Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	888,315	C→T	G243D (GGC→GAC)	b0847 ←	putative transport protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	888,315	0	C	T	99.6%	888.8 / NA	246	G243D (GGC→GAC)	b0847	putative transport protein
Reads supporting (aligned to +/- strand): ref base C (0/1); new base T (134/111); total (134/112)
Fisher's exact test for biased strand distribution p-value = 4.55e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 257 total aligned reads displayed.

ACCAACGCTATTTCATCGCCCATTTGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGCCGACGCGATAGGCGCGGATCACC  >  NC_000913/888225‑888404

aCCAACGCTATTTCATCGCCCATTTGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCg                                                                                         <  2:9376289/93‑1 (MQ=255)

  cAACGCTATTTCATCGCCCATTTGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGt                                                                                       <  2:4737785/93‑1 (MQ=255)

    aCGCTATTTCATCGCCCATTTGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGttt                                                                                     >  2:8823997/1‑93 (MQ=255)

     cGCTATTTCATCGCCCATTTGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGGTCAATGTAGCAGTCGGTTTg                                                                                    >  1:4791429/1‑93 (MQ=255)

      gCTATTTCATCGCCCATTTGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGt                                                                                   <  2:1476279/93‑1 (MQ=255)

      gCTATTTCATCGCCCATTTGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGt                                                                                   >  1:3086189/1‑93 (MQ=255)

       cTATTTCATCGCCCATTTGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTc                                                                                  <  1:444589/93‑1 (MQ=255)

        tATTTCATCGCCCATTTGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCg                                                                                 <  2:385571/93‑1 (MQ=255)

        tATTTCATCGCCCATTTGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCg                                                                                 <  1:1915619/93‑1 (MQ=255)

          tttCATCGCCCATTTGTAGCACGGCATCCCCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGAt                                                                               <  1:6022/93‑1 (MQ=255)

          tttCATCGCCCATTTGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGAt                                                                               >  1:507365/1‑93 (MQ=255)

           ttCATCGCCCATTTGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATa                                                                              <  1:9643429/93‑1 (MQ=255)

           ttCATCGCCCATTTGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATa                                                                              <  2:7429470/93‑1 (MQ=255)

             cATCGCCCATTTGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATaaa                                                                            <  1:368632/93‑1 (MQ=255)

              aTCGCCCATTTGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAAt                                                                           <  2:4010125/93‑1 (MQ=255)

               tCGCCCATTTGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATa                                                                          >  2:5276054/1‑93 (MQ=255)

                cGCCCATTTGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATAc                                                                         <  1:6418690/93‑1 (MQ=255)

                cGCCCATTTGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATAc                                                                         <  1:7857695/93‑1 (MQ=255)

                 gCCCATTTGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATAcc                                                                        >  2:3955962/1‑93 (MQ=255)

                 gCCCATTTGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATAcc                                                                        <  2:9060702/93‑1 (MQ=255)

                   ccATTTGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCa                                                                      >  1:8186705/1‑93 (MQ=255)

                    cATTTGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAg                                                                     <  2:5209082/93‑1 (MQ=255)

                     aTTTGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGt                                                                    >  2:443098/1‑93 (MQ=255)

                      tttGTAGCACGGCATCACCGTCTGGTTTTGCCAGAATCCCGTTACGTAGAATACGCTCAATGTACCCGGCAGTTTGTCGATAAATAGCCAgag                                                                   >  2:4377157/1‑91 (MQ=255)

                      tttGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGtt                                                                   >  1:2623235/1‑93 (MQ=255)

                       ttGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTc                                                                  >  1:6966411/1‑93 (MQ=255)

                        tGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCa                                                                 <  1:9337861/93‑1 (MQ=255)

                            gCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCa                                                             <  2:2701988/93‑1 (MQ=255)

                              aCGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGa                                                           >  1:5127577/1‑93 (MQ=255)

                               cGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGAt                                                          <  2:4179800/93‑1 (MQ=255)

                                ggCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGAtt                                                         <  2:8779698/93‑1 (MQ=255)

                                  cATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATGCCCAGTTCACGCAGAtttt                                                       <  2:6339049/93‑1 (MQ=255)

                                  cATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGAtttt                                                       >  1:6360194/1‑93 (MQ=255)

                                   aTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGAttttt                                                      <  2:4052968/93‑1 (MQ=255)

                                    tCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGAtttttc                                                     >  2:7090164/1‑92 (MQ=255)

