Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,097,623	T→C	M162V (ATG→GTG)	rhaT ←	RhaT

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,097,623	0	T	C	100.0%	667.7 / NA	211	M162V (ATG→GTG)	rhaT	RhaT
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (123/88); total (123/88)

Only 100 of 216 total aligned reads displayed.

TCGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCATCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCCGCCTT  >  NC_000913/4097533‑4097712

tCGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCt                                                                                         <  2:1755743/93‑1 (MQ=255)

 cGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCtt                                                                                        <  1:2765438/93‑1 (MQ=255)

  gCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTg                                                                                       >  1:4054931/1‑93 (MQ=255)

  gCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTg                                                                                       >  1:3651631/1‑93 (MQ=255)

  gCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTg                                                                                       <  1:900781/93‑1 (MQ=255)

   cAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTgc                                                                                      <  2:4174722/93‑1 (MQ=255)

    aaaGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTgcg                                                                                     >  2:4017732/1‑93 (MQ=255)

      aGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGct                                                                                   <  1:3018987/93‑1 (MQ=255)

       ggACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGctc                                                                                  >  1:3759052/1‑93 (MQ=255)

         aCATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCtt                                                                                >  2:293619/1‑93 (MQ=255)

         aCATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCtt                                                                                >  2:600981/1‑93 (MQ=255)

          cATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCttt                                                                               <  2:2451569/93‑1 (MQ=255)

          cATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCttt                                                                               <  1:2268085/93‑1 (MQ=255)

           aTCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTc                                                                              <  2:4419794/93‑1 (MQ=255)

           aTCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTc                                                                              >  1:4411956/1‑93 (MQ=255)

            tCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCa                                                                             >  1:81076/1‑93 (MQ=255)

            tCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCa                                                                             >  2:1704990/1‑93 (MQ=255)

             cccGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCaa                                                                            <  1:427548/93‑1 (MQ=255)

             cccGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCaa                                                                            <  2:696783/93‑1 (MQ=255)

              ccGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAAc                                                                           <  1:2878252/93‑1 (MQ=255)

               cGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACt                                                                          <  2:3027519/93‑1 (MQ=255)

                  cAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGcc                                                                       <  2:1760968/93‑1 (MQ=255)

                   agagAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGccc                                                                      >  1:3701010/1‑93 (MQ=255)

                   agagAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGccc                                                                      <  2:4658206/93‑1 (MQ=255)

                    gagaAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCg                                                                     >  2:1814235/1‑93 (MQ=255)

                    gagaAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCg                                                                     >  1:672546/1‑93 (MQ=255)

                    gagaAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCg                                                                     >  2:1305968/1‑93 (MQ=255)

                      gaAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGgc                                                                   >  1:2326670/1‑93 (MQ=255)

                       aaaaTGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGgcg                                                                  >  2:1480390/1‑93 (MQ=255)

                         aaTGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGcgcg                                                                >  1:2715917/1‑93 (MQ=255)

                         aaTGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGcgcg                                                                >  1:622277/1‑93 (MQ=255)

                           tGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAg                                                              <  1:20386/93‑1 (MQ=255)

                            gCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGt                                                             <  1:3797698/93‑1 (MQ=255)

                            cccGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGt                                                             <  2:815033/92‑1 (MQ=255)

                              cGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTa                                                           <  1:3254736/93‑1 (MQ=255)

                               gCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTAc                                                          >  2:2615832/1‑93 (MQ=255)

                               gCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTAc                                                          >  1:1109485/1‑93 (MQ=255)

                               gCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTAc                                                          >  2:2859114/1‑93 (MQ=255)

                                 ccaTCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACaa                                                        <  1:989115/92‑1 (MQ=255)

                                 acaTCTCCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACaa                                                        <  1:4548502/93‑1 (MQ=255)

                                 acaTCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGGCCACCTTGCGCTCTTTCAACTGCTCGGCGCGAGTTACaa                                                        >  2:3652118/1‑93 (MQ=255)

                                 acaTCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACaa                                                        >  2:2500259/1‑93 (MQ=255)

                                  caTCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAAt                                                       <  2:4567993/93‑1 (MQ=255)

                                  caTCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAAt                                                       >  1:3508808/1‑93 (MQ=255)

