Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,698,466	A→G	N92S (AAC→AGC)	yhjV →	putative transporter protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,698,466	0	A	G	99.6%	728.5 / NA	228	N92S (AAC→AGC)	yhjV	putative transporter protein
Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (116/111); minor base T (0/1); total (116/112)
Fisher's exact test for biased strand distribution p-value = 4.91e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 235 total aligned reads displayed.

GGGTAGTGCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAACTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGACAGCGCCT  >  NC_000913/3698376‑3698555

gggTAGTGCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCt                                                                                         <  2:1629832/93‑1 (MQ=255)

 ggTAGTGCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTg                                                                                        >  1:1507110/1‑93 (MQ=255)

     gTGCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGa                                                                                    <  1:3584312/93‑1 (MQ=255)

      tGCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGaa                                                                                   <  2:3320108/93‑1 (MQ=255)

      tGCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGaa                                                                                   <  1:4263195/93‑1 (MQ=255)

       gCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAAt                                                                                  >  2:397981/1‑93 (MQ=255)

       gCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAAt                                                                                  >  2:1089130/1‑93 (MQ=255)

       gCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAAt                                                                                  >  2:1137457/1‑93 (MQ=255)

          ggACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAAtttt                                                                               >  1:3828109/1‑93 (MQ=255)

            aCATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTcc                                                                             <  1:366994/93‑1 (MQ=255)

            aCATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTcc                                                                             <  2:183441/93‑1 (MQ=255)

             cATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCt                                                                            <  1:1807106/93‑1 (MQ=255)

              atttatttAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTc                                                                           >  1:2485315/1‑93 (MQ=255)

              atttatttAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTc                                                                           <  1:2184776/93‑1 (MQ=255)

               tttatttaAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCg                                                                          <  1:3336137/93‑1 (MQ=255)

                ttatttaAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCgg                                                                         <  2:1516420/93‑1 (MQ=255)

                ttatttaAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCgg                                                                         <  1:1642506/93‑1 (MQ=255)

                ttatttaAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCgg                                                                         <  1:3894505/93‑1 (MQ=255)

                 tatttaAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCggg                                                                        >  2:3075407/1‑93 (MQ=255)

                 tatttaAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCggg                                                                        <  1:3644896/93‑1 (MQ=255)

                  atttaAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCgggg                                                                       >  1:2326781/1‑93 (MQ=255)

                  atttaAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCgggg                                                                       <  1:2415230/93‑1 (MQ=255)

                  atttaAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCgggg                                                                       <  2:3652853/93‑1 (MQ=255)

                     taAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTa                                                                    <  1:60326/93‑1 (MQ=255)

                     taAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTa                                                                    <  2:2310324/93‑1 (MQ=255)

                      aaaaaCCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTAt                                                                   <  1:353992/93‑1 (MQ=255)

                       aaaaCCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATc                                                                  <  2:1917630/93‑1 (MQ=255)

                       aaaaCCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATc                                                                  <  2:961684/93‑1 (MQ=255)

                       aaaaCCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATc                                                                  <  1:746413/93‑1 (MQ=255)

                        aaaCCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCt                                                                 >  2:2003/1‑93 (MQ=255)

                         aaCCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTa                                                                >  2:276137/1‑93 (MQ=255)

                         aaCCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTa                                                                >  1:2301169/1‑93 (MQ=255)

                          aCCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTAc                                                               <  2:509047/93‑1 (MQ=255)

                          aCCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTAc                                                               <  2:2981037/93‑1 (MQ=255)

                           cccTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACt                                                              <  2:1674290/93‑1 (MQ=255)

                            ccTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACtt                                                             <  2:1557925/93‑1 (MQ=255)

                            ccTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACtt                                                             >  2:3923899/1‑93 (MQ=255)

                             cTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACttt                                                            >  2:2130589/1‑93 (MQ=255)

                              tttCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACtttt                                                           >  2:2739755/1‑93 (MQ=255)

                              tttCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACtttt                                                           >  1:118655/1‑93 (MQ=255)

                              tttCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACtttt                                                           >  1:4212781/1‑93 (MQ=255)

                               ttCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACttttt                                                          >  1:1435265/1‑93 (MQ=255)

                               ttCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACttttt                                                          <  1:4547668/93‑1 (MQ=255)

                                  tGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTtgat                                                       >  2:326212/1‑93 (MQ=255)

                                   gAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTtgatg                                                      >  1:3521748/1‑93 (MQ=255)

                                     aaGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTgatgat                                                    <  1:4571103/93‑1 (MQ=255)