                                    tCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTg                                                     >  1:105274/1‑93 (MQ=255)

                                    tCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTg                                                     >  1:1487666/1‑93 (MQ=255)

                                    tCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTg                                                     >  2:6067226/1‑93 (MQ=255)

                                     cACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGc                                                    <  1:6838790/93‑1 (MQ=255)

                                      cccGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGcc                                                   <  1:7896526/92‑1 (MQ=255)

                                       ccGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCg                                                  >  2:625277/1‑93 (MQ=255)

                                        cGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGt                                                 >  1:9788395/1‑93 (MQ=255)

                                         gTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTc                                                <  1:5798264/93‑1 (MQ=255)

                                          tCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCg                                               >  2:3505532/1‑93 (MQ=255)

                                          tCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCg                                               >  2:536287/1‑93 (MQ=255)

                                           cTGGATTTGCCATAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCgg                                              <  2:4204484/93‑1 (MQ=255)

                                            tGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGt                                             >  1:4097385/1‑93 (MQ=255)

                                            tGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGt                                             >  2:8090501/1‑93 (MQ=255)

                                              gATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTcc                                           >  2:4141274/1‑93 (MQ=255)

                                              gATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTcc                                           >  2:8895279/1‑93 (MQ=255)

                                               aTTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCa                                          >  2:6478956/1‑93 (MQ=255)

                                               aTTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCa                                          <  2:2575820/93‑1 (MQ=255)

                                               aTTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCa                                          >  2:5158902/1‑93 (MQ=255)

                                                tttGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAg                                         >  2:7746823/1‑93 (MQ=255)

                                                tttGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAg                                         <  2:2029447/93‑1 (MQ=255)

                                                 ttGCCAGAATCTCGTTACGTCGAATACGTTCAATGTAGGAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAgg                                        <  1:9506102/93‑1 (MQ=255)

                                                  tGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATACATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGc                                       >  1:9021885/1‑93 (MQ=255)

                                                    ccAGAATCCCGTTACGTCGAATACGTTCCATGTAGCAGTCGGTTTGTCGATAAATACACAGTTCACGCAGATTTTTGACGTCGGTCCAGGaca                                     >  2:1702536/1‑93 (MQ=255)

                                                      aGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGccacc                                   >  2:3298502/1‑93 (MQ=255)

                                                        aaTCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAg                                 >  2:4665684/1‑93 (MQ=255)

                                                        aaTCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCAGTCCAGGCCACCAg                                 >  2:4849290/1‑93 (MQ=255)

                                                          tCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGtt                               >  2:9551576/1‑93 (MQ=255)

                                                           cccGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTc                              <  1:4072465/93‑1 (MQ=255)

                                                            ccGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTACCGTCGGTCCAGGCCACCAGTTcc                             >  1:1741140/1‑93 (MQ=255)

                                                             cGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCTCCAGTTCCg                            <  1:4218118/93‑1 (MQ=255)

                                                             cGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCg                            >  1:2271890/1‑93 (MQ=255)

                                                              gTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCgg                           >  1:3850469/1‑93 (MQ=255)

                                                              gTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCgg                           >  1:567320/1‑93 (MQ=255)

                                                              gTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCgg                           >  2:6570491/1‑93 (MQ=255)

                                                              gTTACGTCGAACACGTTCAATGTAGCAGTCGGTTTGTCGATAAATCCCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCgg                           <  2:7795889/93‑1 (MQ=255)

                                                               ttACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCggg                          >  2:131581/1‑93 (MQ=255)

                                                               ttACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCggg                          >  1:10025802/1‑93 (MQ=255)

                                                                tACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGc                         <  1:3192868/93‑1 (MQ=255)

                                                                tACGGCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGc                         <  2:6756343/93‑1 (MQ=255)

                                                                 aCGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGcc                        >  1:9156062/1‑93 (MQ=255)

                                                                 aCGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGcc                        >  2:2966462/1‑93 (MQ=255)

                                                                  cGTCGAATGCGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGCCg                       >  1:2863899/1‑93 (MQ=255)

                                                                  cGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGCCg                       <  1:2091729/93‑1 (MQ=255)

                                                                  cGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGCCg                       >  1:4651853/1‑93 (MQ=255)

                                                                    tCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGCCGAc                     <  2:5898021/93‑1 (MQ=255)

