Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1548 |
369.5 |
20095359 |
96.9% |
19472402 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,476,839 |
T→C |
V197A (GTC→GCC) |
b1409 → |
putative phosphatidate cytidiltransferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,476,839 | 0 | T | C | 99.1%
| 711.3
/ NA
| 228 | V197A (GTC→GCC) | b1409 | putative phosphatidate cytidiltransferase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (127/99); minor base G (2/0); total (129/99) |
| Fisher's exact test for biased strand distribution p-value = 5.06e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 239 total aligned reads displayed.
CGTTACTGGTGTTATTTCTTTTGGCATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGTCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACCATCATGATTGCGTCACTGATTATCGGACCGTTAC > NC_000913/1476749‑1476928
|
ggTTTCTGGTGTGATTTCTTTTGGCATTAACCGAGTCAAACGATATTGCACTGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGccc < 2:3353766/92‑1 (MQ=255)
gTTACTGGTGTTATTTCTTTTGGCATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGTCAGAAGAAAAGTGGcccc > 1:4092841/1‑93 (MQ=255)
ttACTGGTGTTATTTCTTTTGGCATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCt > 1:4485592/1‑93 (MQ=255)
ttACTGGTGTTATTTCTTTTGGCATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCt > 1:7652825/1‑93 (MQ=255)
ttACTGGTGTTATTTCTTTTGGCATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCt > 1:9973067/1‑93 (MQ=255)
tACTGGTGTTATTTCTTTTGGCATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTa < 2:538704/93‑1 (MQ=255)
cTGGTGTTATTTCTTTTGGCATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTaaa < 2:6198527/93‑1 (MQ=255)
tGGTGTTATTTCTTTTGGCATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAg > 1:9330707/1‑93 (MQ=255)
ggTGTTATTTCTTTTGGCATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGt > 2:3296137/1‑93 (MQ=255)
tgtTATTTCTTTTGGCATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCa < 2:4574935/93‑1 (MQ=255)
gtTATTTCTTTTGGCATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGACAAGTGGCCCCTAAAGTCAg > 2:4030758/1‑93 (MQ=255)
gtTATTTCTTTTGGCATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAg > 2:7835800/1‑93 (MQ=255)
gtTATTTCTTTTGGCATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAg < 1:8442488/93‑1 (MQ=255)
ttATTTCTTTTGGCATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGc > 2:497460/1‑93 (MQ=255)
tATTTCTTTTGGCATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGcc < 1:2101917/93‑1 (MQ=255)
tATTTCTTTTGGCATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGcc > 1:8897349/1‑93 (MQ=255)
tATTTCTTTTGGCATCAACCGAGTCAAACGTTATTGCACAGTATTTATGGGAAAAATCCTGCAGCAGAAGAAAAGTGGCCCCTAAAGTCAGcc < 2:9387417/93‑1 (MQ=255)
aTTTCTTTTGGCATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGccc > 2:2634599/1‑93 (MQ=255)
cTTTTGGCATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGa > 2:2802454/1‑93 (MQ=255)
cTTTTGGCATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGa > 2:8779637/1‑93 (MQ=255)
ttttGGCATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCgggca > 2:357782/1‑91 (MQ=255)
ttttGGCATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGaa > 1:2980917/1‑93 (MQ=255)
ttGGCATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGaaaa < 1:8113993/93‑1 (MQ=255)
ggCATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAAc < 1:7797499/93‑1 (MQ=255)
gCATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACa < 2:1314127/93‑1 (MQ=255)
gCATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACa < 1:8811411/93‑1 (MQ=255)
gCATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACa < 1:6997179/93‑1 (MQ=255)
cATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACAt > 2:3659494/1‑93 (MQ=255)
cATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACAt > 1:6927826/1‑93 (MQ=255)
cATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACAt < 2:692579/93‑1 (MQ=255)
aTTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACAtt > 1:1684035/1‑93 (MQ=255)
ttAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTg > 1:2640332/1‑93 (MQ=255)
ttAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTg > 2:7633729/1‑93 (MQ=255)
tAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTgg > 1:9191664/1‑93 (MQ=255)
tAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTgg < 1:1597088/93‑1 (MQ=255)
aaCCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGa > 1:2351310/1‑93 (MQ=255)
ccGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAg > 2:592631/1‑93 (MQ=255)
gAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGt > 2:3773618/1‑93 (MQ=255)
aGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTc > 1:6455731/1‑93 (MQ=255)
aGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTc < 1:6289671/93‑1 (MQ=255)
aGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTc > 2:5342872/1‑93 (MQ=255)
aGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTc > 1:385259/1‑93 (MQ=255)
cAAACGATATTGCACAGTATTTATGGGTAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGa < 1:8359178/93‑1 (MQ=255)
cAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGa > 2:155258/1‑93 (MQ=255)
cAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGa < 2:9544858/93‑1 (MQ=255)
cAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGa < 2:9518722/93‑1 (MQ=255)
cAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGa < 1:8403982/93‑1 (MQ=255)
aaaCGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGAt < 2:7162589/93‑1 (MQ=255)
aaCGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATg < 1:4709120/93‑1 (MQ=255)
aaCGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATg > 1:1321887/1‑93 (MQ=255)
aaCGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATg > 2:1009216/1‑93 (MQ=255)
aaCGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATg > 2:8448025/1‑93 (MQ=255)
cGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATggg > 2:5093023/1‑93 (MQ=255)
cGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATggg < 2:5116775/93‑1 (MQ=255)
gATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGggc < 1:1292214/93‑1 (MQ=255)
atatTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGggcg > 2:2766708/1‑93 (MQ=255)
atatTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGggcg < 2:739891/93‑1 (MQ=255)
atatTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGggcg > 2:4269680/1‑93 (MQ=255)
tatTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGggcgg > 2:3096477/1‑93 (MQ=255)
tatTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGggcgg > 2:5603949/1‑93 (MQ=255)
tatTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGggcgg > 2:5250660/1‑93 (MQ=255)
gCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGtc > 1:3429599/1‑93 (MQ=255)
cacaGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGtca > 1:2161188/1‑93 (MQ=255)
cacaGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGtca < 2:8392217/93‑1 (MQ=255)
acaGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGtcat < 2:585365/93‑1 (MQ=255)
caGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGGCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGtcatc > 2:2645479/1‑93 (MQ=255)
aGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGtcatca > 1:5580663/1‑93 (MQ=255)
gTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCAc > 1:9918892/1‑93 (MQ=255)
tATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCAcc > 1:7356447/1‑93 (MQ=255)
ttATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACcatc > 1:5304184/1‑93 (MQ=255)
ttATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACcatc > 2:6176232/1‑93 (MQ=255)
tATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACcatca > 2:7340211/1‑93 (MQ=255)
aTGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACcatcat > 1:8539281/1‑93 (MQ=255)
aTGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACcatcat < 2:2255852/93‑1 (MQ=255)
tGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACCATCATg > 2:9165033/1‑93 (MQ=255)
tGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACCATCATg < 2:8040421/93‑1 (MQ=255)
gggAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACCATCATGAt < 1:1059443/93‑1 (MQ=255)
gggAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACCATCATGAt > 2:8580214/1‑93 (MQ=255)
aaaaTCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACCATCATGATTGc > 1:5701791/1‑93 (MQ=255)
aTCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACCATCATGATTGCGTc > 1:5164992/1‑93 (MQ=255)
tCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACCATCATGATTGCGTCa > 2:5453774/1‑93 (MQ=255)
cTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACCATCATGATTGCGTCACt < 1:6541191/93‑1 (MQ=255)
cTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACCATCATGATTGCGTCACt < 1:9385000/93‑1 (MQ=255)
cGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACCATCATGATTGCGTCACTGAt < 2:8265867/93‑1 (MQ=255)
cAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACCATCATGATTGCGTCACTGATTAt > 1:3228865/1‑93 (MQ=255)
cAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACCATCATGATTGCGTCACTGATTAt < 1:8105588/93‑1 (MQ=255)
cAGAAGAAAAGTGGCCCCTAAAATCAGCGCGGGAAAAGCATTGGAAGGTCTGATGGGCGGCGTCATCACCATCATGATTGCGTCACTGATTAt < 1:46341/93‑1 (MQ=255)
cAGAAGAAAAGTGCCCCCTAAAGTAAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACAATCATGATTGCGTCAAAGATTAt < 2:3838501/93‑1 (MQ=255)
agaagaAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACCATCATGATTGCGTCACTGATTATc > 2:1988035/1‑93 (MQ=255)
agaagaAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACCATCATGATTGCGTCACTGATTATc < 2:4719842/93‑1 (MQ=255)
gaagaaAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACCATCATGATTGCGTCACTGATTATCg > 1:2043837/1‑93 (MQ=255)
gaagaaAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACCATCATGATTGCGTCACTGATTATCg < 2:3424770/93‑1 (MQ=255)
gaaAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACCATCATGATTGCGTCACTGATTATCGGAc < 2:6672743/93‑1 (MQ=255)
gaaAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACCATCATGATTGCGTCACTGATTATCGGAc > 1:549469/1‑93 (MQ=255)
gaaAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACCATCATGATTGCGTCACTGATTATCGGAc > 1:926021/1‑93 (MQ=255)
aaaaGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACCATCATGATTGCGTCACTGATTATCGGAcc > 1:4347811/1‑93 (MQ=255)
aaaGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACCATCATGATTGCGTCACTGATTATCGGACCg < 2:5765900/93‑1 (MQ=255)
aaGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACCATCATGATTGCGTCACTGATTATCGGACCGt < 1:4030759/93‑1 (MQ=255)
aaGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACCATCATGATTGCGTCACTGATTATCGGACCGt < 1:9109539/93‑1 (MQ=255)
aaGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACCATCATGATTGCGTCACTGATTATCGGACCGt > 1:1798479/1‑93 (MQ=255)
|
CGTTACTGGTGTTATTTCTTTTGGCATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGTCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACCATCATGATTGCGTCACTGATTATCGGACCGTTAC > NC_000913/1476749‑1476928
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GGCGTTACTGGTGTTATTTCTTTTGGCATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGTCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACCATCATGATTGCGTCACTGATTATCGGACCGTTACTGAC > NC_000913/1476747‑1476932
|
GGCGTTACTGGTGTTATTTCTTTTGGCATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCC < SRR4302540.6586766/94‑1 (MQ=60)
GGCGTTACTGGTGTTATTTCTTTTGGCATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCC < SRR4302540.1959892/94‑1 (MQ=60)
CGTTACTGGTGTTATTTCTTTTGGCATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGTCAGAAGAAAAGTGGCCCC > SRR4302540.4136998/1‑94 (MQ=60)
CGTTACTGGTGTTATTTCTTTTGGCATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCC > SRR4302540.7155169/1‑94 (MQ=60)
GTTACTGGTGTTATTTCTTTTGGCATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCT > SRR4302540.10089388/1‑94 (MQ=60)
GTTACTGGTGTTATTTCTTTTGGCATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCT > SRR4302540.10089390/1‑94 (MQ=60)
GTTACTGGTGTTATTTCTTTTGGCATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCT > SRR4302540.7738973/1‑94 (MQ=60)
GTTACTGGTGTTATTTCTTTTGGCATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCT > SRR4302540.4534244/1‑94 (MQ=60)