                                     aaGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTgatgat                                                    >  1:105319/1‑93 (MQ=255)

                                      aGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTCCTTTTTGATGAtt                                                   <  2:2067444/93‑1 (MQ=255)

                                      aGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGAtt                                                   <  2:193959/93‑1 (MQ=255)

                                      aGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGAtt                                                   <  1:3915584/93‑1 (MQ=255)

                                       gCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTa                                                  <  2:3432957/93‑1 (MQ=255)

                                         gATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATc                                                <  1:973350/93‑1 (MQ=255)

                                            tCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCAc                                             >  1:1992603/1‑93 (MQ=255)

                                             ccTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACg                                            <  1:4660497/93‑1 (MQ=255)

                                             ccTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACg                                            <  1:2044942/93‑1 (MQ=255)

                                             ccTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACg                                            >  1:2583533/1‑93 (MQ=255)

                                              cTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTTCTTTTTGATGATTATCCACgg                                           <  1:2718675/93‑1 (MQ=255)

                                              cTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACgg                                           >  2:2728809/1‑93 (MQ=255)

                                              cTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACgg                                           >  2:1385940/1‑93 (MQ=255)

                                              cTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACgg                                           <  2:3203955/93‑1 (MQ=255)

                                              cTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACgg                                           <  1:4488328/93‑1 (MQ=255)

                                              cTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACgg                                           >  1:1223407/1‑93 (MQ=255)

                                               tGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACggg                                          >  1:2982507/1‑93 (MQ=255)

                                               tGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACggg                                          <  1:865710/93‑1 (MQ=255)

                                               tGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACggg                                          >  2:4473431/1‑93 (MQ=255)

                                                gTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGa                                         >  1:2595813/1‑93 (MQ=255)

                                                 tAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGAt                                        >  1:3718168/1‑93 (MQ=255)

                                                    tGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGAtttt                                     <  2:3175814/93‑1 (MQ=255)

                                                     gACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGAttttt                                    >  1:2346846/1‑93 (MQ=255)

                                                      aCTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTa                                   <  1:1738612/93‑1 (MQ=255)

                                                      aCTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTa                                   <  2:459498/93‑1 (MQ=255)

                                                       cTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTAt                                  >  2:436660/1‑93 (MQ=255)

                                                       cTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTAt                                  >  2:3368950/1‑93 (MQ=255)

                                                        tACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATc                                 <  1:1135719/93‑1 (MQ=255)

                                                        tACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATc                                 <  1:470931/93‑1 (MQ=255)

                                                          cacCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTa                               >  2:4194018/1‑93 (MQ=255)

                                                          cacCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTa                               <  1:4269247/93‑1 (MQ=255)

                                                            ccGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTAct                             >  2:813824/1‑93 (MQ=255)

                                                             cGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTActc                            >  1:3038299/1‑93 (MQ=255)

                                                             cGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTActc                            >  2:1309113/1‑93 (MQ=255)

                                                              gATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTActct                           >  1:1408685/1‑93 (MQ=255)

                                                               atatTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTActctc                          <  2:635024/93‑1 (MQ=255)

                                                               atatTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTActctc                          <  1:50487/93‑1 (MQ=255)

                                                                tattatCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTActctct                         <  2:2863291/93‑1 (MQ=255)

                                                                tattatCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTActctct                         <  1:3205537/93‑1 (MQ=255)

                                                                tattatCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTActctct                         <  1:3961412/93‑1 (MQ=255)

                                                                tattatCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTActctct                         <  1:1324715/93‑1 (MQ=255)

                                                                     tCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATTTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCg                    >  1:3123759/1‑93 (MQ=255)

                                                                     tCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCg                    >  2:1461807/1‑93 (MQ=255)

                                                                       aGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTg                  <  2:4278528/93‑1 (MQ=255)

                                                                       aGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTg                  >  2:2609114/1‑93 (MQ=255)

                                                                          cATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGtt               >  2:4138713/1‑93 (MQ=255)

                                                                           aTTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGttt              >  1:3988553/1‑93 (MQ=255)

                                                                             tACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTc            <  1:1234641/93‑1 (MQ=255)

                                                                              aCCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCg           >  1:2922068/1‑93 (MQ=255)

                                                                                 tGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGACa        <  2:2284271/93‑1 (MQ=255)

                                                                                  ggggAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGACAg       >  2:1208624/1‑93 (MQ=255)

                                                                                   gggAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGACAgc      >  2:3599112/1‑93 (MQ=255)

