Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1873 183.1 9376148 98.2% 9207377 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,095,111 G→A intergenic (‑82/‑206) rhaB ← / → rhaS rhamnulokinase/RhaS

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,095,1110GA100.0% 853.5 / NA 234intergenic (‑82/‑206)rhaB/rhaSrhamnulokinase/RhaS
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (131/103);  total (131/103)

Only 100 of 241 total aligned reads displayed.

AAGGTCATAATGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGGGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATGCTCACCGCATTTCCTGAAAAT  >  NC_000913/4095022‑4095200
                                                                                         |                                                                                         
gtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGcc                                                                                        >  2:84767‑M2/12‑93 (MQ=255)
 tcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCa                                                                                       >  2:4627495‑M2/11‑93 (MQ=255)
 tcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCa                                                                                       >  1:223008‑M2/11‑93 (MQ=255)
   gacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGCCCTTCTCGTTACTGACAGGAAAATGAGCCAtt                                                                                     <  1:2299961‑M2/85‑1 (MQ=255)
    acatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTg                                                                                    >  2:3866515‑M2/8‑93 (MQ=255)
    acatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTg                                                                                    <  2:3593908‑M2/86‑1 (MQ=255)
    acatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTg                                                                                    <  2:1867351‑M2/86‑1 (MQ=255)
     catatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTgg                                                                                   >  1:4634989‑M2/7‑93 (MQ=255)
     catatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTgg                                                                                   >  1:3581435‑M2/7‑93 (MQ=255)
      atatgGAGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGTGCCTGAATTCGCGACCTTCTCGTTACTGGCAGGAAAATGAGCCATTGGc                                                                                  >  2:734235‑M2/6‑93 (MQ=255)
       tatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCa                                                                                 >  1:74174‑M2/5‑93 (MQ=255)
           gtgATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCa                                                                             <  1:1149032/93‑1 (MQ=255)
           gtgATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCa                                                                             >  2:1616416/1‑93 (MQ=255)
           gtgATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCa                                                                             <  1:2814684/93‑1 (MQ=255)
            tgATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAg                                                                            <  1:1997658/93‑1 (MQ=255)
               tCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGa                                                                         >  2:4685238/1‑93 (MQ=255)
                ccTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGaa                                                                        <  2:524948/93‑1 (MQ=255)
                 ctgctgAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGaaa                                                                       <  1:377278/93‑1 (MQ=255)
                  tgctgAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAg                                                                      >  1:1047662/1‑93 (MQ=255)
                  tgctgAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAg                                                                      <  2:2117633/93‑1 (MQ=255)
                  tgctgAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAg                                                                      >  2:2998020/1‑93 (MQ=255)
                  tgctgAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAg                                                                      <  2:4294320/93‑1 (MQ=255)
                   tctgAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCCACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGa                                                                     <  1:2687889/92‑1 (MQ=255)
                   gctgAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGa                                                                     >  1:650463/1‑93 (MQ=255)
                   gctgAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGa                                                                     >  1:2895798/1‑93 (MQ=255)
                    ctgAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGAt                                                                    >  2:1406148/1‑93 (MQ=255)
                      gAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGa                                                                  <  1:711867/93‑1 (MQ=255)
                      gAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGa                                                                  >  1:2522058/1‑93 (MQ=255)
                       aaTTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGaa                                                                 <  1:3091852/93‑1 (MQ=255)
                       aaTTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGaa                                                                 >  1:453134/1‑93 (MQ=255)
                       aaTTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGaa                                                                 >  2:3317352/1‑93 (MQ=255)
                       aaTTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGaa                                                                 >  1:3675736/1‑93 (MQ=255)
                       aaTTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTAATGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGaa                                                                 <  2:2869701/93‑1 (MQ=255)
                        aTTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAAc                                                                <  2:4043594/93‑1 (MQ=255)