                                                                    tCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGCAGAc                     >  2:3668034/1‑93 (MQ=255)

                                                                    tCGAATACGTTAAATGTCGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCATATTTTTGCCGACGGTCCAGGCCACCAGTTCCGGGCCGAc                     <  2:8178120/93‑1 (MQ=255)

                                                                       aaTACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGCCGAcgcg                  >  1:6829139/1‑93 (MQ=255)

                                                                       aaTACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGCCGAcgcg                  >  1:8488139/1‑93 (MQ=255)

                                                                       aaTACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGCCGAcgcg                  >  1:9387976/1‑93 (MQ=255)

                                                                       aaTACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGATCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTTCGGGCCGAcgcg                  >  2:7232089/1‑93 (MQ=255)

                                                                        aTACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGCCGACGCGa                 >  2:1095963/1‑93 (MQ=255)

                                                                         tACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGCCGACGCGAt                >  2:5853326/1‑93 (MQ=255)

                                                                          aCGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGCCGACGCGATa               <  1:1267980/93‑1 (MQ=255)

                                                                           cGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGCCGACGCGATAg              <  1:9840532/93‑1 (MQ=255)

                                                                            gTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGCCGACGCGATAgg             <  1:748844/93‑1 (MQ=255)

                                                                            gTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGCCGACGCGATAgg             <  1:2765348/93‑1 (MQ=255)

                                                                              tCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGCCGACGCGATAGgcg           <  2:7976507/93‑1 (MQ=255)

                                                                              tCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGCCGACGCGATAGgcg           >  2:7549628/1‑93 (MQ=255)

                                                                               cAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGCCGACGCGATAGgcgg          >  1:3576017/1‑92 (MQ=255)

                                                                               cAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGCCGACGCGATAGgcgc          <  1:4535269/93‑1 (MQ=255)

                                                                                aaTGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGCCGACGCGATAGGcgcg         >  2:2159988/1‑93 (MQ=255)

                                                                                    tAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGCCGACGCGATAGGCGCGGATc     >  2:8555323/1‑93 (MQ=255)

                                                                                      gcagtCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGCCGACGCGATAGGCGCGGATCAc   >  2:2294549/1‑93 (MQ=255)

                                                                                       cagtCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGCCGACGCGATAGGCGCGGATCAcc  <  2:1055888/93‑1 (MQ=255)

ACCAACGCTATTTCATCGCCCATTTGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGCCGACGCGATAGGCGCGGATCACC  >  NC_000913/888225‑888404

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGCCGACGCGATAGGCGCGGATCACCGGT  >  NC_000913/888223‑888407

CTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTC                                                                                             >  SRR4302540.3040880/1‑94 (MQ=60)

CTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTC                                                                                             >  SRR4302540.1839961/1‑94 (MQ=60)

CTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCATCACCATCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTC                                                                                             >  SRR4302540.6716203/1‑94 (MQ=60)

     AACGCTATTTCATCGCCCATTTGTAGCACGGCATCCCCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTT                                                                                        <  SRR4302540.738315/94‑1 (MQ=60)

     AACGCTATTTCATCGCCCATTTGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTT                                                                                        <  SRR4302540.7721488/94‑1 (MQ=60)

     AACGCTATTTCATCGCCCATTTGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTT                                                                                        >  SRR4302540.1978149/1‑94 (MQ=60)

      ACGCTATTTCATCGCCCATTTGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTG                                                                                       <  SRR4302540.4530993/94‑1 (MQ=60)

      ACGCTATTTCATCGCCCATTTGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTG                                                                                       >  SRR4302540.8475586/1‑94 (MQ=60)

      ACGCTATTTCATCGCCCATTTGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTG                                                                                       >  SRR4302540.9227945/1‑94 (MQ=60)

      ACGCTATTTCATCGCCCATTTGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTG                                                                                       >  SRR4302540.2977124/1‑94 (MQ=60)

      ACGCTATTTCATCGCCCATTTGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGGTCAATGTAGCAGTCGGTTTG                                                                                       >  SRR4302540.4842676/1‑94 (MQ=60)

       CGCTATTTCATCGCCCATTTGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGT                                                                                      >  SRR4302540.146066/1‑94 (MQ=60)

       CGCTATTTCATCGCCCATTTGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGT                                                                                      >  SRR4302540.3120052/1‑94 (MQ=60)

         CTATTTCATCGCCCATTTGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCG                                                                                    <  SRR4302540.449322/94‑1 (MQ=60)

         CTATTTCATCGCCCATTTGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCG                                                                                    >  SRR4302540.7976091/1‑94 (MQ=60)

          TATTTCATCGCCCATTTGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTCCGTCGAATACGTTCAATGTAGCAGTGGGTTTGTCGA                                                                                   >  SRR4302540.9922606/1‑94 (MQ=60)

          TATTTCATCGCCCATTTGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGA                                                                                   <  SRR4302540.1936526/94‑1 (MQ=60)

          TATTTCATCGCCCATTTGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGA                                                                                   >  SRR4302540.9289928/1‑94 (MQ=60)

           ATTTCATCGCCCATTTGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGAT                                                                                  <  SRR4302540.10145926/94‑1 (MQ=60)

           ATTTCATCGCCCATTTGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGAT                                                                                  >  SRR4302540.512802/1‑94 (MQ=60)

            TTTCATCGCCCATTTGTAGCACGGCATCCCCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATA                                                                                 <  SRR4302540.6090/94‑1 (MQ=60)

            TTTCATCGCCCATTTGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTAGGTTTGTCGATA                                                                                 >  SRR4302540.4733992/1‑94 (MQ=60)

            TTTCATCGACCAATTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTTTGTCGATA                                                                                 <  SRR4302540.6501199/94‑1 (MQ=60)

             TTCATCGCCCATTTGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAA                                                                                <  SRR4302540.9757014/94‑1 (MQ=60)

               TATCGTCCATTTGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAAT                                                                              <  SRR4302540.4882828/94‑1 (MQ=60)

               CATCGCCCATTTGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAAT                                                                              <  SRR4302540.372431/94‑1 (MQ=60)

                 TCGCCCATTTGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATAC                                                                            >  SRR4302540.6072070/1‑94 (MQ=60)

                  CGCCGATTTGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACC                                                                           <  SRR4302540.5114328/94‑1 (MQ=60)

                  CGCCCATTTGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACC                                                                           >  SRR4302540.3955947/1‑94 (MQ=60)

                  CGCCCATTTGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACC                                                                           <  SRR4302540.6490130/94‑1 (MQ=60)

                  CGCCCATTTGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACC                                                                           <  SRR4302540.7949509/94‑1 (MQ=60)

                    CCCATTTGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCA                                                                         >  SRR4302540.8281811/1‑94 (MQ=60)

                    CCCATTTGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCA                                                                         >  SRR4302540.3999279/1‑94 (MQ=60)

                    CCCATTTGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCA                                                                         <  SRR4302540.376100/94‑1 (MQ=60)

                     CCATTTGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAG                                                                        <  SRR4302540.8685056/94‑1 (MQ=60)

                      CATTTGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGT                                                                       <  SRR4302540.2694300/94‑1 (MQ=60)

                       ATTTGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTT                                                                      >  SRR4302540.2651599/1‑94 (MQ=60)

                       ATTTGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTT                                                                      <  SRR4302540.1242524/94‑1 (MQ=60)

                        TTTGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTC                                                                     >  SRR4302540.7043870/1‑94 (MQ=60)

                        TTTGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTC                                                                     >  SRR4302540.5447549/1‑94 (MQ=60)

                          TGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCAC                                                                   <  SRR4302540.9449157/94‑1 (MQ=60)

                           GTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACG                                                                  >  SRR4302540.5811672/1‑94 (MQ=60)

                               CACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGA                                                              >  SRR4302540.5183110/1‑94 (MQ=60)

                                ACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGAT                                                             <  SRR4302540.1552341/94‑1 (MQ=60)

                                 CGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATT                                                            <  SRR4302540.9243853/94‑1 (MQ=60)

                                 CGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATT                                                            <  SRR4302540.9475484/94‑1 (MQ=60)

                                  GGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTT                                                           <  SRR4302540.295241/94‑1 (MQ=60)

                                   GCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTT                                                          >  SRR4302540.6431019/1‑94 (MQ=60)

                                     ATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTG                                                        >  SRR4302540.106397/1‑94 (MQ=60)

                                     ATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTG                                                        >  SRR4302540.3349749/1‑94 (MQ=60)

                                     ATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTG                                                        <  SRR4302540.4133738/94‑1 (MQ=60)

                                     ATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTG                                                        >  SRR4302540.1504012/1‑94 (MQ=60)

                                     ATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTG                                                        <  SRR4302540.6917625/94‑1 (MQ=60)

                                     ATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTC                                                        >  SRR4302540.6151984/1‑94 (MQ=60)