                                  caTCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAAt                                                       >  2:1039788/1‑93 (MQ=255)

                                  caTCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAAt                                                       >  2:2224787/1‑93 (MQ=255)

                                  caTCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAAt                                                       <  1:3175028/93‑1 (MQ=255)

                                   aTCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATc                                                      >  2:137064/1‑93 (MQ=255)

                                       ccGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTa                                                  >  1:2218482/1‑93 (MQ=255)

                                       ccGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTa                                                  <  1:1862571/93‑1 (MQ=255)

                                       ccGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTa                                                  <  1:1669465/93‑1 (MQ=255)

                                         gCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACg                                                >  1:2884395/1‑93 (MQ=255)

                                            aGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCa                                             >  1:1452708/1‑93 (MQ=255)

                                             gCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCaa                                            <  1:3606256/93‑1 (MQ=255)

                                             gCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCaa                                            >  1:4673323/1‑93 (MQ=255)

                                             gCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCaa                                            >  1:4356104/1‑93 (MQ=255)

                                               aCCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATc                                          <  1:1691982/93‑1 (MQ=255)

                                                ccAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCa                                         >  2:926654/1‑93 (MQ=255)

                                                   gCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAgcg                                      >  2:1891513/1‑93 (MQ=255)

                                                    cccTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAgcgc                                     >  1:2914932/1‑93 (MQ=255)

                                                    cccTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAgcgc                                     >  1:3294078/1‑93 (MQ=255)

                                                     ccTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGcc                                    >  1:1195203/1‑93 (MQ=255)

                                                      cTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGcca                                   <  2:3197901/93‑1 (MQ=255)

                                                      cTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGcca                                   >  2:3452908/1‑93 (MQ=255)

                                                        tttttCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGccacc                                 >  2:42386/1‑93 (MQ=255)

                                                           ttCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGa                              <  2:2292343/93‑1 (MQ=255)

                                                            tCAGATTGACCTCTTCGGCTTTAATGCCCTCCTTGCGCTCCTTCAACTGCGCGGTGCGAGTTTCAACCCCTACGCCAATCAGCGCCACCAGaa                             <  2:3969738/93‑1 (MQ=255)

                                                             cAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGAGCCACCACAAc                            >  2:35693/1‑93 (MQ=255)

                                                              aGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACg                           >  2:3227128/1‑93 (MQ=255)

                                                              aGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACg                           >  1:2327961/1‑93 (MQ=255)

                                                               gATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGc                          >  1:1323137/1‑93 (MQ=255)

                                                               gATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGc                          >  2:3704554/1‑93 (MQ=255)

                                                               gATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGc                          >  1:1910243/1‑93 (MQ=255)

                                                               gATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGc                          >  1:2067077/1‑93 (MQ=255)

                                                                aTTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGcc                         >  2:1031406/1‑93 (MQ=255)

                                                                aTTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGcc                         <  2:1638909/93‑1 (MQ=255)

                                                                 ttGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCg                        <  1:2445401/93‑1 (MQ=255)

                                                                  tGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGa                       <  1:3949768/93‑1 (MQ=255)

                                                                   gAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAg                      >  1:4083477/1‑93 (MQ=255)

                                                                     aCTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAAGGCCGAGCa                    >  2:1532729/1‑93 (MQ=255)

                                                                     aCTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCa                    >  2:2417747/1‑93 (MQ=255)

                                                                     aCTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCa                    >  2:3604922/1‑93 (MQ=255)

                                                                      ctctTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCaa                   >  2:1149354/1‑93 (MQ=255)

                                                                      ctctTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCaa                   >  1:1920568/1‑93 (MQ=255)

                                                                       tctTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAAc                  >  2:3069882/1‑93 (MQ=255)

                                                                       tctTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAAc                  <  1:1502640/93‑1 (MQ=255)

                                                                        ctTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACg                 >  2:2738915/1‑93 (MQ=255)

                                                                        ctTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACg                 >  2:824406/1‑93 (MQ=255)

                                                                         ttCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGt                <  1:2537343/93‑1 (MQ=255)

                                                                         ttCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGt                >  1:2152671/1‑93 (MQ=255)

                                                                           cGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCa              <  2:2962257/93‑1 (MQ=255)

                                                                            ggCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCAt             <  1:3455897/93‑1 (MQ=255)

