Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,828,674 |
T→C |
T197T (ACT→ACC) |
yicH → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,828,674 | 0 | T | C | 100.0%
| 879.2
/ NA
| 273 | T197T (ACT→ACC) | yicH | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (183/90); total (183/90) |
Only 100 of 280 total aligned reads displayed.
GTTTAGTGCCGGATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCAT > NC_000913/3828584‑3828763
|
gTTTAGTGCCGGATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCaa > 1:66479/1‑93 (MQ=255)
gTTTAGTGCCGGATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCaa < 2:1681359/93‑1 (MQ=255)
tttAGTGCCGGATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAAc > 2:4198605/1‑93 (MQ=255)
tttAGTGCCGGATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAAc > 2:3299403/1‑93 (MQ=255)
ttAGTGCCGGATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAAcc > 1:2933853/1‑93 (MQ=255)
ttAGTGCCGGATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAAcc < 2:189508/93‑1 (MQ=255)
gTGCCGGATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTgg > 1:3056438/1‑93 (MQ=255)
gTGCCGGATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTgg > 2:2733578/1‑93 (MQ=255)
cGGATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGc > 1:1867349/1‑93 (MQ=255)
cGGATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGGGc > 1:2652171/1‑93 (MQ=255)
gATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGGCg > 2:2284485/1‑93 (MQ=255)
aTCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGa > 2:210871/1‑93 (MQ=255)
aTCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGa > 1:1964949/1‑93 (MQ=255)
tCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGAc > 1:425077/1‑93 (MQ=255)
tCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGAc > 2:4425654/1‑93 (MQ=255)
tCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGAc > 2:968259/1‑93 (MQ=255)
cGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGACa < 1:825556/93‑1 (MQ=255)
gCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGCCCAACCTGGGTGCCGACAt > 2:1427324/1‑93 (MQ=255)
gCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGACAt > 2:4525680/1‑93 (MQ=255)
cTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGACATc > 1:2990909/1‑93 (MQ=255)
ttCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGACATCGc > 1:2871570/1‑93 (MQ=255)
tCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGACATCGcc < 2:4263328/93‑1 (MQ=255)
tCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGACATCGCCcgcg > 2:3598101/1‑93 (MQ=255)
aaTGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCggg > 2:3398513/1‑93 (MQ=255)
tgatgTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGAc > 1:472474/1‑93 (MQ=255)
tgatgTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGAc < 1:3873081/93‑1 (MQ=255)
gatgTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGACa > 1:524540/1‑93 (MQ=255)
tgTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGACAtt > 1:581698/1‑93 (MQ=255)
tgTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGACAtt > 1:2300915/1‑93 (MQ=255)
gTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGACATTa > 1:159059/1‑93 (MQ=255)
gTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGACATTa > 1:3586537/1‑93 (MQ=255)
tCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGACATTAAc > 2:2020792/1‑93 (MQ=255)
cTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCg > 1:1005675/1‑93 (MQ=255)
cTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCg > 1:2340818/1‑93 (MQ=255)
tGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCgg > 1:3308150/1‑93 (MQ=255)
gCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGa < 1:2502729/93‑1 (MQ=255)
ccaccaATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGaa < 1:412236/93‑1 (MQ=255)
accaATGTACTGATTGAAGGCTGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAAc > 2:561636/1‑93 (MQ=255)
accaATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAAc > 2:286629/1‑93 (MQ=255)
accaATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAAc < 2:348415/93‑1 (MQ=255)
accaATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAAc > 1:4534265/1‑93 (MQ=255)
caATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAAcgc < 1:1537220/93‑1 (MQ=255)
caATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAAcgc < 2:532697/93‑1 (MQ=255)
caATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAAcgc > 1:2027150/1‑93 (MQ=255)
aaTGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAAcgcg > 2:3117345/1‑93 (MQ=255)
tGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCa > 1:1684607/1‑93 (MQ=255)
gTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAg < 2:794403/93‑1 (MQ=255)
gTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAg > 1:4384312/1‑93 (MQ=255)
tACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGc > 1:339843/1‑93 (MQ=255)
tACTGATTGAAGGCAGTATGGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGc < 1:1060865/93‑1 (MQ=255)
tGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGCCATTAACCGGAAACGCGCAGCGTa > 1:855957/1‑93 (MQ=255)
tGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTa > 1:3024891/1‑93 (MQ=255)
gATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTaa > 2:3066914/1‑93 (MQ=255)
aTTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAAc > 1:1412337/1‑93 (MQ=255)
aTTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAAc > 2:1461058/1‑93 (MQ=255)
ttGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACg > 2:3230280/1‑93 (MQ=255)
ttGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACg > 2:2404361/1‑93 (MQ=255)
ttGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGGGCCGACATCGCCCGCGGGACATTAACCGCTACCGCGCAGCGTAACg > 2:235632/1‑93 (MQ=255)
aaGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCg > 1:2323755/1‑93 (MQ=255)
aGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGa < 2:4653166/93‑1 (MQ=255)
ggCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGAc > 1:993003/1‑93 (MQ=255)
ggCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGAc > 2:384639/1‑93 (MQ=255)
gCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACg > 2:1086044/1‑93 (MQ=255)
cAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACgg < 1:3383264/93‑1 (MQ=255)
aGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGc > 1:237629/1‑93 (MQ=255)
aGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGc < 2:4189702/93‑1 (MQ=255)
gTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCa > 2:1354872/1‑93 (MQ=255)
gTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCa > 2:3553796/1‑93 (MQ=255)
tATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAg > 1:2550221/1‑93 (MQ=255)
tATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAg > 2:2068410/1‑93 (MQ=255)
tATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAg < 1:189859/93‑1 (MQ=255)
aTTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGc < 1:3782241/93‑1 (MQ=255)
ttGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCt < 2:4515136/93‑1 (MQ=255)
gATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTgg > 2:3186303/1‑93 (MQ=255)
aTAACGATCGCGTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTgga > 1:3653003/1‑92 (MQ=255)
aTAACGATCGCGTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGc > 1:765671/1‑93 (MQ=255)
aTAACGATCGCGTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGc > 2:448167/1‑93 (MQ=255)
tAACGATCGCGTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCa < 1:4321887/93‑1 (MQ=255)
tAACGATCGCGTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCa < 1:1128750/93‑1 (MQ=255)
aaCGATCGCGTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCaa < 2:2802039/93‑1 (MQ=255)
aaCGATCGCGTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCaa > 1:2640952/1‑93 (MQ=255)
aaCGATCGCGTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCaa > 2:1938631/1‑93 (MQ=255)
aCGATCTCGTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAg < 1:1255125/93‑1 (MQ=255)
aCGATCGCGTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGAAACGCCGACGGCACCTGGCAAg > 1:3282958/1‑93 (MQ=255)
gATCGCGTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTg > 2:1237959/1‑93 (MQ=255)
aTCGCGTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTgg > 2:4052792/1‑93 (MQ=255)
aTCGCGTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTgg > 1:4153388/1‑93 (MQ=255)
aTCGCGTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTgg < 2:176658/93‑1 (MQ=255)
cgcgTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGaa > 2:480420/1‑93 (MQ=255)
gcgTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGaaa > 2:2661612/1‑93 (MQ=255)
gcgTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGaaa > 1:1632908/1‑93 (MQ=255)
cgTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGaaaa < 2:58130/93‑1 (MQ=255)
gTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAAc < 1:2247189/93‑1 (MQ=255)
gTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAAc < 1:3097776/93‑1 (MQ=255)
gTTACGCTGACCAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAAc > 2:3638309/1‑93 (MQ=255)
ttACGCTGACCAACCTGGGTGCCGACACCGCCCGCCGGGCATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTCGCAAGTGGAAAAcc > 2:3775523/1‑93 (MQ=255)
tGACCAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCa < 2:700794/93‑1 (MQ=255)
tGACCAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCa > 1:3658269/1‑93 (MQ=255)
gACCAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTgcg > 1:3472776/1‑90 (MQ=255)
gACCAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCAt < 1:4607882/93‑1 (MQ=255)
|
GTTTAGTGCCGGATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCAT > NC_000913/3828584‑3828763
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CAGTTTAGTGCCGGATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCATGGCG > NC_000913/3828582‑3828767
|
CAGTTTAGTGCCGGATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCA > SRR4302535.313126/1‑94 (MQ=60)
AGTTTAGTGCCGGATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAA < SRR4302535.3080915/94‑1 (MQ=60)
AGTTTAGTGCCGGATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAA > SRR4302535.3017034/1‑94 (MQ=60)
AGTTTAGTGCCGGATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAA > SRR4302535.66977/1‑94 (MQ=60)
GTTTAGTGCCGGATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAAC > SRR4302535.2619652/1‑94 (MQ=60)
GTTTAGTGCCGGATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAAC < SRR4302535.2929651/94‑1 (MQ=60)
TTTAGTGCCGGATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACC > SRR4302535.2954501/1‑94 (MQ=60)
TTAGTGCCGGATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCT < SRR4302535.3060684/94‑1 (MQ=60)
TTAGTGCCGGATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCT < SRR4302535.1907975/94‑1 (MQ=60)
TAGTGCCGGATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTG < SRR4302535.3507602/94‑1 (MQ=60)
TAGTGCCGGATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTG < SRR4302535.417025/94‑1 (MQ=60)
AGTGCCGGATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGG > SRR4302535.3077830/1‑94 (MQ=60)
AGTGCCGGATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGG < SRR4302535.3355435/94‑1 (MQ=60)
AGTGCCGGATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGG > SRR4302535.4168577/1‑94 (MQ=60)
GTGCCGGATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGG < SRR4302535.231444/94‑1 (MQ=60)
GTGCCGGATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGG < SRR4302535.4627912/94‑1 (MQ=60)
CCGGATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGGTAACGATCGCGTTACGCTGACCAACCTGGGTGC < SRR4302535.758712/94‑1 (MQ=60)
CCGGATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGC > SRR4302535.1880805/1‑94 (MQ=60)
CCGGATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGGGC > SRR4302535.2671171/1‑94 (MQ=60)
CGGATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCC < SRR4302535.3623600/94‑1 (MQ=60)
GGATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCG < SRR4302535.872613/94‑1 (MQ=60)
GGATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCG > SRR4302535.519682/1‑94 (MQ=60)
GATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA > SRR4302535.2683653/1‑94 (MQ=60)
GATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA > SRR4302535.1790563/1‑94 (MQ=60)
GATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA > SRR4302535.1979113/1‑94 (MQ=60)
ATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑C > SRR4302535.428043/1‑94 (MQ=60)
TCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CA > SRR4302535.1118382/1‑94 (MQ=60)
CGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CAT < SRR4302535.831339/94‑1 (MQ=60)
GCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATC > SRR4302535.2665229/1‑94 (MQ=60)
GCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATC > SRR4302535.3011882/1‑94 (MQ=60)
TTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGC > SRR4302535.4643062/1‑94 (MQ=60)
TTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGC > SRR4302535.2891919/1‑94 (MQ=60)
TTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGC > SRR4302535.2892050/1‑94 (MQ=60)
TTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGC < SRR4302535.149445/94‑1 (MQ=60)
TTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGACGA‑CATCGCC > SRR4302535.4359048/1‑94 (MQ=60)
TCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCC > SRR4302535.2004567/1‑94 (MQ=60)
CGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCG > SRR4302535.1208097/1‑94 (MQ=60)
GCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGC > SRR4302535.3838457/1‑94 (MQ=60)
GCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGC > SRR4302535.4030797/1‑94 (MQ=60)
CTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCG > SRR4302535.2382846/1‑94 (MQ=60)
TCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGG > SRR4302535.2067553/1‑94 (MQ=60)
CAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGG > SRR4302535.3494903/1‑94 (MQ=60)
CAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGG < SRR4302535.1277566/94‑1 (MQ=60)
CAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGG > SRR4302535.4366683/1‑94 (MQ=60)
CAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGG > SRR4302535.3517951/1‑94 (MQ=60)
AATGATGTTCCTGCCACCAATGTACTGATTGAAGGCGGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGA > SRR4302535.2711774/1‑94 (MQ=60)
AATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGA > SRR4302535.4278892/1‑94 (MQ=60)
ATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGAC > SRR4302535.475782/1‑94 (MQ=60)
ATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGAC > SRR4302535.3032425/1‑94 (MQ=60)
ATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGAC < SRR4302535.806421/94‑1 (MQ=60)
TGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACA < SRR4302535.3929255/94‑1 (MQ=60)
TGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACA < SRR4302535.3899696/94‑1 (MQ=60)
TGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACA > SRR4302535.528206/1‑94 (MQ=60)
GATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACAT > SRR4302535.2566168/1‑94 (MQ=60)
ATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATT > SRR4302535.585782/1‑94 (MQ=60)
ATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATT > SRR4302535.2317384/1‑94 (MQ=60)
ATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATT > SRR4302535.1432529/1‑94 (MQ=60)
TGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTA > SRR4302535.3611413/1‑94 (MQ=60)
TGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTA > SRR4302535.160176/1‑94 (MQ=60)
TTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAAC < SRR4302535.1883491/94‑1 (MQ=60)
CCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCG < SRR4302535.3874976/94‑1 (MQ=60)
CCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCG > SRR4302535.1012822/1‑94 (MQ=60)
CCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCG > SRR4302535.2357563/1‑94 (MQ=60)
CCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCG > SRR4302535.2419044/1‑94 (MQ=60)
CTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGG > SRR4302535.3331173/1‑94 (MQ=60)
GCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAA > SRR4302535.2281585/1‑94 (MQ=60)
GCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAA < SRR4302535.2520775/94‑1 (MQ=60)
CCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAA < SRR4302535.415133/94‑1 (MQ=60)
CACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAAC > SRR4302535.4565294/1‑94 (MQ=60)
CACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAAC > SRR4302535.795405/1‑94 (MQ=60)
CACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAAC < SRR4302535.1644494/94‑1 (MQ=60)
ACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACG < SRR4302535.1063865/94‑1 (MQ=60)
ACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACG > SRR4302535.3119185/1‑94 (MQ=60)
CCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGC > SRR4302535.2041758/1‑94 (MQ=60)
CAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTTCCGA‑CATCGCCCGCGGGACATTAACCTGAAACGCG > SRR4302535.4350750/1‑94 (MQ=60)
CAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCG > SRR4302535.3415575/1‑94 (MQ=60)
CAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCG < SRR4302535.1548297/94‑1 (MQ=60)
CAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCG > SRR4302535.463877/1‑94 (MQ=60)
ATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCA > SRR4302535.1696806/1‑94 (MQ=60)
TGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAG > SRR4302535.575017/1‑94 (MQ=60)
TGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAG > SRR4302535.4414309/1‑94 (MQ=60)
GTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGC < SRR4302535.2995320/94‑1 (MQ=60)
GTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGC > SRR4302535.342196/1‑94 (MQ=60)
TACTGATTGAAGGCAGTATGGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCG < SRR4302535.1068417/94‑1 (MQ=60)
CTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGCCATTAACCGGAAACGCGCAGCGTA > SRR4302535.861991/1‑94 (MQ=60)
CTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTA > SRR4302535.3682099/1‑94 (MQ=60)
CTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTA > SRR4302535.3046068/1‑94 (MQ=60)
TGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGG‑GCCGACCATGGCCCGCGGGAC‑TTAACCGGGAACGCcgaggggaac > SRR4302535.1127189/1‑84 (MQ=53)
GATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAAC > SRR4302535.1422420/1‑94 (MQ=60)
ATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACG < SRR4302535.895829/94‑1 (MQ=60)
ATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACG > SRR4302535.858026/1‑94 (MQ=60)
TGAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCC > SRR4302535.333799/1‑94 (MQ=60)
GAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCG > SRR4302535.4423357/1‑94 (MQ=60)
GAAGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCG > SRR4302535.2340382/1‑94 (MQ=60)
AGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGAC > SRR4302535.3756300/1‑94 (MQ=60)
AGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGAC > SRR4302535.2544870/1‑94 (MQ=60)
AGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGAC > SRR4302535.1687983/1‑94 (MQ=60)
AGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGAC > SRR4302535.1000055/1‑94 (MQ=60)
AGGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGAC < SRR4302535.1998919/94‑1 (MQ=60)
GGCAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACG < SRR4302535.3241331/94‑1 (MQ=60)
CAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGC > SRR4302535.239264/1‑94 (MQ=60)
CAGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGC < SRR4302535.3406784/94‑1 (MQ=60)
AGTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCA > SRR4302535.238289/1‑94 (MQ=60)
GTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAG > SRR4302535.2586834/1‑94 (MQ=60)
GTATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAG > SRR4302535.2568579/1‑94 (MQ=60)
TATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGC < SRR4302535.191169/94‑1 (MQ=60)
TATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGC > SRR4302535.3309651/1‑94 (MQ=60)
ATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCT > SRR4302535.3679795/1‑94 (MQ=60)
ATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCT < SRR4302535.3808337/94‑1 (MQ=60)
ATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCT < SRR4302535.666204/94‑1 (MQ=60)
ATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCT < SRR4302535.469403/94‑1 (MQ=60)
ATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCT > SRR4302535.1579249/1‑94 (MQ=60)
ATTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCG > SRR4302535.4430031/1‑94 (MQ=60)
TTGATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTG < SRR4302535.1307254/94‑1 (MQ=60)
TGACAACGAGCGCGTTACGCTCACCAACCTGGGTCCCGA‑CATCGCCCGCGGGACATTACCCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGC < SRR4302535.1691070/94‑1 (MQ=60)
GATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGC > SRR4302535.2324685/1‑94 (MQ=60)
GATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGC > SRR4302535.771062/1‑94 (MQ=60)
GATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGC < SRR4302535.666866/94‑1 (MQ=60)
GATAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGA > SRR4302535.3678297/1‑94 (MQ=60)
TAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAA > SRR4302535.2659871/1‑94 (MQ=60)
TAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAA < SRR4302535.3637204/94‑1 (MQ=60)
TAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAA < SRR4302535.4351454/94‑1 (MQ=60)
TAACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAA < SRR4302535.1136811/94‑1 (MQ=60)
AACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAG > SRR4302535.2482847/1‑94 (MQ=60)
AACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAG > SRR4302535.346866/1‑94 (MQ=60)
AACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAG > SRR4302535.3118998/1‑94 (MQ=60)
AACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAG > SRR4302535.322601/1‑94 (MQ=60)
AACGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGAAACGCCGACGGCACCTGGCAAG > SRR4302535.3305761/1‑94 (MQ=60)
ACGATCTCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGT < SRR4302535.1264100/94‑1 (MQ=60)
CGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTG < SRR4302535.1113256/94‑1 (MQ=60)
CGATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTG > SRR4302535.756225/1‑94 (MQ=60)
GATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGG < SRR4302535.2189428/94‑1 (MQ=60)
GATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGG > SRR4302535.529994/1‑94 (MQ=60)
GATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGG > SRR4302535.120342/1‑94 (MQ=60)
GATCGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGG > SRR4302535.4181827/1‑94 (MQ=60)
CGCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAA > SRR4302535.1644707/1‑94 (MQ=60)
GCGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAA < SRR4302535.1603283/94‑1 (MQ=60)
CGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCTTAACGCCGACGGCAGCTGGCAAGTGGAAAAC < SRR4302535.4200914/94‑1 (MQ=60)
CGTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAAC < SRR4302535.1856148/94‑1 (MQ=60)
GTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACC < SRR4302535.2263184/94‑1 (MQ=60)
GTTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACC < SRR4302535.3119345/94‑1 (MQ=60)
TTACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGATACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCT < SRR4302535.3324816/94‑1 (MQ=60)
TACGCTGACCACCCTGGGTGACGT‑CATCGGCCGCAGAACATTAACCGGAAACGCGCAGCGTAACCCCGACGGCAGCTGGCAAGTGGAAAACCTG < SRR4302535.1307324/94‑1 (MQ=60)
TACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTG < SRR4302535.2349305/94‑1 (MQ=60)
ACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGC > SRR4302535.1974974/1‑94 (MQ=60)
ACGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGC > SRR4302535.2319737/1‑94 (MQ=60)
CGCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAGACGCGCAGCGTACCGCCGACGGCAGCTGGCAAGTGGAAAACCTGCG < SRR4302535.2123078/94‑1 (MQ=60)
GCTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGC > SRR4302535.3008707/1‑94 (MQ=60)
CTGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCA > SRR4302535.3683593/1‑94 (MQ=60)
TGACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCAC > SRR4302535.3496908/1‑94 (MQ=60)
GACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCATG < SRR4302535.4639194/94‑1 (MQ=60)
GACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCATG > SRR4302535.4651643/1‑94 (MQ=60)
GACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCATG > SRR4302535.1595694/1‑94 (MQ=60)
ACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGTAGCTGGCAAGTGGAAAACCTGCGCATGG > SRR4302535.3985045/1‑94 (MQ=60)
ACCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCATGG > SRR4302535.4130381/1‑94 (MQ=60)
CCAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCATGGC < SRR4302535.3869067/94‑1 (MQ=60)
CAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCATGGCG > SRR4302535.2918704/1‑94 (MQ=60)
CAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCATGGCG < SRR4302535.3975243/94‑1 (MQ=60)
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CAGTTTAGTGCCGGATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGA‑CATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCATGGCG > NC_000913/3828582‑3828767
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