                                       CACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCC                                                      <  SRR4302540.6914537/94‑1 (MQ=60)

                                        CCCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCG                                                     <  SRR4302540.7988653/94‑1 (MQ=60)

                                        ACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCG                                                     <  SRR4302540.6467749/94‑1 (MQ=60)

                                         CCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGT                                                    <  SRR4302540.8082717/94‑1 (MQ=60)

                                         CCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGT                                                    >  SRR4302540.9903073/1‑94 (MQ=60)

                                           GTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCG                                                  <  SRR4302540.5862337/94‑1 (MQ=60)

                                            TCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGG                                                 >  SRR4302540.4254016/1‑94 (MQ=60)

                                            TCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGG                                                 <  SRR4302540.3189773/94‑1 (MQ=60)

                                             CTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGT                                                >  SRR4302540.4141585/1‑94 (MQ=60)

                                             CTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGT                                                >  SRR4302540.4141586/1‑94 (MQ=60)

                                               ggttttgccgcaatcccgtttactgcAATACGTTTAATGTAGCATGCCGTTTGTCGATAAATACCCAGTTCACTCAGATTTTTGCCGTCGGTCC                                              <  SRR4302540.2670542/68‑1 (MQ=54)

                                               GGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCC                                              <  SRR4302540.2670547/94‑1 (MQ=60)

                                                 ATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATCCCCGGTTCACGCAGATTTTTGCCGTCGGTCCAG                                            <  SRR4302540.6976727/94‑1 (MQ=60)

                                                 ATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAG                                            <  SRR4302540.4507936/94‑1 (MQ=60)

                                                 ATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAG                                            <  SRR4302540.6034291/94‑1 (MQ=60)

                                                  TTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGG                                           <  SRR4302540.9579199/94‑1 (MQ=60)

                                                   TTGCCAGAATCTCGTTACGTCGAATACGTTCAATGTAGGAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGC                                          <  SRR4302540.9618728/94‑1 (MQ=60)

                                                   TTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATACATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGC                                          >  SRR4302540.9130143/1‑94 (MQ=60)

                                                   TTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGC                                          <  SRR4302540.9618729/94‑1 (MQ=60)

                                                     GCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCA                                        <  SRR4302540.6715307/94‑1 (MQ=60)

                                                       CAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACC                                      <  SRR4302540.1845126/94‑1 (MQ=60)

                                                       CAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACC                                      >  SRR4302540.9472747/1‑94 (MQ=60)

                                                       CAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACC                                      >  SRR4302540.4712677/1‑94 (MQ=60)

                                                           ATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTT                                  >  SRR4302540.2126059/1‑94 (MQ=60)

                                                           ATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTT                                  >  SRR4302540.8384934/1‑94 (MQ=60)

                                                           ATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTT                                  <  SRR4302540.965186/94‑1 (MQ=60)

                                                            TCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTC                                 <  SRR4302540.6909748/94‑1 (MQ=60)

                                                             CCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCC                                <  SRR4302540.4116363/94‑1 (MQ=60)

                                                             CCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTACCGTCGGTCCAGGCCACCAGTTCC                                >  SRR4302540.1759975/1‑94 (MQ=60)

                                                              CCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCG                               >  SRR4302540.2296273/1‑94 (MQ=60)

                                                               CGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCTCCAGTTCCGG                              <  SRR4302540.4264039/94‑1 (MQ=60)

                                                               CGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGG                              >  SRR4302540.573487/1‑94 (MQ=60)

                                                               CGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGG                              >  SRR4302540.3892341/1‑94 (MQ=60)

                                                                GTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGG                             >  SRR4302540.10142461/1‑94 (MQ=60)

                                                                GTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGG                             <  SRR4302540.2516679/94‑1 (MQ=60)

                                                                 TTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGC                            <  SRR4302540.568236/94‑1 (MQ=60)

                                                                  TACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGCC                           >  SRR4302540.9265980/1‑94 (MQ=60)

                                                                  TACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGCC                           <  SRR4302540.3227545/94‑1 (MQ=60)

                                                                   ACGTCGAATGCGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGCCG                          >  SRR4302540.2894961/1‑94 (MQ=60)

                                                                   ACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGCCG                          >  SRR4302540.4701634/1‑94 (MQ=60)

                                                                    CGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGCCGA                         >  SRR4302540.5130661/1‑94 (MQ=60)