                                                                            ggCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCAt             <  1:3633524/93‑1 (MQ=255)

                                                                            ggCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCAt             >  2:1991475/1‑93 (MQ=255)

                                                                             gCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGTGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATg            >  2:4547962/1‑93 (MQ=255)

                                                                             gCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATg            >  2:3272381/1‑93 (MQ=255)

                                                                               tttAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCg          >  1:1313824/1‑93 (MQ=255)

                                                                                    tGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCCGc     <  1:2824072/93‑1 (MQ=255)

                                                                                       ccACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCCGCCtt  <  1:4014762/93‑1 (MQ=255)

                                                                                       ccACCTGGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCCGCCtt  <  2:2107995/93‑1 (MQ=255)

TCGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCATCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCCGCCTT  >  NC_000913/4097533‑4097712

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TCATCGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCATCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCCGCCTTCGGT  >  NC_000913/4097530‑4097716

TCATCGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCAC                                                                                               >  SRR4302535.3696780/1‑94 (MQ=60)

 CATCGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACC                                                                                              >  SRR4302535.4058611/1‑94 (MQ=60)

 CATCGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTGTCAGATTGAACTCTTCGGCTTTAATGCCCACC                                                                                              <  SRR4302535.3442131/94‑1 (MQ=60)

  ATCGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCT                                                                                             >  SRR4302535.2899480/1‑94 (MQ=60)

  ATCGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCT                                                                                             <  SRR4302535.309371/94‑1 (MQ=60)

  ATCGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCT                                                                                             <  SRR4302535.3797746/94‑1 (MQ=60)

   TCGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTT                                                                                            <  SRR4302535.337863/94‑1 (MQ=60)

    CGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTG                                                                                           <  SRR4302535.2785134/94‑1 (MQ=60)

    CGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTG                                                                                           >  SRR4302535.3676916/1‑94 (MQ=60)

    CGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTG                                                                                           <  SRR4302535.374280/94‑1 (MQ=60)

    CGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTG                                                                                           >  SRR4302535.4082695/1‑94 (MQ=60)

     GCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGC                                                                                          <  SRR4302535.907158/94‑1 (MQ=60)

      CAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCG                                                                                         >  SRR4302535.2286534/1‑94 (MQ=60)

      CAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCG                                                                                         >  SRR4302535.3516/1‑94 (MQ=60)

       AAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGC                                                                                        >  SRR4302535.3669235/1‑94 (MQ=60)

        AAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCT                                                                                       >  SRR4302535.1119389/1‑94 (MQ=60)

        AAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCT                                                                                       <  SRR4302535.4607973/94‑1 (MQ=60)

         AGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTC                                                                                      <  SRR4302535.3040133/94‑1 (MQ=60)

         AGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTC                                                                                      >  SRR4302535.3785039/1‑94 (MQ=60)

          GGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCT                                                                                     <  SRR4302535.4100887/94‑1 (MQ=60)

             CATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTC                                                                                  <  SRR4302535.2284254/94‑1 (MQ=60)

             CATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTC                                                                                  >  SRR4302535.4442151/1‑94 (MQ=60)

              ATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCA                                                                                 >  SRR4302535.81654/1‑94 (MQ=60)

               TCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAA                                                                                >  SRR4302535.1947412/1‑94 (MQ=60)

                CCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAAC                                                                               <  SRR4302535.430521/94‑1 (MQ=60)

                CCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAAC                                                                               <  SRR4302535.4320011/94‑1 (MQ=60)

                 CCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACT                                                                              <  SRR4302535.2898635/94‑1 (MQ=60)

                  CGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTG                                                                             <  SRR4302535.1232737/94‑1 (MQ=60)

                    GCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCC                                                                           <  SRR4302535.2138331/94‑1 (MQ=60)

                    GCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCC                                                                           <  SRR4302535.4439284/94‑1 (MQ=60)

                    GCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCC                                                                           <  SRR4302535.2950476/94‑1 (MQ=60)

                     CAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCC                                                                          >  SRR4302535.3726643/1‑94 (MQ=60)

                      AGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGACCTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCG                                                                         <  SRR4302535.2527976/94‑1 (MQ=60)

                      AGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCG                                                                         >  SRR4302535.3680178/1‑94 (MQ=60)

                      AGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCG                                                                         >  SRR4302535.677240/1‑94 (MQ=60)