                                                                                   gcgaagagCTGGGGAATTTTCCTGGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTGCTCTCTCTCCGTGGTTTTCGACAgc      <  2:683176/91‑1 (MQ=255)

                                                                                       agagCTGGCGAAGATTCCTCGGGGTTATCTCCTTTTAGATGATTATCCACGGTATTTTTATCTACTCTCGCTCCGTGGTTTTCGACAGCGCCt  <  2:4657670/93‑1 (MQ=255)

GGGTAGTGCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAACTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGACAGCGCCT  >  NC_000913/3698376‑3698555

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CCTGGGTAGTGCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAACTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGACAGCGCCTCGTA  >  NC_000913/3698373‑3698559

CCTGGGTAGTGCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAG                                                                                               <  SRR4302535.1131727/94‑1 (MQ=60)

   GGGTAGTGCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTG                                                                                            >  SRR4302535.1517946/1‑94 (MQ=60)

    GGTAGTGCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGG                                                                                           <  SRR4302535.256294/94‑1 (MQ=60)

       AGTGCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGA                                                                                        >  SRR4302535.547355/1‑94 (MQ=60)

        GTGCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAA                                                                                       <  SRR4302535.3609171/94‑1 (MQ=60)

        GTGCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAA                                                                                       >  SRR4302535.3367624/1‑94 (MQ=60)

        GTGCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAA                                                                                       <  SRR4302535.2671546/94‑1 (MQ=60)

         TGCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAAT                                                                                      <  SRR4302535.4651280/94‑1 (MQ=60)

         TGCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAAT                                                                                      <  SRR4302535.4292390/94‑1 (MQ=60)

          GCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATT                                                                                     >  SRR4302535.2394994/1‑94 (MQ=60)

           CAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTT                                                                                    >  SRR4302535.624978/1‑94 (MQ=60)

            AGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTT                                                                                   >  SRR4302535.2376527/1‑94 (MQ=60)

            AGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTT                                                                                   >  SRR4302535.3854515/1‑94 (MQ=60)

            AGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTT                                                                                   >  SRR4302535.4001757/1‑94 (MQ=60)

               ACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCT                                                                                <  SRR4302535.369525/94‑1 (MQ=60)

                CATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTC                                                                               <  SRR4302535.1820160/94‑1 (MQ=60)

                CATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTC                                                                               >  SRR4302535.2503232/1‑94 (MQ=60)

                 ATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCG                                                                              <  SRR4302535.2200351/94‑1 (MQ=60)

                  TTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGG                                                                             <  SRR4302535.3359370/94‑1 (MQ=60)

                  TTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGG                                                                             >  SRR4302535.2156810/1‑94 (MQ=60)

                   TTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGG                                                                            <  SRR4302535.3921200/94‑1 (MQ=60)

                   TTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGG                                                                            <  SRR4302535.1654379/94‑1 (MQ=60)

                    TATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGCCTAAACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGATTTTTCATCGGGT                                                                           >  SRR4302535.3815078/1‑94 (MQ=60)

                    TATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGG                                                                           <  SRR4302535.234328/94‑1 (MQ=60)

                    TATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGG                                                                           <  SRR4302535.3670139/94‑1 (MQ=60)

                    TATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGG                                                                           >  SRR4302535.2343429/1‑94 (MQ=60)

                     ATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGT                                                                          <  SRR4302535.2432619/94‑1 (MQ=60)

                     ATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGT                                                                          <  SRR4302535.1638121/94‑1 (MQ=60)

                      TTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTT                                                                         >  SRR4302535.2330456/1‑94 (MQ=60)

                        TAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTAT                                                                       <  SRR4302535.60773/94‑1 (MQ=60)

                        TAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTAT                                                                       >  SRR4302535.3109242/1‑94 (MQ=60)

                        TAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTAT                                                                       >  SRR4302535.2970334/1‑94 (MQ=60)

                         AAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATC                                                                      >  SRR4302535.3610424/1‑94 (MQ=60)

                         AAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATC                                                                      <  SRR4302535.356436/94‑1 (MQ=60)

                         AAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATC                                                                      >  SRR4302535.1609260/1‑94 (MQ=60)

                          AAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCT                                                                     <  SRR4302535.751663/94‑1 (MQ=60)

                           AAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTA                                                                    >  SRR4302535.2317640/1‑94 (MQ=60)

                             ACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACT                                                                  <  SRR4302535.2201563/94‑1 (MQ=60)

                              CCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTT                                                                 <  SRR4302535.870524/94‑1 (MQ=60)

                                CTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTT                                                               >  SRR4302535.4241614/1‑94 (MQ=60)