                        aTTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAAc                                                                <  1:2568469/93‑1 (MQ=255)
                         tttCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACg                                                               <  2:1438830/93‑1 (MQ=255)
                          ttCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGt                                                              <  2:4557410/93‑1 (MQ=255)
                               tACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCAATTGGCAACCAGGGAAAGATGAAAGtgatga                                                         >  1:2905111/1‑93 (MQ=255)
                                  caCCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGt                                                      <  1:1400960/92‑1 (MQ=255)
                                     cAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTca                                                   <  1:2043624/93‑1 (MQ=255)
                                      aGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTcac                                                  <  2:2197754/93‑1 (MQ=255)
                                      aGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTcac                                                  >  1:774709/1‑93 (MQ=255)
                                       gTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTcaca                                                 >  2:1384251/1‑93 (MQ=255)
                                        tCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACaa                                                <  1:479293/93‑1 (MQ=255)
                                         cTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAAt                                               <  1:3897364/93‑1 (MQ=255)
                                         cTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAAt                                               >  1:3151080/1‑93 (MQ=255)
                                          tAAAATGCGCCTGATTTCGCAACCTCCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAAtt                                              <  2:27579/93‑1 (MQ=255)
                                          tAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAAtt                                              <  2:2909649/93‑1 (MQ=255)
                                          tAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAAtt                                              >  2:3849299/1‑93 (MQ=255)
                                           aaaaaGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAAttt                                             >  1:1624618/1‑93 (MQ=255)
                                              aaGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCt                                          >  1:3123673/1‑93 (MQ=255)
                                                 cgcCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCTACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGaa                                       <  1:3296228/93‑1 (MQ=255)
                                                 cgcCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGaa                                       <  2:3821260/93‑1 (MQ=255)
                                                  gcCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAAt                                      >  1:2193972/1‑93 (MQ=255)
                                                  gcCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAAt                                      <  2:1169280/93‑1 (MQ=255)
                                                  gcCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAAt                                      <  1:4463016/93‑1 (MQ=255)
                                                   ccTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAAtt                                     >  1:332689/1‑93 (MQ=255)
                                                   ccTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAAtt                                     >  1:4340048/1‑93 (MQ=255)
                                                   ccTAAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAAtt                                     <  1:1414203/93‑1 (MQ=255)
                                                    cTGAACTCTCGCCCTTCTCGTTACTGACAGGAAAATGAGCCATGGGCAACCAGGGAAAGATGAACGTGATGATGGTCACAATTTGCTGAATtg                                    <  2:3216301/93‑1 (MQ=255)
                                                     tGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATtgt                                   >  1:1566598/1‑93 (MQ=255)
                                                     tGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATtgt                                   <  2:2485219/93‑1 (MQ=255)
                                                      gAATTCGTGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATtgtg                                  <  1:3986294/93‑1 (MQ=255)
                                                      gAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATtgtg                                  >  1:121061/1‑93 (MQ=255)
                                                        aTTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTgtggt                                >  2:1203945/1‑93 (MQ=255)
                                                        aTTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTgtggt                                >  2:4444923/1‑93 (MQ=255)
                                                         ttCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTgtggtg                               >  1:2969249/1‑93 (MQ=255)
                                                         ttCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTgtggtg                               >  1:3267724/1‑93 (MQ=255)
                                                         ttCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTgtggtg                               <  1:2377674/93‑1 (MQ=255)
                                                          tCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGgtga                              >  2:1665784/1‑93 (MQ=255)
                                                            gcgACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGgtgatg                            <  1:4068952/93‑1 (MQ=255)
                                                            gcgACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGgtgatg                            >  1:331546/1‑93 (MQ=255)
                                                             cgACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGgtgatgt                           <  2:3542356/93‑1 (MQ=255)