                      AGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCG                                                                         >  SRR4302535.847631/1‑94 (MQ=60)

                        AGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGC                                                                       >  SRR4302535.2343318/1‑94 (MQ=60)

                          AAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGC                                                                     >  SRR4302535.3630888/1‑94 (MQ=60)

                           AAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCG                                                                    >  SRR4302535.2735318/1‑94 (MQ=60)

                           AAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCG                                                                    >  SRR4302535.626599/1‑94 (MQ=60)

                             ATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAG                                                                  >  SRR4302535.1691899/1‑94 (MQ=60)

                              TGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGT                                                                 <  SRR4302535.20538/94‑1 (MQ=60)

                              TGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGT                                                                 >  SRR4302535.2872309/1‑94 (MQ=60)

                               GCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTT                                                                <  SRR4302535.3823878/94‑1 (MQ=60)

                                 CGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTAC                                                              <  SRR4302535.3277349/94‑1 (MQ=60)

                                 CGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTAC                                                              >  SRR4302535.1117409/1‑94 (MQ=60)

                                 CGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTAC                                                              >  SRR4302535.3855957/1‑94 (MQ=60)

                                    CCATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAAT                                                           <  SRR4302535.996139/94‑1 (MQ=60)

                                    ACATCTCCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAAT                                                           <  SRR4302535.4579601/94‑1 (MQ=60)

                                    ACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAAT                                                           >  SRR4302535.3533193/1‑94 (MQ=60)

                                    ACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAAT                                                           >  SRR4302535.2053744/1‑94 (MQ=60)

                                     CATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATC                                                          <  SRR4302535.3197000/94‑1 (MQ=60)

                                      ATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGTGAGTTACAATCC                                                         <  SRR4302535.869787/94‑1 (MQ=60)

                                       TCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCC                                                        <  SRR4302535.3254086/94‑1 (MQ=60)

                                        CACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCT                                                       >  SRR4302535.2805474/1‑94 (MQ=60)

                                         ACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTA                                                      >  SRR4302535.2234267/1‑94 (MQ=60)

                                          CCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTAC                                                     <  SRR4302535.1681543/94‑1 (MQ=60)

                                          CCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTAC                                                     <  SRR4302535.1876003/94‑1 (MQ=60)

                                           CGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACG                                                    >  SRR4302535.2904805/1‑94 (MQ=60)

                                           CGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACG                                                    >  SRR4302535.3786347/1‑94 (MQ=60)

                                             CCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCC                                                  >  SRR4302535.2760549/1‑94 (MQ=60)

                                              CAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCA                                                 <  SRR4302535.219317/94‑1 (MQ=60)

                                              CAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCA                                                 >  SRR4302535.1463106/1‑94 (MQ=60)

                                               AGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAA                                                >  SRR4302535.4385920/1‑94 (MQ=60)

                                               AGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAA                                                >  SRR4302535.4704879/1‑94 (MQ=60)

                                                GCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAAT                                               <  SRR4302535.3631274/94‑1 (MQ=60)

                                                  ACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCA                                             <  SRR4302535.1704221/94‑1 (MQ=60)

                                                  ACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCA                                             >  SRR4302535.3278189/1‑94 (MQ=60)

                                                   CCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAG                                            >  SRR4302535.4078500/1‑94 (MQ=60)

                                                     AGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCG                                          <  SRR4302535.1929961/94‑1 (MQ=60)

                                                     AGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCG                                          <  SRR4302535.2164663/94‑1 (MQ=60)

                                                      GCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGC                                         >  SRR4302535.3316979/1‑94 (MQ=60)

                                                      GCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGC                                         >  SRR4302535.2935518/1‑94 (MQ=60)

                                                       CCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCGCTACGCCAATCAGCGCC                                        >  SRR4302535.674936/1‑94 (MQ=60)

                                                       CCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCC                                        >  SRR4302535.1203762/1‑94 (MQ=60)

                                                       CCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCC                                        >  SRR4302535.2396072/1‑94 (MQ=60)

                                                        CCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCA                                       >  SRR4302535.2465045/1‑94 (MQ=60)

                                                        CCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCA                                       <  SRR4302535.2926416/94‑1 (MQ=60)

                                                        CCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCA                                       >  SRR4302535.2923817/1‑94 (MQ=60)