                                CTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTT                                                               >  SRR4302535.4486416/1‑94 (MQ=60)

                                CTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTT                                                               <  SRR4302535.1494567/94‑1 (MQ=60)

                                CTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTT                                                               >  SRR4302535.119486/1‑94 (MQ=60)

                                 TTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTT                                                              >  SRR4302535.1445516/1‑94 (MQ=60)

                                  TTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTG                                                             <  SRR4302535.4578761/94‑1 (MQ=60)

                                  TTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTG                                                             >  SRR4302535.4250230/1‑94 (MQ=60)

                                  GTCTGAAAGCGATTCCTGTAATGTCTACACCGATATTATCAGTCATATCCTGGGGAAGAGCTGGGGAATGTTTCTCGGGGTTATCTACTTGTTG                                                             >  SRR4302535.4712006/1‑94 (MQ=60)

                                   TCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGA                                                            >  SRR4302535.4471163/1‑94 (MQ=60)

                                    CTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGAT                                                           <  SRR4302535.875162/94‑1 (MQ=60)

                                    CTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGAT                                                           <  SRR4302535.2488379/94‑1 (MQ=60)

                                     TGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATG                                                          >  SRR4302535.3546207/1‑94 (MQ=60)

                                       AAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGAT                                                        >  SRR4302535.106066/1‑94 (MQ=60)

                                       AAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCGGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGAT                                                        <  SRR4302535.413945/94‑1 (MQ=60)

                                        AAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATT                                                       >  SRR4302535.3699380/1‑94 (MQ=60)

                                        AAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATT                                                       <  SRR4302535.4602269/94‑1 (MQ=60)

                                         AGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTA                                                      <  SRR4302535.3942377/94‑1 (MQ=60)

                                          GCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTAT                                                     <  SRR4302535.387206/94‑1 (MQ=60)

                                           CGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATC                                                    >  SRR4302535.1107082/1‑94 (MQ=60)

                                            GATTCCTGTAATGACTACACCGATATTATCAGTCGTTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCC                                                   >  SRR4302535.4599626/1‑94 (MQ=60)

                                            GATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCC                                                   <  SRR4302535.980259/94‑1 (MQ=60)

                                            GATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCC                                                   <  SRR4302535.368432/94‑1 (MQ=60)

                                             ATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCA                                                  <  SRR4302535.1238983/94‑1 (MQ=60)

                                             ATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCA                                                  >  SRR4302535.3964527/1‑94 (MQ=60)

                                              TTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCAC                                                 >  SRR4302535.2006949/1‑94 (MQ=60)

                                               TCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACG                                                >  SRR4302535.2602094/1‑94 (MQ=60)

                                               TCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACG                                                <  SRR4302535.1438005/94‑1 (MQ=60)

                                                CCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGG                                               <  SRR4302535.4692019/94‑1 (MQ=60)

                                                CCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGG                                               >  SRR4302535.1232163/1‑94 (MQ=60)

                                                CCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGG                                               <  SRR4302535.2059672/94‑1 (MQ=60)

                                                CCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGG                                               >  SRR4302535.2283566/1‑94 (MQ=60)

                                                 CTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTTCTTTTTGATGATTATCCACGGG                                              <  SRR4302535.2738091/94‑1 (MQ=60)

                                                 CTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGG                                              >  SRR4302535.3003427/1‑94 (MQ=60)

                                                 CTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGG                                              <  SRR4302535.4519139/94‑1 (MQ=60)

                                                 CTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGG                                              <  SRR4302535.4298389/94‑1 (MQ=60)

                                                  TGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGA                                             <  SRR4302535.871826/94‑1 (MQ=60)

                                                  TGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGA                                             >  SRR4302535.2614460/1‑94 (MQ=60)

                                                   GTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGAT                                            >  SRR4302535.3743929/1‑94 (MQ=60)

                                                   GTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGAT                                            <  SRR4302535.3167911/94‑1 (MQ=60)

                                                   GTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGAT                                            <  SRR4302535.2814610/94‑1 (MQ=60)

                                                   GTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGAT                                            <  SRR4302535.3130669/94‑1 (MQ=60)

                                                    TAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATT                                           <  SRR4302535.2804267/94‑1 (MQ=60)

                                                    TAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATT                                           >  SRR4302535.3050687/1‑94 (MQ=60)

                                                     AATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTT                                          >  SRR4302535.1364569/1‑94 (MQ=60)

                                                     AATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTT                                          <  SRR4302535.3773789/94‑1 (MQ=60)

                                                       TGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTT                                        >  SRR4302535.2363668/1‑94 (MQ=60)