                                                              gACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGgtgatgtg                          <  1:166150/93‑1 (MQ=255)
                                                               aCCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGgtgatgtga                         >  2:825533/1‑93 (MQ=255)
                                                               aCCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGgtgatgtga                         >  2:1832012/1‑93 (MQ=255)
                                                                ccTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTATGgtgatgtgat                        >  1:1870361/1‑93 (MQ=255)
                                                                 cTTCTCGCTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGtgatgtgatg                       >  1:515537/1‑93 (MQ=255)
                                                                  ttCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATGc                      >  2:3296587/1‑93 (MQ=255)
                                                                   tctcGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATGCt                     <  1:2151133/93‑1 (MQ=255)
                                                                   tctcGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATGCt                     >  1:3546342/1‑93 (MQ=255)
                                                                     tcGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATGCTCa                   <  2:3070272/93‑1 (MQ=255)
                                                                       gTTGCTGACAGGAAAATGAGCCATTGCCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATGCTCAcc                 <  2:3700777/93‑1 (MQ=255)
                                                                       gTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATGCTCAcc                 >  1:4135677/1‑93 (MQ=255)
                                                                       gTTACTGACAGGAAAATGAGCCAGTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATGCTCAcc                 <  1:1829892/93‑1 (MQ=255)
                                                                        ttACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATGCTCACCg                >  1:4191386/1‑93 (MQ=255)
                                                                         tACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATGCTCACCGc               >  1:293651/1‑93 (MQ=255)
                                                                          aCTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATGCTCACCGCa              >  1:3870711/1‑93 (MQ=255)
                                                                            tGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATGCTCACCGCAtt            <  1:3370997/93‑1 (MQ=255)
                                                                            tGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATGCTCACCGCAtt            <  1:2091705/93‑1 (MQ=255)
                                                                             gACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATGCTCACCGCAttt           >  1:3030646/1‑93 (MQ=255)
                                                                               cAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATGCTCACCGCATTTcc         >  2:707341/1‑93 (MQ=255)
                                                                               cAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATGCTCACCGCATTTcc         >  1:3761578/1‑93 (MQ=255)
                                                                                 ggAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATGCTCACCGCATTTCCTg       >  2:324448/1‑93 (MQ=255)
                                                                                 ggAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATGCTCACCGCATTTCCTg       >  2:4426951/1‑93 (MQ=255)
                                                                                 ggAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATGCTCACCGCATTTCCTg       >  2:4316423/1‑93 (MQ=255)
                                                                                 ggAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATGCTCACCGCATTTCCTg       >  1:615346/1‑93 (MQ=255)
                                                                                    aaaTGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATGCTCACCGCATTTCCTGaaa    >  2:344144/1‑93 (MQ=255)
                                                                                      aTGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATGCTCACCGCATTTCCTGAAAAt  <  2:2631841/93‑1 (MQ=255)
                                                                                      aTGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATGCTCACCGCATTTCCTGAAAAt  <  2:2062794/93‑1 (MQ=255)
                                                                                         |                                                                                         
AAGGTCATAATGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGGGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATGCTCACCGCATTTCCTGAAAAT  >  NC_000913/4095022‑4095200

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GCGAAAGGTCATAATGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGGGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATGCTCACCGCATTTCCTGAAAATTCAC  >  NC_000913/4095018‑4095204
                                                                                             |                                                                                             
tagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGA                                                                                               <  SRR4302535.1064436/79‑1 (MQ=60)
tagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGA                                                                                               <  SRR4302535.215610/79‑1 (MQ=60)
 agagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAG                                                                                              >  SRR4302535.3235993/15‑94 (MQ=60)
    gtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCA                                                                                           >  SRR4302535.3975949/12‑94 (MQ=60)
    gtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCA                                                                                           >  SRR4302535.224543/12‑94 (MQ=60)
     gcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCAT                                                                                          <  SRR4302535.3591590/84‑1 (MQ=60)
       gacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGCCCTTCTCGTTACTGACAGGAAAATGAGCCATTG                                                                                        <  SRR4302535.2316419/86‑1 (MQ=60)
       gacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTG                                                                                        >  SRR4302535.3142698/9‑94 (MQ=60)
        acatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGG                                                                                       >  SRR4302535.4666427/8‑94 (MQ=60)
        acatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGG                                                                                       >  SRR4302535.3606276/8‑94 (MQ=60)
        acatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGG                                                                                       >  SRR4302535.499748/8‑94 (MQ=60)
         CATATGGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGC                                                                                      >  SRR4302535.224324/1‑94 (MQ=60)
          atatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCA                                                                                     >  SRR4302535.74713/6‑94 (MQ=60)
            atgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATAAGCCATTGGCAAC                                                                                   >  SRR4302535.3806952/4‑94 (MQ=60)
              GGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCA                                                                                 <  SRR4302535.2919989/94‑1 (MQ=60)
              GGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCA                                                                                 >  SRR4302535.1644232/1‑94 (MQ=60)
               GTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAG                                                                                >  SRR4302535.2866158/1‑94 (MQ=60)
               GTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAG                                                                                <  SRR4302535.2834684/94‑1 (MQ=60)
               GTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAG                                                                                <  SRR4302535.1157215/94‑1 (MQ=60)
                TGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGG                                                                               <  SRR4302535.2012043/94‑1 (MQ=60)
                TGATCCTGCTGAATTTCATTACGACCAGTCGAAAAAGCGCCTGAATTCGCGACCTTCTCGTTTCTGACAGTAAAATGAGCCATTGGCAACCAGG                                                                               <  SRR4302535.1246564/94‑1 (MQ=60)
                 GATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGG                                                                              <  SRR4302535.1708244/94‑1 (MQ=60)
                 GATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGG                                                                              >  SRR4302535.2563311/1‑94 (MQ=60)
                     CTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAG                                                                          <  SRR4302535.379897/94‑1 (MQ=60)
                     CTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAG                                                                          >  SRR4302535.1055091/1‑94 (MQ=60)
                     CTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAG                                                                          >  SRR4302535.317228/1‑94 (MQ=60)
                      TGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGA                                                                         >  SRR4302535.655001/1‑94 (MQ=60)
                      TGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGA                                                                         >  SRR4302535.2916278/1‑94 (MQ=60)
                       TCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCCACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGAT                                                                        <  SRR4302535.2707100/94‑1 (MQ=60)
                        CTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATG                                                                       <  SRR4302535.2158836/94‑1 (MQ=60)
                        CTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATG                                                                       <  SRR4302535.3103348/94‑1 (MQ=60)
                        CTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATG                                                                       >  SRR4302535.1982678/1‑94 (MQ=60)
                         TGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGA                                                                      >  SRR4302535.2540233/1‑94 (MQ=60)
                          GAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAA                                                                     <  SRR4302535.716863/94‑1 (MQ=60)
                          GAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAA                                                                     >  SRR4302535.456309/1‑94 (MQ=60)
                          GAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAA                                                                     >  SRR4302535.3701186/1‑94 (MQ=60)
                           AATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAAC                                                                    <  SRR4302535.323573/94‑1 (MQ=60)
                           AATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAAC                                                                    <  SRR4302535.3113382/94‑1 (MQ=60)
                           AATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAAC                                                                    >  SRR4302535.3181670/1‑94 (MQ=60)
                           AATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAAC                                                                    >  SRR4302535.2229240/1‑94 (MQ=60)
                           AATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAAC                                                                    >  SRR4302535.68582/1‑94 (MQ=60)
                           AATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAAC                                                                    <  SRR4302535.774309/94‑1 (MQ=60)
                            ATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACG                                                                   <  SRR4302535.2586945/94‑1 (MQ=60)
