGAAC              >  SRR4302543.7596456/1‑94 (MQ=60)
                                                                                 TATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATTAATGAAC              >  SRR4302543.6867032/1‑94 (MQ=60)
                                                                                 TATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACACCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATTAATGAAC              >  SRR4302543.2193219/1‑94 (MQ=60)
                                                                                  ATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATTAATGAACC             >  SRR4302543.7837836/1‑94 (MQ=60)
                                                                                  ATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATTAATGAACC             >  SRR4302543.7535884/1‑94 (MQ=60)
                                                                                  ATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATTAATGAACC             >  SRR4302543.1581069/1‑94 (MQ=60)
                                                                                  ATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATTAATGAACC             <  SRR4302543.2832651/94‑1 (MQ=60)
                                                                                  ATAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATTAATGAACC             <  SRR4302543.399337/94‑1 (MQ=60)
                                                                                   TAATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATTAATGAACCG            <  SRR4302543.7628322/94‑1 (MQ=60)
                                                                                    AATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATTAATGAACCGT           >  SRR4302543.2067582/1‑94 (MQ=60)
                                                                                    AATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATTAATGAACCGT           >  SRR4302543.4955141/1‑94 (MQ=60)
                                                                                    AATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATTAATGAACCGT           >  SRR4302543.226330/1‑94 (MQ=60)
                                                                                    AATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATAATTGTGAACTTACCATTAATGAACCGT           >  SRR4302543.1730300/1‑94 (MQ=60)
                                                                                     ATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATTAATGAACCGTT          <  SRR4302543.6383847/94‑1 (MQ=60)
                                                                                     ATGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATTAATGAACCGTT          >  SRR4302543.7200822/1‑94 (MQ=60)
                                                                                      TGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATTAATGAACCGTTA         <  SRR4302543.1575046/94‑1 (MQ=60)
                                                                                      TGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATTAATGAACCGTTA         >  SRR4302543.2343142/1‑94 (MQ=60)
                                                                                      TGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATTAATGAACCGTTA         >  SRR4302543.2343143/1‑94 (MQ=60)
                                                                                      TGTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATTAATGAACCGTTA         <  SRR4302543.3096150/94‑1 (MQ=60)
                                                                                       GTCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATTAATGAACCGTTAA        <  SRR4302543.7806276/94‑1 (MQ=60)
                                                                                        TCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATTAATGAACCGTTAAA       >  SRR4302543.1010580/1‑94 (MQ=60)
                                                                                        TCTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATTAATGAACCGTTAAA       <  SRR4302543.5783240/94‑1 (MQ=60)
                                                                                         CTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATTAATGAACCGTTAAAA      >  SRR4302543.7314465/1‑94 (MQ=60)
                                                                                         CTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATTAATGAACCGTTAAAA      <  SRR4302543.7435225/94‑1 (MQ=60)
                                                                                         CTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATTAATGAACCGTTAAAA      <  SRR4302543.2458200/94‑1 (MQ=60)
                                                                                         CTCGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATTAATGAACCGTTAAAA      <  SRR4302543.2224636/94‑1 (MQ=60)
                                                                                           CGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATTAATGAACCGTTAAAAAA    <  SRR4302543.937759/94‑1 (MQ=60)
                                                                                           CGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATTAATGAACCGTTAAAAAA    >  SRR4302543.5295807/1‑94 (MQ=60)
                                                                                           CGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATTAATGAACCGTTAAAAAA    >  SRR4302543.374867/1‑94 (MQ=60)
                                                                                           CGCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATTAATGAACAGTTAAAAAA    >  SRR4302543.374866/1‑94 (MQ=60)
                                                                                           CGCCTCTTCGTCTGGATTATTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATTAATGAACCGTTAAAAAA    <  SRR4302543.2865392/94‑1 (MQ=60)
                                                                                            GCCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATTAATGAACCGTTAAAAAAC   >  SRR4302543.4268174/1‑94 (MQ=60)
                                                                                             CCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATTAATGAACCGTTAAAAAACC  >  SRR4302543.5083474/1‑94 (MQ=60)
                                                                                             CCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATTAATGAACCGTTAAAAAACC  >  SRR4302543.6258730/1‑94 (MQ=60)
                                                                                             CCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATTAATGAACCGTTAAAAAACC  <  SRR4302543.4276687/94‑1 (MQ=60)
                                                                                             CCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATTAATGAACCGTTAAAAAACC  <  SRR4302543.1603121/94‑1 (MQ=60)
                                                                                             |                                                                                             
AACACGTTACAACCTGGTGGAAAATGCATTATCACTGGTGATTTTCAAAAAGAATTAGCGTACTTACAAAATGTAATTCTTTATAATGTCTCGTCTCTTCGTCTGGATTTTTTAGGTTATAACGCCCAAATTATTCAACGATCGGACAATACTTGTGAACTTACCATTAATGAACCGTTAAAAAACC  >  NC_000913/3266215‑3266401

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