                                                         ACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTAT                                      <  SRR4302535.1751178/94‑1 (MQ=60)

                                                           TACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCT                                    <  SRR4302535.1143819/94‑1 (MQ=60)

                                                           TACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCT                                    >  SRR4302535.2604275/1‑94 (MQ=60)

                                                           TACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCT                                    <  SRR4302535.474227/94‑1 (MQ=60)

                                                            ACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTA                                   <  SRR4302535.4135208/94‑1 (MQ=60)

                                                             CACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTAC                                  >  SRR4302535.3947528/1‑94 (MQ=60)

                                                             CACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTAC                                  <  SRR4302535.4298478/94‑1 (MQ=60)

                                                              ACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACT                                 <  SRR4302535.1882370/94‑1 (MQ=60)

                                                              ACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACT                                 >  SRR4302535.4568092/1‑94 (MQ=60)

                                                               CCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTC                                >  SRR4302535.3059580/1‑94 (MQ=60)

                                                                CGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCT                               >  SRR4302535.1418747/1‑94 (MQ=60)

                                                                CGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCT                               <  SRR4302535.3487051/94‑1 (MQ=60)

                                                                  ATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCT                             <  SRR4302535.50860/94‑1 (MQ=60)

                                                                   TATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTC                            <  SRR4302535.1334172/94‑1 (MQ=60)

                                                                   TATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTC                            <  SRR4302535.3988465/94‑1 (MQ=60)

                                                                   TATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTC                            <  SRR4302535.3227737/94‑1 (MQ=60)

                                                                    ATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCT                           >  SRR4302535.1206232/1‑94 (MQ=60)

                                                                       ATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATTTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCG                        >  SRR4302535.3145514/1‑94 (MQ=60)

                                                                            TCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTT                   >  SRR4302535.1737160/1‑94 (MQ=60)

                                                                             CATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTT                  >  SRR4302535.1193367/1‑94 (MQ=60)

                                                                             CATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTT                  >  SRR4302535.4015830/1‑94 (MQ=60)

                                                                              ATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTT                 <  SRR4302535.4651758/94‑1 (MQ=60)

                                                                              ATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTT                 >  SRR4302535.1772168/1‑94 (MQ=60)

                                                                                TACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCG               <  SRR4302535.1243464/94‑1 (MQ=60)

                                                                                TACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCG               <  SRR4302535.3316832/94‑1 (MQ=60)

                                                                                TACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCG               >  SRR4302535.2942679/1‑94 (MQ=60)

                                                                                 ACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGA              >  SRR4302535.1218535/1‑94 (MQ=60)

                                                                                  CCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGAC             >  SRR4302535.3574204/1‑94 (MQ=60)

                                                                                  CCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGAC             <  SRR4302535.355113/94‑1 (MQ=60)

                                                                                  CCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGAC             <  SRR4302535.3925469/94‑1 (MQ=60)

                                                                                   CTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGACA            >  SRR4302535.1978176/1‑94 (MQ=60)

                                                                                   CTGGGGAAGAGCTGGGGAATTTTCCTCGGGGGTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGACA            >  SRR4302535.991032/1‑94 (MQ=60)

                                                                                    TGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGACAG           >  SRR4302535.558693/1‑94 (MQ=60)

                                                                                    TGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGACAG           <  SRR4302535.138730/94‑1 (MQ=60)

                                                                                      GGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTATTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGACAGCG         <  SRR4302535.924475/94‑1 (MQ=60)

                                                                                      GGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGACAGCG         >  SRR4302535.3650661/1‑94 (MQ=60)

                                                                                       GGAAGATCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGACAGCGC        <  SRR4302535.485997/94‑1 (MQ=60)

                                                                                         AAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGACAGCGCCT      <  SRR4302535.205456/94‑1 (MQ=60)

                                                                                          AGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGACAGCGCCTC     >  SRR4302535.84647/1‑94 (MQ=60)

                                                                                          AGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGACAGCGCCTC     <  SRR4302535.2589612/94‑1 (MQ=60)

                                                                                           GAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGACAGCGCCTCG    <  SRR4302535.3562969/94‑1 (MQ=60)

                                                                                            AGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGACAGCGCCTCGT   >  SRR4302535.1715544/1‑94 (MQ=60)

                                                                                             GCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACCCTCTCTCCGTGGTTTTCGACAGCGCCTCGTA  <  SRR4302535.2445162/94‑1 (MQ=60)

CCTGGGTAGTGCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAACTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGACAGCGCCTCGTA  >  NC_000913/3698373‑3698559

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`