Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1548 |
369.5 |
20095359 |
96.9% |
19472402 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,535,627 |
A→G |
R417R (CGT→CGC) |
narY ← |
cryptic nitrate reductase 2 beta subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,535,627 | 0 | A | G | 99.5%
| 630.6
/ NA
| 195 | R417R (CGT→CGC) | narY | cryptic nitrate reductase 2 beta subunit |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (100/94); minor base T (0/1); total (100/95) |
| Fisher's exact test for biased strand distribution p-value = 4.87e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 206 total aligned reads displayed.
GAGATAGCGATACATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAACGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATTGGCGAGATATTGCAC > NC_000913/1535537‑1535719
|
gagaTAGCGATACATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCg > 2:809273/1‑93 (MQ=255)
gaTAGCGATACATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCa < 2:5363119/93‑1 (MQ=255)
gaTAGCGATACATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCa > 2:5046990/1‑93 (MQ=255)
tAGCGATACATCTCTTCGCCCTGGGCGACGCTCAGGCCTACTTCGTCGAGGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCCCatt > 2:404908/1‑92 (MQ=255)
tAGCGATACATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCata < 2:8037111/93‑1 (MQ=255)
tAGCGATACATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCata < 2:1203947/93‑1 (MQ=255)
tAGCGATACATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCata < 1:843788/93‑1 (MQ=255)
aaGCGATACCTCTCTTCGACCTGAGCGACGCTGAGGCCTACTGCGTCGATGACACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCata < 1:1476175/92‑1 (MQ=255)
aGCGATACATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCatat < 2:3505424/93‑1 (MQ=255)
aGCGATACATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCatat > 1:2436418/1‑93 (MQ=255)
gCGATACATCTCTTCGACCTGTGCGACGCTCAGGCCTACTTCGTCGATGGCACGATTATCAGTAACGCCTTCCACGGTTTGTGAGCGCAtata < 2:3307126/93‑1 (MQ=255)
gCGATACATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCAtata > 1:4616855/1‑93 (MQ=255)
cGATACATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAg > 1:5333502/1‑93 (MQ=255)
gATACATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGt < 2:2430648/93‑1 (MQ=255)
aTACATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCTACGGTTTGGGAGCGCATATAGTg > 2:5506708/1‑93 (MQ=255)
aTACATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCGACGGTTTGTGAGCGCATATAGTg > 2:5526697/1‑93 (MQ=255)
aTACATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTg > 1:8281664/1‑93 (MQ=255)
tACATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTgg > 1:6152995/1‑93 (MQ=255)
aCATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGgc < 1:3677794/93‑1 (MQ=255)
aTCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGgcgc < 1:9227781/93‑1 (MQ=255)
aTCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGgcgc < 2:5076846/93‑1 (MQ=255)
ctTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCg > 1:4721032/1‑93 (MQ=255)
ttCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGc < 2:521863/93‑1 (MQ=255)
tCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGcc < 2:1509615/93‑1 (MQ=255)
tCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGcc > 1:5995616/1‑93 (MQ=255)
gACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCcat > 2:6058809/1‑93 (MQ=255)
gACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCcat > 1:5025619/1‑93 (MQ=255)
aCCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCcatc > 1:3138305/1‑93 (MQ=255)
aCCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCcatc > 1:8864776/1‑93 (MQ=255)
aCCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCcatc < 1:9492949/93‑1 (MQ=255)
ccTGGGCGACGCTCAGGCCTACTGCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCcatca < 1:7121064/93‑1 (MQ=255)
cTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCcatcat > 2:5819247/1‑93 (MQ=255)
cTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCcatcat > 2:948836/1‑93 (MQ=255)
cTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCcatcat > 2:1919538/1‑93 (MQ=255)
tGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCatcatc > 1:6195422/1‑93 (MQ=255)
gggCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATcc > 1:9564471/1‑93 (MQ=255)
gCGACGCTCAGGCCTACTTCGGCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGt < 1:2995272/93‑1 (MQ=255)
cGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGtt > 1:4504559/1‑93 (MQ=255)
gCTCAGGCCTACTTCCTCGATGGCACGAGTATCAGTAACGCCTTCCACGGGTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAg < 1:4329555/93‑1 (MQ=255)
cTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAgc > 1:64900/1‑93 (MQ=255)
tCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAgcg > 1:8852513/1‑93 (MQ=255)
tCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAgcg > 2:9879065/1‑93 (MQ=255)
cAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAgcgc > 2:2680228/1‑93 (MQ=255)
aGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGcc > 2:822658/1‑93 (MQ=255)
cTACTTCATCCATGGCACGAGTATCAGTAGCGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCa < 2:8551387/93‑1 (MQ=255)
tACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAg < 2:6483847/93‑1 (MQ=255)
aCTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGt > 1:4210702/1‑93 (MQ=255)
cTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCACCCGCAGTa > 2:3891159/1‑93 (MQ=255)
cTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGCTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAgga > 2:7749374/1‑91 (MQ=255)
tcgtcgATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTacc > 1:6855724/1‑93 (MQ=255)
gtcgATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTaccgg < 1:868863/93‑1 (MQ=255)
tcgATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTaccgga > 2:5392368/1‑93 (MQ=255)
cgATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTaccggac < 2:6730617/93‑1 (MQ=255)
gATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTaccggacc < 2:7455368/93‑1 (MQ=255)
gATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTaccggacc < 1:6679850/93‑1 (MQ=255)
aTGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTaccggaccg > 1:350616/1‑93 (MQ=255)
tGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTaccggaccgg < 2:2414903/93‑1 (MQ=255)
gCACGAGTATCAGGAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTa < 2:6222187/93‑1 (MQ=255)
aCGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATc > 1:1100533/1‑93 (MQ=255)
cGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCg > 2:216021/1‑93 (MQ=255)
cGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCg > 1:5662102/1‑93 (MQ=255)
gaatATCAGTAACGCCTTCCACGTTTTGTGAGCTCATATAGTGGCCCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGc < 2:3651372/90‑1 (MQ=255)
gAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGc > 1:4806153/1‑93 (MQ=255)
gAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGc < 1:5152940/93‑1 (MQ=255)
aGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGcc < 1:103322/93‑1 (MQ=255)
aGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGcc > 2:4637075/1‑93 (MQ=255)
aGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGcc < 2:1278541/93‑1 (MQ=255)
tATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCgg < 1:1541761/93‑1 (MQ=255)
gTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTc > 2:31397/1‑93 (MQ=255)
gTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTc > 2:4143539/1‑93 (MQ=255)
tAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCa > 1:4401644/1‑93 (MQ=255)
tAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCa > 2:7046203/1‑93 (MQ=255)
aaCGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCaa < 1:7749608/93‑1 (MQ=255)
aaCGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCaa < 1:7436376/93‑1 (MQ=255)
aCGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAAc < 1:7643670/93‑1 (MQ=255)
cGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACa < 2:741652/93‑1 (MQ=255)
cGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACa < 2:3564765/93‑1 (MQ=255)
cGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACa < 2:374835/93‑1 (MQ=255)
ccTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACata < 1:5527902/93‑1 (MQ=255)
ccTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACata > 1:9839955/1‑93 (MQ=255)
cTTCCCCGTGTTGTGAGCGCATTTAGTGGCCCATCTCCATCATCCGTTTCACCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACatat < 1:2065918/93‑1 (MQ=255)
cTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACatat < 1:5251839/93‑1 (MQ=255)
cTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACatat > 1:2534589/1‑93 (MQ=255)
ttCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATAtt > 2:7274970/1‑93 (MQ=255)
ttCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATAtt > 1:3043523/1‑93 (MQ=255)
tCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATTg < 2:8910778/93‑1 (MQ=255)
tCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATTg > 1:8404307/1‑93 (MQ=255)
tCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATTg > 1:1847065/1‑93 (MQ=255)
cGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATTGGCga < 2:6952834/93‑1 (MQ=255)
ggTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATTGGCgag > 1:6399079/1‑93 (MQ=255)
gTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATTGGCgaga < 1:2777812/93‑1 (MQ=255)
tttGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATTGGCGAGat > 2:9813834/1‑93 (MQ=255)
ttGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATTGGCGAGata > 1:3611721/1‑93 (MQ=255)
ttGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATTGGCGAGata < 2:7970134/93‑1 (MQ=255)
tggtgAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATTGGCGAGata < 1:5686531/91‑1 (MQ=255)
tgtgAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATTGGCGAGatat < 2:3255480/93‑1 (MQ=255)
tgtgAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATTGGCGAGatat < 2:3829966/93‑1 (MQ=255)
gtgAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATTGGCGAGATAtt > 2:144792/1‑93 (MQ=255)
gtgAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATTGGCGAGATAtt < 1:8222643/93‑1 (MQ=255)
gtgAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATTGGCGAGATAtt < 2:4721031/93‑1 (MQ=255)
|
GAGATAGCGATACATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAACGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATTGGCGAGATATTGCAC > NC_000913/1535537‑1535719
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GCGAGATAGCGATACATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAACGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATTGGCGAGATATTGCACC > NC_000913/1535535‑1535720
|
GCGAGATAGCGATACATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGC < SRR4302540.1159924/94‑1 (MQ=60)
CGAGATAGCGATACATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCG > SRR4302540.4508723/1‑94 (MQ=60)
AGATAGCGATACATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCA > SRR4302540.574384/1‑94 (MQ=60)
GATAGCGATACATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCAT < SRR4302540.8534143/94‑1 (MQ=60)
ATAGCGATACATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATA > SRR4302540.7700128/1‑94 (MQ=60)
TAGCGATACATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATAT > SRR4302540.2462659/1‑94 (MQ=60)
TAGCGATACATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATAT < SRR4302540.852734/94‑1 (MQ=60)
TAGCGATACATCTCTTCGACCTGAGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATAT < SRR4302540.1492327/94‑1 (MQ=60)
AAGCGATACCTCTCTTCGACCTGAGCGACGCTGAGGCCTACTGCGTCGATGACACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATAT < SRR4302540.1492326/94‑1 (MQ=60)
AGCGATACATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATA > SRR4302540.4666369/1‑94 (MQ=60)
AGCGATACATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATA > SRR4302540.3555387/1‑94 (MQ=60)
GCGATACATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAG > SRR4302540.5391951/1‑94 (MQ=60)
GATACATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTG > SRR4302540.5691278/1‑94 (MQ=60)
GATACATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTG > SRR4302540.8377854/1‑94 (MQ=60)
ATACATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGG > SRR4302540.6221531/1‑94 (MQ=60)
ACATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCG < SRR4302540.3717999/94‑1 (MQ=60)
CATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGTACTAGTTTCGGTAACGCCTTGCACGGTTTGTGAGGGCATATAGTGGCGC > SRR4302540.4864393/1‑94 (MQ=60)
ATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCA < SRR4302540.9338412/94‑1 (MQ=60)
ATCTCTTCGACCTGCGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCA < SRR4302540.4326368/94‑1 (MQ=60)
TCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCAT < SRR4302540.739456/94‑1 (MQ=60)
TCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGCATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCAC > SRR4302540.2108429/1‑94 (MQ=60)
TCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCCTCG > SRR4302540.6561153/1‑94 (MQ=60)
TCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCG > SRR4302540.7163550/1‑94 (MQ=60)
TCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCG > SRR4302540.4771459/1‑94 (MQ=60)
TTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCC > SRR4302540.8274942/1‑94 (MQ=60)
TTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCC > SRR4302540.6062049/1‑94 (MQ=60)
TCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCA < SRR4302540.4644933/94‑1 (MQ=60)
CGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCAT > SRR4302540.5080017/1‑94 (MQ=60)
GACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATC > SRR4302540.3172533/1‑94 (MQ=60)
GACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATC < SRR4302540.4740945/94‑1 (MQ=60)
GACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATC > SRR4302540.8967354/1‑94 (MQ=60)
ACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCA < SRR4302540.3138225/94‑1 (MQ=60)
ACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCA < SRR4302540.9605468/94‑1 (MQ=60)
CCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCAT < SRR4302540.1300114/94‑1 (MQ=60)
CCTGGGCGACGCTCAGGCCTACTGCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCAT < SRR4302540.7200358/94‑1 (MQ=60)
CTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATC < SRR4302540.8378193/94‑1 (MQ=60)
CTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATC > SRR4302540.6264397/1‑94 (MQ=60)
CTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGGGGCGCATCGCCATCATC > SRR4302540.6588623/1‑94 (MQ=60)
TGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCC > SRR4302540.9677521/1‑94 (MQ=60)
GCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTT > SRR4302540.4553386/1‑94 (MQ=60)
GCGACGCTCAGGCCTACTTCGGCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTT < SRR4302540.3028285/94‑1 (MQ=60)
GACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTC > SRR4302540.1910032/1‑94 (MQ=60)
GCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGC < SRR4302540.4376688/94‑1 (MQ=60)
GCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGC > SRR4302540.65552/1‑94 (MQ=60)
GCTCAGGCCTACTTCCTCGATGGCACGAGTATCAGTAACGCCTTCCACGGGTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGC < SRR4302540.4376687/94‑1 (MQ=60)
CTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCG > SRR4302540.8954923/1‑94 (MQ=60)
CTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCG > SRR4302540.8954922/1‑94 (MQ=60)
CAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCC < SRR4302540.5231078/94‑1 (MQ=60)
CAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCC > SRR4302540.6246661/1‑94 (MQ=60)
CAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCC > SRR4302540.9959868/1‑94 (MQ=60)
TACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGT > SRR4302540.4256551/1‑94 (MQ=60)
CTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTAC < SRR4302540.4796308/94‑1 (MQ=60)
CTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTAC > SRR4302540.4107375/1‑94 (MQ=60)
TTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACC > SRR4302540.9411450/1‑94 (MQ=60)
TTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACC > SRR4302540.6803947/1‑94 (MQ=60)
TTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACC > SRR4302540.6931678/1‑94 (MQ=60)
GTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGA < SRR4302540.8998219/94‑1 (MQ=60)
GTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGA < SRR4302540.878083/94‑1 (MQ=60)
GTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGA > SRR4302540.2613051/1‑94 (MQ=60)
GATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCG < SRR4302540.6753638/94‑1 (MQ=60)
GATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCG < SRR4302540.5360640/94‑1 (MQ=60)
GATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCG > SRR4302540.354204/1‑94 (MQ=60)
CACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATC > SRR4302540.1111869/1‑94 (MQ=60)
ACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCG > SRR4302540.5724449/1‑94 (MQ=60)
ACGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCG > SRR4302540.5099491/1‑94 (MQ=60)
CGAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGC > SRR4302540.4857594/1‑94 (MQ=60)
GAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCC < SRR4302540.9825614/94‑1 (MQ=60)
GAGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCC < SRR4302540.5208855/94‑1 (MQ=60)
AGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCG < SRR4302540.104426/94‑1 (MQ=60)
AGTATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCG < SRR4302540.44141/94‑1 (MQ=60)
GTATCAGTAACGCGTTCCACGGTTTGTGATCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCCCCCGCAGTACCGGACCGGTATCGCCGG < SRR4302540.8331266/94‑1 (MQ=60)
TATCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGC < SRR4302540.1558794/94‑1 (MQ=60)
TCAGTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCAC < SRR4302540.3702043/94‑1 (MQ=60)
GTAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCA > SRR4302540.4449376/1‑94 (MQ=60)
TAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCTGACCGGTATCGGCGGCACTCAA > SRR4302540.540581/1‑94 (MQ=60)
TAACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAA < SRR4302540.6332894/94‑1 (MQ=60)
AACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAAC < SRR4302540.7840102/94‑1 (MQ=60)
AACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAAC < SRR4302540.7519238/94‑1 (MQ=60)
ACGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACA < SRR4302540.7729699/94‑1 (MQ=60)
CGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACTGGTATCGCCGGCACTCAACAT > SRR4302540.1111563/1‑94 (MQ=60)
CGCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACAT < SRR4302540.6666264/94‑1 (MQ=60)
GCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATA > SRR4302540.9955000/1‑94 (MQ=60)
GCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATA > SRR4302540.1851645/1‑94 (MQ=60)
GCCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCCCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATA < SRR4302540.989684/94‑1 (MQ=60)
CCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATAT > SRR4302540.2561923/1‑94 (MQ=60)
CCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATAT > SRR4302540.2561924/1‑94 (MQ=60)
CCTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATAT < SRR4302540.5588784/94‑1 (MQ=60)
cttccccgtgTTGTGAGCGCATTTAGTGGCCCATCTCCATCATCCGTTTCACCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATT < SRR4302540.2088146/84‑1 (MQ=60)
CTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATT > SRR4302540.3076920/1‑94 (MQ=60)
CTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATT > SRR4302540.2925820/1‑94 (MQ=60)
CTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATT > SRR4302540.3225274/1‑94 (MQ=60)
CTTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATT < SRR4302540.5309125/94‑1 (MQ=60)
TTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATTG > SRR4302540.8501858/1‑94 (MQ=60)
TTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATTG < SRR4302540.6042720/94‑1 (MQ=60)
TTCCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATTG > SRR4302540.1867314/1‑94 (MQ=60)
CCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCCCTCAACATATTGGC > SRR4302540.3048876/1‑94 (MQ=60)
CCACGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATTGGC > SRR4302540.8817747/1‑94 (MQ=60)
CGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATTGGCGAG < SRR4302540.8704755/94‑1 (MQ=60)
CGGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATTGGCGAG > SRR4302540.6470315/1‑94 (MQ=60)
GGTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATTGGCGAGA > SRR4302540.4912853/1‑94 (MQ=60)
GTTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATTGGCGAGAT < SRR4302540.2807833/94‑1 (MQ=60)
TTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATTGGCGAGATA < SRR4302540.6211365/94‑1 (MQ=60)
TTTGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATTGGCGAGATA > SRR4302540.3651205/1‑94 (MQ=60)
TGGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATTGGCGAGATAT < SRR4302540.5749129/94‑1 (MQ=60)
TGTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATTGGCGAGATATT < SRR4302540.9664399/94‑1 (MQ=60)
GTGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATTGGCGAGATATTG < SRR4302540.8318226/94‑1 (MQ=60)
TGAGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATTGGCGAGATATTGC > SRR4302540.6670467/1‑94 (MQ=60)
AGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATTGGCGAGATATTGCAC < SRR4302540.3290374/94‑1 (MQ=60)
AGCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATTGGCGAGATATTGCAC < SRR4302540.435463/94‑1 (MQ=60)
GCGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATTGGCGAGATATTGCACC > SRR4302540.4512134/1‑94 (MQ=60)
ACGCATATAGTGGCCCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATTGGCGAGATATTGCACC < SRR4302540.7806222/94‑1 (MQ=60)
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GCGAGATAGCGATACATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAACGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATTGGCGAGATATTGCACC > NC_000913/1535535‑1535720
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