                             TTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGT                                                                  <  SRR4302535.2046724/94‑1 (MQ=60)
                             TTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGT                                                                  <  SRR4302535.1318/94‑1 (MQ=60)
                              TTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTG                                                                 >  SRR4302535.438927/1‑94 (MQ=60)
                               TCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGA                                                                <  SRR4302535.1468302/94‑1 (MQ=60)
                                CATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGAT                                                               >  SRR4302535.633900/1‑94 (MQ=60)
                                CATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGAT                                                               >  SRR4302535.1740797/1‑94 (MQ=60)
                                  TTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGA                                                             <  SRR4302535.4591391/94‑1 (MQ=60)
                                  TTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCAATTGGCAACCAGGGAAAGATGAAAGTGATGA                                                             >  SRR4302535.2925648/1‑94 (MQ=60)
                                      GACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTT                                                         >  SRR4302535.2664756/1‑94 (MQ=60)
                                      CACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTT                                                         <  SRR4302535.1410957/94‑1 (MQ=60)
                                       ACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTC                                                        <  SRR4302535.2965026/94‑1 (MQ=60)
                                       ACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTC                                                        >  SRR4302535.1844208/1‑94 (MQ=60)
                                       ACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTC                                                        >  SRR4302535.3900608/1‑94 (MQ=60)
                                       ACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTC                                                        <  SRR4302535.1414784/94‑1 (MQ=60)
                                        CCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCC                                                       >  SRR4302535.3766162/1‑94 (MQ=60)
                                        CCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCA                                                       >  SRR4302535.3376768/1‑94 (MQ=60)
                                         CAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCAC                                                      >  SRR4302535.780157/1‑94 (MQ=60)
                                         CAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCAC                                                      <  SRR4302535.2058345/94‑1 (MQ=60)
                                            TCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAAT                                                   <  SRR4302535.730746/94‑1 (MQ=60)
                                            TCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAAT                                                   >  SRR4302535.3172979/1‑94 (MQ=60)
                                            TCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAAT                                                   <  SRR4302535.482656/94‑1 (MQ=60)
                                             CTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATT                                                  <  SRR4302535.3924070/94‑1 (MQ=60)
                                             CTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGACATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATT                                                  <  SRR4302535.3320790/94‑1 (MQ=60)
                                              TAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTT                                                 >  SRR4302535.1636348/1‑94 (MQ=60)
                                               AAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTG                                                <  SRR4302535.3523185/94‑1 (MQ=60)
                                               AAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTG                                                <  SRR4302535.3068389/94‑1 (MQ=60)
                                                AAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGC                                               >  SRR4302535.695305/1‑94 (MQ=60)
                                                AAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGC                                               >  SRR4302535.3514009/1‑94 (MQ=60)
                                                 AAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCT                                              >  SRR4302535.3145428/1‑94 (MQ=60)
                                                 AAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCT                                              >  SRR4302535.2083854/1‑94 (MQ=60)
                                                 AAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCT                                              >  SRR4302535.2151907/1‑94 (MQ=60)
                                                  AAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTG                                             <  SRR4302535.2202915/94‑1 (MQ=60)
                                                     CGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCTACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAAT                                          <  SRR4302535.3319145/94‑1 (MQ=60)
                                                     CGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAAT                                          >  SRR4302535.544061/1‑94 (MQ=60)
                                                     CGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAAT                                          <  SRR4302535.2437732/94‑1 (MQ=60)
                                                     CGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAAT                                          >  SRR4302535.2209606/1‑94 (MQ=60)