                                                                    CGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGCCGA                         <  SRR4302540.2114190/94‑1 (MQ=60)

                                                                    CGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGCCGA                         >  SRR4302540.3621352/1‑94 (MQ=60)

                                                                        GAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGCCGACGCG                     >  SRR4302540.9499706/1‑94 (MQ=60)

                                                                        GAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGCCGACGCG                     >  SRR4302540.6904753/1‑94 (MQ=60)

                                                                        GAATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGCCGACGCG                     >  SRR4302540.8586756/1‑94 (MQ=60)

                                                                         AATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGCCGACGCGA                    >  SRR4302540.6475697/1‑94 (MQ=60)

                                                                          ATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGCCGACGCGAT                   <  SRR4302540.8134735/94‑1 (MQ=60)

                                                                          ATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGCCGACGCGAT                   >  SRR4302540.3823864/1‑94 (MQ=60)

                                                                          ATACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGCCGACGCGAT                   >  SRR4302540.10027937/1‑94 (MQ=60)

                                                                           TACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGCCGACGCGATA                  <  SRR4302540.7656480/94‑1 (MQ=60)

                                                                            ACGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGCCGACGCGATAG                 <  SRR4302540.1281018/94‑1 (MQ=60)

                                                                             CGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGCCGACGCGATAGG                >  SRR4302540.252265/1‑94 (MQ=60)

                                                                             CGTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGCCGACGCGATAGG                <  SRR4302540.9955578/94‑1 (MQ=60)

                                                                              GTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGCCGACGCGATAGGG               >  SRR4302540.2089077/1‑94 (MQ=60)

                                                                              GTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGCCGACGCGATAGGC               >  SRR4302540.9813191/1‑94 (MQ=60)

                                                                              GTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGCCGACGCGATAGGC               <  SRR4302540.756819/94‑1 (MQ=60)

                                                                              GTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGCCGACGCGATAGGC               >  SRR4302540.9813192/1‑94 (MQ=60)

                                                                              GTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGCCGACGCGATAGGC               <  SRR4302540.2795229/94‑1 (MQ=60)

                                                                              GTTCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGCCGACGCGATAGGC               <  SRR4302540.2795228/94‑1 (MQ=60)

                                                                                TCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGCCGACGCGATAGGCGG             >  SRR4302540.3615074/1‑94 (MQ=60)

                                                                                TCAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGCCGACGCGATAGGCGC             >  SRR4302540.4685570/1‑94 (MQ=60)

                                                                                 CAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGCCGACGCGATAGGCGCG            >  SRR4302540.338572/1‑94 (MQ=60)

                                                                                 CAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGCCGACGCGATAGGCGCG            >  SRR4302540.4472114/1‑94 (MQ=60)

                                                                                 CAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGCCGACGCGATAGGCGCG            <  SRR4302540.4584362/94‑1 (MQ=60)

                                                                                 CAATGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGCCGACGCGATAGGCGCG            >  SRR4302540.4802633/1‑94 (MQ=60)

                                                                                    TGTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGCCGACGCGATAGGCGCGGAT         <  SRR4302540.1124889/94‑1 (MQ=60)

                                                                                     GTAGCAGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGCCGACGCGATAGGCGCGGATC        <  SRR4302540.1538681/94‑1 (MQ=60)

                                                                                          AGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGCCGACGCGATAGGCGCGGATCACCGG   >  SRR4302540.9885497/1‑94 (MQ=60)

                                                                                          AGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGCCGACGCGATAGGCGCGGATCACCGG   >  SRR4302540.6862546/1‑94 (MQ=60)

                                                                                          AGTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGCCGACGCGATAGGCGCGGATCACCGG   >  SRR4302540.6862815/1‑94 (MQ=60)

                                                                                           GTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGCCGACGCGATAGGCGCGGATCACCGGT  <  SRR4302540.3444883/94‑1 (MQ=60)

                                                                                           GTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGCCGACGCGATAGGCGCGGATCACCGGT  >  SRR4302540.4105952/1‑94 (MQ=60)

                                                                                           GTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGCCGACGCGATAGGCGCGGATCACCGGT  >  SRR4302540.9716992/1‑94 (MQ=60)

                                                                                           GTCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGCCGACGCGATAGGCGCGGATCACCGGT  <  SRR4302540.1118779/94‑1 (MQ=60)

CTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTGCCGTCGGTCCAGGCCACCAGTTCCGGGCCGACGCGATAGGCGCGGATCACCGGT  >  NC_000913/888223‑888407

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`