GTTACTGGTGTTATTTCTTTTGGCATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCT > SRR4302540.1918036/1‑94 (MQ=60)
TTACTGGTGTTATTTCTTTTGGCATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTA > SRR4302540.1729749/1‑94 (MQ=60)
TACTGGTGTTATTTCTTTTGGCATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAA > SRR4302540.9972409/1‑94 (MQ=60)
ACTGGTGTTATTTCTTTTGGCATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATTCTGCGGCAGAAGAAAAGTGGCCCCTAAA < SRR4302540.4892341/94‑1 (MQ=60)
ACTGGTGTTATTTCTTTTGGCATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAA > SRR4302540.863328/1‑94 (MQ=60)
ACTGATATTATTTCTTATGTCTTTAACCGAGTCAAACGATATTGCACAGTATGTATGGATAAAATCGTGCGGCAGAAGAAAAGTGGCCCCTAAA < SRR4302540.5435330/94‑1 (MQ=48)
CTGGTGTTATTTCTTTTGGCATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAG > SRR4302540.9441961/1‑94 (MQ=60)
TGGTGTTATTTCTTTTGGCATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGT < SRR4302540.4729616/94‑1 (MQ=60)
GTGTTATTTCTTTTGGCATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCA > SRR4302540.8633284/1‑94 (MQ=60)
GTGTTATTTCTTTTGGCATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCA > SRR4302540.5836995/1‑94 (MQ=60)
TGTTATTTCTTTTGGCATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAG < SRR4302540.8519738/94‑1 (MQ=60)
GTTATTTCTTTTGGCATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGC < SRR4302540.8540492/94‑1 (MQ=60)
TTATTTCTTTTGGCATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCC > SRR4302540.9000343/1‑94 (MQ=60)
TTATTTCTTTTGGCATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCC > SRR4302540.9000344/1‑94 (MQ=60)
TTATTTCTTTTGGCATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCC > SRR4302540.9000345/1‑94 (MQ=60)
TATTTCTTTTGGCATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGCAAAGTGGCCCCTAAAGTCAGCCC > SRR4302540.4457373/1‑94 (MQ=60)
TATTTCTTTTGGCATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCC > SRR4302540.840911/1‑94 (MQ=60)
TATTTCTTTTGGCATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCC < SRR4302540.2124477/94‑1 (MQ=60)
TTTCTTTTGGCATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGG < SRR4302540.8551431/94‑1 (MQ=60)
TTCTTTTGGCATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGG < SRR4302540.3290278/94‑1 (MQ=60)
TCTTTTGGCATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGA < SRR4302540.1603265/94‑1 (MQ=60)
TCTTTTGGCATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGA > SRR4302540.3272562/1‑94 (MQ=60)
CTTTTGGCATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAA > SRR4302540.3013834/1‑94 (MQ=60)
TTTTGGCATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAA > SRR4302540.9386297/1‑94 (MQ=60)
TTGGCATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAA < SRR4302540.8208170/94‑1 (MQ=60)
TTGGCATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAA < SRR4302540.8208169/94‑1 (MQ=60)
TGGCATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAAC > SRR4302540.5578003/1‑94 (MQ=60)
TGGCATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAAC < SRR4302540.411799/94‑1 (MQ=60)
GGCATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACA < SRR4302540.7888644/94‑1 (MQ=60)
GCATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACAT < SRR4302540.7074840/94‑1 (MQ=60)
GCATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACAT < SRR4302540.4619735/94‑1 (MQ=60)
GCATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACAT < SRR4302540.8913286/94‑1 (MQ=60)
GCATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACAT > SRR4302540.7004920/1‑94 (MQ=60)
CATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATT < SRR4302540.1095484/94‑1 (MQ=60)
CATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATT > SRR4302540.1702309/1‑94 (MQ=60)
CATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATT < SRR4302540.6569091/94‑1 (MQ=60)
ATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTG > SRR4302540.1383906/1‑94 (MQ=60)
ATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTG > SRR4302540.2668950/1‑94 (MQ=60)
ATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTG > SRR4302540.5713274/1‑94 (MQ=60)
TTAACGGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGG < SRR4302540.2805402/94‑1 (MQ=60)
TTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGG > SRR4302540.9301903/1‑94 (MQ=60)
TTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGG < SRR4302540.8484981/94‑1 (MQ=60)
TAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGA < SRR4302540.1614542/94‑1 (MQ=60)
TAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGA > SRR4302540.3532896/1‑94 (MQ=60)
TAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGA > SRR4302540.2376633/1‑94 (MQ=60)
CCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGG > SRR4302540.1701719/1‑94 (MQ=60)
CGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGT < SRR4302540.217326/94‑1 (MQ=60)
GAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTC > SRR4302540.389239/1‑94 (MQ=60)
GAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTC > SRR4302540.6527590/1‑94 (MQ=60)
AGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCT < SRR4302540.2343688/94‑1 (MQ=60)
AGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCT < SRR4302540.6359683/94‑1 (MQ=60)
CAAACGATATTGCACAGTATTTATGGGTAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGAT < SRR4302540.8456182/94‑1 (MQ=60)
CAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGAT < SRR4302540.8501531/94‑1 (MQ=60)
AAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATG > SRR4302540.9222851/1‑94 (MQ=60)
AAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATG > SRR4302540.4104297/1‑94 (MQ=60)
AAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATG > SRR4302540.1335659/1‑94 (MQ=60)
AAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATG > SRR4302540.1335658/1‑94 (MQ=60)
AAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATG > SRR4302540.2084821/1‑94 (MQ=60)
AACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGG < SRR4302540.4759445/94‑1 (MQ=60)
AACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGG < SRR4302540.4326622/94‑1 (MQ=60)
GATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCG < SRR4302540.1305580/94‑1 (MQ=60)
GATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCG > SRR4302540.80533/1‑94 (MQ=60)
GATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCG < SRR4302540.6660247/94‑1 (MQ=60)
ATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGG < SRR4302540.2021952/94‑1 (MQ=60)
ATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGG > SRR4302540.9340129/1‑94 (MQ=60)
TATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGC < SRR4302540.678461/94‑1 (MQ=60)
TGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTC > SRR4302540.3466865/1‑94 (MQ=60)
GCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCA > SRR4302540.2184461/1‑94 (MQ=60)
CAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCA > SRR4302540.5642098/1‑94 (MQ=60)
CAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCA > SRR4302540.5642097/1‑94 (MQ=60)
CAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCA > SRR4302540.4770437/1‑94 (MQ=60)
CAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCA < SRR4302540.915672/94‑1 (MQ=60)
AGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCAC > SRR4302540.10034724/1‑94 (MQ=60)
GTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACC > SRR4302540.7438487/1‑94 (MQ=60)
ATTTATGGGGAAAATCCTGGGGCAGAAGAAAAGGGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACCAT < SRR4302540.7835608/94‑1 (MQ=60)
TTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACCATC > SRR4302540.7330623/1‑94 (MQ=60)
TTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACCATC > SRR4302540.9310003/1‑94 (MQ=60)
TTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACCATC > SRR4302540.5362224/1‑94 (MQ=60)
TTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACCATC > SRR4302540.9475359/1‑94 (MQ=60)
TTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACCATC > SRR4302540.5818334/1‑94 (MQ=60)
TATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACCATCAT < SRR4302540.3211797/94‑1 (MQ=60)
TATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACCATCAT > SRR4302540.8638508/1‑94 (MQ=60)
ATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACCATCATG > SRR4302540.801814/1‑94 (MQ=60)
GGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACCATCATGATT < SRR4302540.2956024/94‑1 (MQ=60)
GGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACCATCATGATT < SRR4302540.1070227/94‑1 (MQ=60)
GGGAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACCATCATGATT < SRR4302540.749509/94‑1 (MQ=60)
GAAAATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACCATCATGATTGC > SRR4302540.5764573/1‑94 (MQ=60)
AATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACCATCATGATTGCGTC > SRR4302540.9612743/1‑94 (MQ=60)
AATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACCATCATGATTGCGTC > SRR4302540.5221161/1‑94 (MQ=60)
ATCCTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACCATCATGATTGCGTCA > SRR4302540.2160435/1‑94 (MQ=60)
gtgcagaAGAAGAGAAGTGGCCCCTACAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACCATCATGATTGCGTCACTG < SRR4302540.6613777/87‑1 (MQ=60)
CTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACCATCATGATTGCGTCACTG > SRR4302540.7068299/1‑94 (MQ=60)
CTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACCATCATGATTGCGTCACTG < SRR4302540.9496707/94‑1 (MQ=60)
CTGCGGCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACCATCATGATTGCGTCACTG < SRR4302540.6613776/94‑1 (MQ=60)
GCAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACCATCATGATTGCGTCACTGATTAT > SRR4302540.3263974/1‑94 (MQ=60)
CAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACCATCATGATTGCGTCACTGATTATC > SRR4302540.6507334/1‑94 (MQ=60)
CAGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACCATCATGATTGCGTCACTGATTATC < SRR4302540.8199664/94‑1 (MQ=60)
CAGAAGAAAAGTGGCCCCTAAAATCAGCGCGGGAAAAGCATTGGAAGGTCTGATGGGCGGCGTCATCACCATCATGATTGCGTCACTGATTATC < SRR4302540.46814/94‑1 (MQ=60)
AGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACCATCATGATTGCGTCACTGATTATCG > SRR4302540.2065853/1‑94 (MQ=60)
AGAAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACCATCATGATTGCGTCACTGATTATCG > SRR4302540.8276303/1‑94 (MQ=60)
AAGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACCATCATGATTGCGTCACTGATTATCGGA < SRR4302540.2502834/94‑1 (MQ=60)
AGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACCATCATGATTGCGTCACTGATTATCGGAC > SRR4302540.935774/1‑94 (MQ=60)
AGAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACCATCATGATTGCGTCACTGATTATCGGAC > SRR4302540.555454/1‑94 (MQ=60)
GAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACCATCATGATTGCGTCACTGATTATCGGACC < SRR4302540.397142/94‑1 (MQ=60)
GAAAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACCATCATGATTGCGTCACTGATTATCGGACC > SRR4302540.4395113/1‑94 (MQ=60)
AAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACCATCATGATTGCGTCACTGATTATCGGACCGT > SRR4302540.5349084/1‑94 (MQ=60)
AAAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACCATCATGATTGCGTCACTGATTATCGGACCGT > SRR4302540.1818050/1‑94 (MQ=60)
AAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACCATCATGATTGCGTCACTGATTATCGGACCGTT < SRR4302540.4074220/94‑1 (MQ=60)
AAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACCATCATGATTGCGTCACTGATTATCGGACCGTT < SRR4302540.9219015/94‑1 (MQ=60)
AAGTGGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACCATCATGATTGCGTCACTGATTATCGGACCGTT < SRR4302540.4435720/94‑1 (MQ=60)
GGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACCATCATGATTGCGTCACTGATTATCGGACCGTTACTG > SRR4302540.2538445/1‑94 (MQ=60)
GGCCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACCATCATGATTGCGTCACTGATTATCGGACCGTTACTG < SRR4302540.6452611/94‑1 (MQ=60)
CCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACCATCATGATTGCGTCACTGATTATCGGACCGTTACTGAC < SRR4302540.4946033/94‑1 (MQ=60)
|
GGCGTTACTGGTGTTATTTCTTTTGGCATTAACCGAGTCAAACGATATTGCACAGTATTTATGGGGAAAATCCTGCGGCAGAAGAAAAGTGGTCCCTAAAGTCAGCCCGGGAAAAACATTGGAAGGTCTGATGGGCGGCGTCATCACCATCATGATTGCGTCACTGATTATCGGACCGTTACTGAC > NC_000913/1476747‑1476932
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