                                                      GCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATT                                         <  SRR4302535.4493626/94‑1 (MQ=60)
                                                      GCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATT                                         >  SRR4302535.334990/1‑94 (MQ=60)
                                                      GCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATT                                         >  SRR4302535.4369732/1‑94 (MQ=60)
                                                       CCTAAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTG                                        <  SRR4302535.1424299/94‑1 (MQ=60)
                                                        CTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGT                                       >  SRR4302535.1159010/1‑94 (MQ=60)
                                                        CTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGT                                       >  SRR4302535.1577904/1‑94 (MQ=60)
                                                         TGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTG                                      <  SRR4302535.4381257/94‑1 (MQ=60)
                                                         TGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTG                                      >  SRR4302535.121910/1‑94 (MQ=60)
                                                          GAATTCGTGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGG                                     <  SRR4302535.4013537/94‑1 (MQ=60)
                                                           AATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGT                                    >  SRR4302535.3619411/1‑94 (MQ=60)
                                                            ATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTG                                   >  SRR4302535.3290425/1‑94 (MQ=60)
                                                            ATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTG                                   >  SRR4302535.4194615/1‑94 (MQ=60)
                                                            ATTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTG                                   >  SRR4302535.2990085/1‑94 (MQ=60)
                                                            ATTAGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTG                                   >  SRR4302535.1610292/1‑94 (MQ=60)
                                                             TTCGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGA                                  <  SRR4302535.2394752/94‑1 (MQ=60)
                                                               CGCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATG                                >  SRR4302535.333843/1‑94 (MQ=60)
                                                                GCGACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGT                               <  SRR4302535.4096799/94‑1 (MQ=60)
                                                                  GACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGA                             <  SRR4302535.167306/94‑1 (MQ=60)
                                                                  GACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGA                             <  SRR4302535.3844936/94‑1 (MQ=60)
                                                                   ACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGAT                            >  SRR4302535.3294478/1‑94 (MQ=60)
                                                                   ACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGAT                            >  SRR4302535.4115431/1‑94 (MQ=60)
                                                                   ACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGAT                            <  SRR4302535.2931602/94‑1 (MQ=60)
                                                                   ACCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTATGGTGATGTGAT                            >  SRR4302535.1883844/1‑94 (MQ=60)
                                                                    CCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATG                           <  SRR4302535.3998357/94‑1 (MQ=60)
                                                                    CCTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATG                           >  SRR4302535.3323770/1‑94 (MQ=60)
                                                                    CCTTCTCGCTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATG                           >  SRR4302535.519138/1‑94 (MQ=60)
                                                                     CTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATGC                          >  SRR4302535.4700287/1‑94 (MQ=60)
                                                                     CTTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATGC                          >  SRR4302535.4102965/1‑94 (MQ=60)
                                                                      TTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATGCT                         >  SRR4302535.3570964/1‑94 (MQ=60)
                                                                      TTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATGCT                         >  SRR4302535.110334/1‑94 (MQ=60)
                                                                      TTCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATGCT                         >  SRR4302535.3342260/1‑94 (MQ=60)
                                                                       TCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATGCTC                        <  SRR4302535.2166598/94‑1 (MQ=60)
                                                                       TCTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATGCTC                        <  SRR4302535.226918/94‑1 (MQ=60)
                                                                        CTCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATGCTCA                       >  SRR4302535.4537637/1‑94 (MQ=60)
                                                                        CGCGTTACTGACAGGAAAATGAGCCAGTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATGCTCA                       <  SRR4302535.1947302/94‑1 (MQ=60)
                                                                         TCGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATGCTCAC                      <  SRR4302535.4598391/94‑1 (MQ=60)
                                                                          CGTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATGCTCACC                     >  SRR4302535.4163993/1‑94 (MQ=60)
