Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1548 |
369.5 |
20095359 |
96.9% |
19472402 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,689,391 |
G→A |
intergenic (+7/+219) |
ydgA → / ← uidC |
hypothetical protein/membrane‑associated protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,689,391 | 0 | G | A | 99.6%
| 944.1
/ NA
| 264 | intergenic (+7/+219) | ydgA/uidC | hypothetical protein/membrane‑associated protein |
| Reads supporting (aligned to +/- strand): ref base G (0/1); new base A (120/143); total (120/144) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 265 total aligned reads displayed.
AAAATGTCGTTAGAAGATTTTGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACC > NC_000913/1689301‑1689478
|
aaaaTGTCGTTAGAAGATTTTGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGAcc > 2:1017004/1‑93 (MQ=255)
aaaTGTCGTTAGAAGATTTTGTTGGCATGTTTGCGATGCCAGCTCTTAACGATCCGGCCGTACCGGCAATTCCGCAGCAGTAATTCACGACCa > 1:755728/1‑93 (MQ=255)
aaTGTCGTTAGAAGATTTTGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCaa < 1:138956/93‑1 (MQ=255)
tGTCGTTAGAAGATTTTGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCaaaa < 1:8764780/93‑1 (MQ=255)
gTCGTTAGAAGATTTTGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAAc < 2:9726099/93‑1 (MQ=255)
gTTAGAAGATTTTGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGcc > 2:7177837/1‑93 (MQ=255)
gTTAGAAGATTTTGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGcc < 2:5575660/93‑1 (MQ=255)
ttAGAAGATTTTGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCg > 1:5443922/1‑93 (MQ=255)
ttAGAAGATTTTGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCg < 1:4641139/93‑1 (MQ=255)
tAGAAGATTTTGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCgg > 1:9081293/1‑93 (MQ=255)
agaagaTTTTGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGga > 2:9858905/1‑93 (MQ=255)
agaagaTTTTGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGga > 2:8589326/1‑93 (MQ=255)
agaagaTTTTGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGga > 2:5163150/1‑93 (MQ=255)
gaagaTTTTGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGgag > 2:6415479/1‑93 (MQ=255)
aagaTTTTGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGgaga < 1:6571962/93‑1 (MQ=255)
aagaTTTTGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGgaga < 1:7779151/93‑1 (MQ=255)
aTTTTGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAAtt < 2:3059174/93‑1 (MQ=255)
aTTTTGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAAtt < 2:9147375/93‑1 (MQ=255)
ttttGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAAttt > 1:1535543/1‑93 (MQ=255)
gttgGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCAc > 1:1718417/1‑93 (MQ=255)
tgGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTc < 2:7940706/93‑1 (MQ=255)
ggCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTcc < 1:5184307/93‑1 (MQ=255)
ggCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTcc < 1:528541/93‑1 (MQ=255)
ggCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTcc < 2:9615995/93‑1 (MQ=255)
ggCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTcc > 1:8245409/1‑93 (MQ=255)
cATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCgg < 1:8780105/93‑1 (MQ=255)
aTGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGc < 1:953970/93‑1 (MQ=255)
aTGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGc > 1:4957172/1‑93 (MQ=255)
tGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCg > 2:1673788/1‑93 (MQ=255)
tGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCg > 2:7428297/1‑93 (MQ=255)
gTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGt > 1:950018/1‑93 (MQ=255)
gTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGAACAAAACGCCGGAGAATTTTCACTCCGGCGt < 1:2848532/93‑1 (MQ=255)
tttGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGtt > 2:3625731/1‑93 (MQ=255)
tttGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGtt > 2:7042553/1‑93 (MQ=255)
gATGCCAGCTCTTACCGTTCCGGCTGTGCCGGCAATTCCGCAGCAGTAATCCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCAt < 1:4223891/93‑1 (MQ=255)
gATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCAt < 1:7260524/93‑1 (MQ=255)
aTGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATc > 2:3740559/1‑93 (MQ=255)
aTGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATc > 1:3525458/1‑93 (MQ=255)
tGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGAAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCt > 2:8442852/1‑93 (MQ=255)
tccAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTg < 1:241989/92‑1 (MQ=255)
ccAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGa < 1:6530358/93‑1 (MQ=255)
aGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa < 1:3216169/93‑1 (MQ=255)
gCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaaa > 1:3634548/1‑93 (MQ=255)
tctTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaaca < 2:7823479/93‑1 (MQ=255)
tctTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaaca < 2:2614842/93‑1 (MQ=255)
ctTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaacca > 2:1080361/1‑91 (MQ=255)
ctTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaacaa < 1:494366/93‑1 (MQ=255)
ttAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaacaaa > 1:9699668/1‑93 (MQ=255)
aaCGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAAcc < 2:6542879/93‑1 (MQ=255)
aaCGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAAcc > 2:8093304/1‑93 (MQ=255)
aCGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCa < 1:8585674/93‑1 (MQ=255)
aCGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCa < 1:273335/93‑1 (MQ=255)
gTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCaga < 1:9032256/93‑1 (MQ=255)
ttCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCAGTCCGGCGTTTTCATCTGAAAACAAACCagag < 2:5304749/93‑1 (MQ=255)
ttCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCagag > 2:3995320/1‑93 (MQ=255)
ttCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCagag > 1:9238282/1‑93 (MQ=255)
tCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATGTGAAAACAAACCAgaga > 1:4192325/1‑93 (MQ=255)
tCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAgaga > 2:2041874/1‑93 (MQ=255)
cGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCGCTCCGGCGTTTTCATCTGAAAACAAACCAGAGAtt < 1:7071981/93‑1 (MQ=255)
cGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGAtt < 2:4200115/93‑1 (MQ=255)
cGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGAtt < 1:9438971/93‑1 (MQ=255)
cGGCTGTACCGACAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGAtt < 1:3901491/93‑1 (MQ=255)
cTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGcc < 1:33955/93‑1 (MQ=255)
tGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCt > 1:8355961/1‑93 (MQ=255)
tGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCt < 2:5966173/93‑1 (MQ=255)
tGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCt > 1:4318978/1‑93 (MQ=255)
gTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTg > 1:1276965/1‑93 (MQ=255)
gTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTg > 1:195695/1‑93 (MQ=255)
tACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGa < 2:2141200/93‑1 (MQ=255)
tACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGa < 2:4630741/93‑1 (MQ=255)
tACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGa < 2:4955513/93‑1 (MQ=255)
aCCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGAt < 1:7368301/93‑1 (MQ=255)
aCCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGAt < 2:2712202/93‑1 (MQ=255)
ccGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATg < 1:3481442/93‑1 (MQ=255)
cGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc > 1:2138040/1‑93 (MQ=255)
cGGCAATGCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc < 1:6301951/93‑1 (MQ=255)
gCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgcgc > 2:9019011/1‑93 (MQ=255)
gCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgcgc < 2:6883024/93‑1 (MQ=255)
gCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgcgc < 2:6535659/93‑1 (MQ=255)
cAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCt < 1:8555623/93‑1 (MQ=255)
cAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCt > 2:8771807/1‑93 (MQ=255)
aaTTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTa < 2:1548468/93‑1 (MQ=255)
aaTTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTa < 2:7729102/93‑1 (MQ=255)
aaTTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTa < 2:6111266/93‑1 (MQ=255)
tCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGc > 2:5923572/1‑93 (MQ=255)
ccGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCt > 1:5698634/1‑93 (MQ=255)
cGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCtt < 1:3022465/93‑1 (MQ=255)
cagcagTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTAt < 1:996767/93‑1 (MQ=255)
agcagTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATc < 1:988132/93‑1 (MQ=255)
agcagTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATc > 2:2320367/1‑93 (MQ=255)
agcagTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATc < 1:8127933/93‑1 (MQ=255)
agcagTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATc > 1:4744377/1‑93 (MQ=255)
gcagTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCa < 2:7705412/93‑1 (MQ=255)
gcagTAATTCACGACCAAAACGCCGGAGAATTTTCACTACGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCa < 2:8344593/93‑1 (MQ=255)
cagTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAg < 1:8907046/93‑1 (MQ=255)
tAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGcc < 1:6107513/93‑1 (MQ=255)
tAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGcc > 1:9140246/1‑93 (MQ=255)
aaTTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCt > 2:2591542/1‑93 (MQ=255)
aaTTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCt > 1:1224268/1‑93 (MQ=255)
aaTTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCt > 2:4815891/1‑93 (MQ=255)
|
AAAATGTCGTTAGAAGATTTTGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACC > NC_000913/1689301‑1689478
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CAGAAAATGTCGTTAGAAGATTTTGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTC > NC_000913/1689298‑1689483
|