                                                         CTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTCCAATCCCTACGCCAATCAGCGCCAC                                      >  SRR4302535.812899/1‑94 (MQ=60)

                                                         CTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCAC                                      >  SRR4302535.2633908/1‑94 (MQ=60)

                                                           TTTTTCAGATTGAATTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCA                                    <  SRR4302535.1695798/94‑1 (MQ=60)

                                                            TTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAG                                   <  SRR4302535.3633728/94‑1 (MQ=60)

                                                            TTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAG                                   <  SRR4302535.1328405/94‑1 (MQ=60)

                                                              TTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAA                                 >  SRR4302535.4001662/1‑94 (MQ=60)

                                                               TCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAAC                                <  SRR4302535.2344516/94‑1 (MQ=60)

                                                                CAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCCCCAGAACG                               >  SRR4302535.354344/1‑94 (MQ=60)

                                                                CAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACG                               >  SRR4302535.2344615/1‑94 (MQ=60)

                                                                CAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACG                               <  SRR4302535.3185362/94‑1 (MQ=60)

                                                                 AGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGC                              >  SRR4302535.1924011/1‑94 (MQ=60)

                                                                 AGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGC                              >  SRR4302535.2081978/1‑94 (MQ=60)

                                                                 AGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGC                              >  SRR4302535.394201/1‑94 (MQ=60)

                                                                 AGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGC                              >  SRR4302535.1332579/1‑94 (MQ=60)

                                                                  GATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCC                             <  SRR4302535.4416852/94‑1 (MQ=60)

                                                                   ATTTAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCG                            <  SRR4302535.4186390/94‑1 (MQ=60)

                                                                   ATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCG                            >  SRR4302535.2235302/1‑94 (MQ=60)

                                                                    TTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGA                           <  SRR4302535.2463016/94‑1 (MQ=60)

                                                                     TGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAG                          >  SRR4302535.4111403/1‑94 (MQ=60)

                                                                     TGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAG                          <  SRR4302535.3976735/94‑1 (MQ=60)

                                                                        ACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAA                       >  SRR4302535.970232/1‑94 (MQ=60)

                                                                        ACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAA                       >  SRR4302535.1934412/1‑94 (MQ=60)

                                                                         CTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAAC                      >  SRR4302535.622105/1‑94 (MQ=60)

                                                                          TCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACG                     <  SRR4302535.1513450/94‑1 (MQ=60)

                                                                           CTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGT                    >  SRR4302535.2168146/1‑94 (MQ=60)

                                                                            TTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTC                   <  SRR4302535.1840651/94‑1 (MQ=60)

                                                                            TTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTC                   <  SRR4302535.2555621/94‑1 (MQ=60)

                                                                               GGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATG                <  SRR4302535.3479917/94‑1 (MQ=60)

                                                                               GGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATG                <  SRR4302535.3658704/94‑1 (MQ=60)

                                                                                 CTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCG              >  SRR4302535.1323213/1‑94 (MQ=60)

                                                                                    TAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCC           >  SRR4302535.1501969/1‑94 (MQ=60)

                                                                                    TAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCC           <  SRR4302535.1886012/94‑1 (MQ=60)

                                                                                      ATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCGCTACGCCAATCCGCGCCACCAGAACGCCGAGCAACGTCCTGCGTCCGC         >  SRR4302535.1462550/1‑94 (MQ=60)

                                                                                      ATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCCGC         >  SRR4302535.1616973/1‑94 (MQ=60)

                                                                                       TGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCCGCC        <  SRR4302535.2844118/94‑1 (MQ=60)

                                                                                          CCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCCGCCTTC     <  SRR4302535.4543503/94‑1 (MQ=60)

                                                                                          CCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCCGCCTTC     <  SRR4302535.4042220/94‑1 (MQ=60)

                                                                                           CACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCCGCCTTCG    <  SRR4302535.2703604/94‑1 (MQ=60)

                                                                                            ACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCCGCCTTCGG   >  SRR4302535.2133187/1‑94 (MQ=60)

                                                                                            ACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGCCATGCGTCCGCCTTCGG   >  SRR4302535.4048780/1‑94 (MQ=60)

                                                                                             CCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCCGCCTTCGGT  <  SRR4302535.3959846/94‑1 (MQ=60)

TCATCGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCATCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCCGCCTTCGGT  >  NC_000913/4097530‑4097716

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`