                                                                           GTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGTTGCTCACCG                    >  SRR4302535.1475451/1‑94 (MQ=60)
                                                                           GTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATGCTCACCG                    >  SRR4302535.2490580/1‑94 (MQ=60)
                                                                           GTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATGCTCACCG                    >  SRR4302535.3789198/1‑94 (MQ=60)
                                                                           GTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATGCTCACCG                    >  SRR4302535.4220070/1‑94 (MQ=60)
                                                                           GTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATGCTCACCG                    >  SRR4302535.2912295/1‑94 (MQ=60)
                                                                           GTTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATGCTCACCG                    >  SRR4302535.2381363/1‑94 (MQ=60)
                                                                           GTTACTGACAGGAAAATGAGCCAGTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATGCTCACCG                    <  SRR4302535.1843103/94‑1 (MQ=60)
                                                                            TTACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATGCTCACCGC                   >  SRR4302535.295703/1‑94 (MQ=60)
                                                                             TACTGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATGCTCACCGCA                  >  SRR4302535.3897311/1‑94 (MQ=60)
                                                                                TGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATGCTCACCGCATTT               >  SRR4302535.3051864/1‑94 (MQ=60)
                                                                                TGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATGCTCACCGCATTT               >  SRR4302535.843149/1‑94 (MQ=60)
                                                                                TGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATGCTCACCGCATTT               <  SRR4302535.2106778/94‑1 (MQ=60)
                                                                                TGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATGCTCACCGCATTT               <  SRR4302535.3394449/94‑1 (MQ=60)
                                                                                TGACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATGCTCACCGCATTT               <  SRR4302535.367124/94‑1 (MQ=60)
                                                                                  ACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATGCTCACCGCATTTCC             <  SRR4302535.560606/94‑1 (MQ=60)
                                                                                  ACAGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATGCTCACCGCATTTCC             >  SRR4302535.3787572/1‑94 (MQ=60)
                                                                                    AGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATGCTCACCGCATTTCCTG           >  SRR4302535.619626/1‑94 (MQ=60)
                                                                                    AGGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATGCTCACCGCATTTCCTG           >  SRR4302535.4020798/1‑94 (MQ=60)
                                                                                     GGAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATGCTCACCGCATTTCCTGA          <  SRR4302535.3027341/94‑1 (MQ=60)
                                                                                      GAAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATGCTCACCGCATTTCCTGAA         <  SRR4302535.948876/94‑1 (MQ=60)
                                                                                       AAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATGTTCACCGCATTTCCTGAAA        >  SRR4302535.2711460/1‑94 (MQ=60)
                                                                                       AAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATGCTCACCGCATTTCCTGAAA        >  SRR4302535.4279350/1‑94 (MQ=60)
                                                                                       AAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATGCTCACCGCATTTCCTGAAA        >  SRR4302535.2647881/1‑94 (MQ=60)
                                                                                       AAAATGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATGCTCACCGCATTTCCTGAAA        >  SRR4302535.2969947/1‑94 (MQ=60)
                                                                                           TGAGCCATTGGCGACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATGCTCACCGCATTTCCTGAAAATTC    <  SRR4302535.1714526/94‑1 (MQ=60)
                                                                                           TGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATGCTCACCGCATTTCCTGAAAATTC    <  SRR4302535.2125271/94‑1 (MQ=60)
                                                                                           TGAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATGCTCACCGCATTTCCTGAAAATTC    <  SRR4302535.1384102/94‑1 (MQ=60)
                                                                                            GAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATGCTCACCGCATTTCCTGAAAATTCA   <  SRR4302535.1651979/94‑1 (MQ=60)
                                                                                            GAGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATGCTCACCGCATTTCCTGAAAATTCA   <  SRR4302535.3968709/94‑1 (MQ=60)
                                                                                             AGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATGCTCACCGCATTTCCTGAAAATTCAC  >  SRR4302535.4342167/1‑94 (MQ=60)
                                                                                             AGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATGCTCACCGCATTTCCTGAAAATTCAC  >  SRR4302535.2332469/1‑94 (MQ=60)
                                                                                             AGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATGCTCACCGCATTTCCTGAAAATTCAC  <  SRR4302535.3586071/94‑1 (MQ=60)
                                                                                             |                                                                                             
GCGAAAGGTCATAATGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGGGCCATTGGCAACCAGGGAAAGATGAACGTGATGATGTTCACAATTTGCTGAATTGTGGTGATGTGATGCTCACCGCATTTCCTGAAAATTCAC  >  NC_000913/4095018‑4095204

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