CAGAAAATGTCGTTAGAAGATTTTGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGA < SRR4302540.8964345/94‑1 (MQ=60)
AGAAAATGTCGTTAGAAGATTTTGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGAC > SRR4302540.8937479/1‑94 (MQ=60)
AGAAAATGTCGTTAGAAGATTTTGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGAC < SRR4302540.5736908/94‑1 (MQ=60)
GAAAATGTCGTTAGAAGATTTTGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACC > SRR4302540.3244580/1‑94 (MQ=60)
AAAATGTCGTTAGAAGATTTTGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCA > SRR4302540.3531680/1‑94 (MQ=60)
AAAATGTCGTTAGAAGATTTTGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCA > SRR4302540.3726914/1‑94 (MQ=60)
AAAATGTCGTTAGAAGATTTTGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCA < SRR4302540.6635864/94‑1 (MQ=60)
AAAATGTCGTTAGAAGATTTTGTTGGCATGTTTGCGATGCCAGCTCTTAACGATCCGGCCGTACCGGCAATTCCGCAGCAGTAATTCACGACCA > SRR4302540.763784/1‑94 (MQ=60)
AATGTCGTTAGAAGATTTTGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAA < SRR4302540.140402/94‑1 (MQ=60)
TGTCGTTAGAAGATTTTGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAAC < SRR4302540.8866386/94‑1 (MQ=60)
TGTCGTTAGAAGATTTTGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAAC < SRR4302540.8341428/94‑1 (MQ=60)
TGTCGTTAGAAGATTTTGTGGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAAC < SRR4302540.8866387/94‑1 (MQ=60)
GTCGTTAGAAGATTTTGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCACAACG > SRR4302540.9235834/1‑94 (MQ=60)
GTCGTTAGAAGATTTTGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACG > SRR4302540.7318875/1‑94 (MQ=60)
GTCGTTAGAAGATTTTGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACG < SRR4302540.2905473/94‑1 (MQ=60)
GTTAGAAGATTTTGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCG > SRR4302540.5503825/1‑94 (MQ=60)
TTAGAAGATTTTGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGG > SRR4302540.9190392/1‑94 (MQ=60)
TTAGAAGATTTTGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGG < SRR4302540.130904/94‑1 (MQ=60)
TTAGAAGATTTTGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGG < SRR4302540.4690831/94‑1 (MQ=60)
TTAGAAGATTTTGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGG < SRR4302540.5094485/94‑1 (MQ=60)
TAGAAGATTTTGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGA < SRR4302540.406869/94‑1 (MQ=60)
TAGAAGATTTTGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGA > SRR4302540.2844403/1‑94 (MQ=60)
TAGAAGATTTTGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAAAGCCGGA > SRR4302540.6282370/1‑94 (MQ=60)
AGAAGATTTTGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAG < SRR4302540.9596537/94‑1 (MQ=60)
AGAAGATTTTGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAG > SRR4302540.1754175/1‑94 (MQ=60)
AGAAGATTTTGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAG < SRR4302540.6381092/94‑1 (MQ=60)
AAGATTTTGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAA < SRR4302540.5336270/94‑1 (MQ=60)
AAGATTTTGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAA < SRR4302540.7870084/94‑1 (MQ=60)
AAGATTTTGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAA < SRR4302540.6644775/94‑1 (MQ=60)
ATTTTGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTT > SRR4302540.8750934/1‑94 (MQ=60)
ATTTTGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTT > SRR4302540.1552531/1‑94 (MQ=60)
TTTTGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTT > SRR4302540.3826697/1‑94 (MQ=60)
TTTGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTC > SRR4302540.9990203/1‑94 (MQ=60)
TTGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCA < SRR4302540.9715413/94‑1 (MQ=60)
TTGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCA < SRR4302540.9026126/94‑1 (MQ=60)
TTGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCA < SRR4302540.9026125/94‑1 (MQ=60)
TTGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCA > SRR4302540.8990450/1‑94 (MQ=60)
TTGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCA > SRR4302540.9616463/1‑94 (MQ=60)
TTGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCA > SRR4302540.6167800/1‑94 (MQ=60)
TGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCAC > SRR4302540.1736970/1‑94 (MQ=60)
TGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCAC < SRR4302540.1365287/94‑1 (MQ=60)
TGTTGCGATGATTGCGATGCCAGCTCGTGACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAAGTTTCAC < SRR4302540.3519180/94‑1 (MQ=60)
GTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACT > SRR4302540.7300532/1‑94 (MQ=60)
GTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACT < SRR4302540.4286397/94‑1 (MQ=60)
TGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCC > SRR4302540.8341245/1‑94 (MQ=60)
TGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCC > SRR4302540.8341243/1‑94 (MQ=60)
GGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCG < SRR4302540.5240745/94‑1 (MQ=60)
GGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCG < SRR4302540.534257/94‑1 (MQ=60)
GGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCG < SRR4302540.8516739/94‑1 (MQ=60)
CATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGC > SRR4302540.5010744/1‑94 (MQ=60)
CATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGC < SRR4302540.8881766/94‑1 (MQ=60)
ATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCG < SRR4302540.963868/94‑1 (MQ=60)
ATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCG < SRR4302540.7390677/94‑1 (MQ=60)
TGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGT > SRR4302540.959898/1‑94 (MQ=60)
GTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGAACAAAACGCCGGAGAATTTTCACTCCGGCGTT < SRR4302540.2879381/94‑1 (MQ=60)
TTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTT < SRR4302540.751191/94‑1 (MQ=60)
TTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTT > SRR4302540.9425346/1‑94 (MQ=60)
TGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTC > SRR4302540.3598855/1‑94 (MQ=60)
TGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTC < SRR4302540.6408089/94‑1 (MQ=60)
ggagccaagttctgAACGTTCCGGTTGTACGGGCAATTCCGCAGCAGTAATTCCCGACCAAAACGCGGGA‑AAATTTCACTCCGGCGTTTTCATC < SRR4302540.4269866/80‑1 (MQ=45)
CGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCAT > SRR4302540.9311056/1‑94 (MQ=60)
CGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCAT > SRR4302540.3232213/1‑94 (MQ=60)
CGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCAT > SRR4302540.2906806/1‑94 (MQ=60)
GATGCCAGCTCTTACCGTTCCGGCTGTGCCGGCAATTCCGCAGCAGTAATCCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATC < SRR4302540.4269868/94‑1 (MQ=60)
GATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATC > SRR4302540.3563897/1‑94 (MQ=60)
GATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATC < SRR4302540.7341537/94‑1 (MQ=60)
GATGCCAGCTCTTAACGTGCCGGCTGTACCGGCAATTCCGCAGCACTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATC < SRR4302540.4269865/94‑1 (MQ=60)
TGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTG > SRR4302540.4771431/1‑94 (MQ=60)
TCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGA < SRR4302540.244327/94‑1 (MQ=60)
GCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGA < SRR4302540.1720664/94‑1 (MQ=60)
CCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAA < SRR4302540.6602862/94‑1 (MQ=60)
AGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAA < SRR4302540.3251095/94‑1 (MQ=60)
AGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAA > SRR4302540.3674335/1‑94 (MQ=60)
TCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAA > SRR4302540.8119365/1‑94 (MQ=60)
TCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGACGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAA > SRR4302540.7621610/1‑94 (MQ=60)
CTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAA < SRR4302540.10070073/94‑1 (MQ=60)
CTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAA > SRR4302540.9813707/1‑94 (MQ=60)
CTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAA < SRR4302540.499667/94‑1 (MQ=60)
CTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAA < SRR4302540.499668/94‑1 (MQ=60)
CTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAA > SRR4302540.9272276/1‑94 (MQ=60)
TTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAACCAAAC < SRR4302540.4915102/94‑1 (MQ=60)
TAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACC > SRR4302540.4539683/1‑94 (MQ=60)
AACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCA < SRR4302540.9163710/94‑1 (MQ=60)
ACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAG < SRR4302540.8685481/94‑1 (MQ=60)
ACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAG < SRR4302540.276021/94‑1 (MQ=60)
GTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAG < SRR4302540.3296810/94‑1 (MQ=60)
GTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAG < SRR4302540.6633667/94‑1 (MQ=60)
GTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAG < SRR4302540.9140648/94‑1 (MQ=60)
GTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAG > SRR4302540.9348953/1‑94 (MQ=60)
TTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATGTGAAAACAAACCAGAGA > SRR4302540.4237925/1‑94 (MQ=60)
TTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGA < SRR4302540.8678873/94‑1 (MQ=60)
TCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGAT < SRR4302540.3505003/94‑1 (MQ=60)
CCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATT < SRR4302540.5952274/94‑1 (MQ=60)
CCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATT < SRR4302540.7826450/94‑1 (MQ=60)
CGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCGCTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTG < SRR4302540.7150652/94‑1 (MQ=60)
CGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTG > SRR4302540.2371445/1‑94 (MQ=60)
CGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTG < SRR4302540.9551061/94‑1 (MQ=60)
CGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGATTTCATCTGAAAACAAACCAGAGATTG > SRR4302540.9219342/1‑94 (MQ=60)
CGGCTGTACCGACAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTG < SRR4302540.3943817/94‑1 (MQ=60)
GGCTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGC > SRR4302540.4176464/1‑94 (MQ=60)
GCTGTACCGGCAATTCCGCAGCAGTAATTCAAGACCAAAACGCCGGAGAATTTTCACTCCGGCGGTTTCATCTGAAAACAAACCAGAGATTGCC > SRR4302540.2615627/1‑94 (MQ=60)
CTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCT < SRR4302540.34315/94‑1 (MQ=60)
CTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCT > SRR4302540.8452939/1‑94 (MQ=60)
CTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCT > SRR4302540.7854965/1‑94 (MQ=60)
CTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCT > SRR4302540.4365995/1‑94 (MQ=60)
CTGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCT < SRR4302540.4901531/94‑1 (MQ=60)
TGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTG > SRR4302540.197638/1‑94 (MQ=60)
TGTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTG > SRR4302540.1290128/1‑94 (MQ=60)
GTACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGA < SRR4302540.10020571/94‑1 (MQ=60)
GTACCGCCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGA > SRR4302540.9563085/1‑94 (MQ=60)
ACCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATG < SRR4302540.7450443/94‑1 (MQ=60)
CCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGC < SRR4302540.3519347/94‑1 (MQ=60)
CCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGC < SRR4302540.3519355/94‑1 (MQ=60)
CCGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGC > SRR4302540.2161007/1‑94 (MQ=60)
CGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCG > SRR4302540.9882487/1‑94 (MQ=60)
CGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCG > SRR4302540.5074556/1‑94 (MQ=60)
CGGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCG < SRR4302540.2509162/94‑1 (MQ=60)
CGGCAATGCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCG < SRR4302540.6372132/94‑1 (MQ=60)
GGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGC > SRR4302540.1948456/1‑94 (MQ=60)
GGCAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGC > SRR4302540.8061968/1‑94 (MQ=60)
CAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTA > SRR4302540.9631332/1‑94 (MQ=60)
CAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTA < SRR4302540.8654711/94‑1 (MQ=60)
CAATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTA < SRR4302540.8654997/94‑1 (MQ=60)
ATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACG < SRR4302540.4388630/94‑1 (MQ=60)
ATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACG < SRR4302540.5651534/94‑1 (MQ=60)
ATTCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACG < SRR4302540.5318042/94‑1 (MQ=60)
TCCGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCT > SRR4302540.5761382/1‑94 (MQ=60)
CGCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTA < SRR4302540.3055680/94‑1 (MQ=60)
GCAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTAT < SRR4302540.5467182/94‑1 (MQ=60)
CAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATC < SRR4302540.1006910/94‑1 (MQ=60)
CAGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATC > SRR4302540.4795007/1‑94 (MQ=60)
AGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCG < SRR4302540.998225/94‑1 (MQ=60)
AGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCA < SRR4302540.1531400/94‑1 (MQ=60)
AGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCA < SRR4302540.8222274/94‑1 (MQ=60)
AGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCA < SRR4302540.8810791/94‑1 (MQ=60)
AGCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCA < SRR4302540.8913/94‑1 (MQ=60)
GCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAG < SRR4302540.1999977/94‑1 (MQ=60)
GCAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAG < SRR4302540.6854074/94‑1 (MQ=60)
CAGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGG < SRR4302540.9010183/94‑1 (MQ=60)
AGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGC > SRR4302540.244124/1‑94 (MQ=60)
AGTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTAATCTGAAAACAAACCAGAGATTGACTGATGCGCTACGCTTATCAGGC > SRR4302540.4333834/1‑94 (MQ=60)
GTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCC < SRR4302540.7446810/94‑1 (MQ=60)
GTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCC > SRR4302540.8295799/1‑94 (MQ=60)
GTAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCC > SRR4302540.9250057/1‑94 (MQ=60)
TAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCT > SRR4302540.1236788/1‑94 (MQ=60)
TAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCT < SRR4302540.6175533/94‑1 (MQ=60)
TAATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCT < SRR4302540.1713304/94‑1 (MQ=60)
AATTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTA < SRR4302540.125724/94‑1 (MQ=60)
TTCACGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACC > SRR4302540.5731284/1‑94 (MQ=60)
CGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTT < SRR4302540.6687396/94‑1 (MQ=60)
CGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTGTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTT < SRR4302540.6687395/94‑1 (MQ=60)
GACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTC > SRR4302540.3454206/1‑94 (MQ=60)
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CAGAAAATGTCGTTAGAAGATTTTGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTC > NC_000913/1689298‑1689483
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
