Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,698,875	A→G	V499V (GTA→GTG)	malX →	MalX

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,698,875	0	A	G	100.0%	921.1 / NA	281	V499V (GTA→GTG)	malX	MalX
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (160/121); total (160/121)

Only 100 of 301 total aligned reads displayed.

TAACTGCATTACCCGTCTGCGTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTACAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCTGATGCATACTGTCCAG  >  NC_000913/1698785‑1698965

tAACTGCATTACCCGTCTGCGTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCa                                                                                          >  2:1116063/1‑93 (MQ=255)

tAACTGCATTACCCGTCTGCGTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCa                                                                                          >  2:2218761/1‑93 (MQ=255)

tAACTGCATTACCCGTCTGCGTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCa                                                                                          >  2:9148095/1‑93 (MQ=255)

  aCTGCATTACCCGTCTGCGTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAAc                                                                                        >  2:6635007/1‑93 (MQ=255)

    tGCATTACCCGTCTGCGTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGCCAATCGGGCAATTGGCGTAGTGCAACta                                                                                      >  2:7946695/1‑92 (MQ=255)

     gCATTACCCGTCTGCGTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTa                                                                                     >  1:6093115/1‑93 (MQ=255)

      cATTACCCGTCTGCGTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTaa                                                                                    <  2:8206245/93‑1 (MQ=255)

        ttACCCGTCTGCGTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATc                                                                                  <  1:6360457/93‑1 (MQ=255)

           cccGTCTGCGTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAAc                                                                               <  2:1329102/93‑1 (MQ=255)

              gTCTGCGTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATa                                                                            <  2:1435095/93‑1 (MQ=255)

                cTGGGTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAAc                                                                          <  2:7773613/93‑1 (MQ=255)

                cTGCGTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAAc                                                                          <  1:227547/93‑1 (MQ=255)

                cTGCGTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAAc                                                                          <  2:3236995/93‑1 (MQ=255)

                cTGCGTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAAc                                                                          >  1:9033833/1‑93 (MQ=255)

                cTGCGTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAAc                                                                          >  1:4198965/1‑93 (MQ=255)

                 tGCGTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAAcc                                                                         <  2:6152992/93‑1 (MQ=255)

                 tGCGTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAAcc                                                                         <  1:7640719/93‑1 (MQ=255)

                  gCGTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCt                                                                        <  2:4922628/93‑1 (MQ=255)

                  gCGTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCt                                                                        <  2:8360913/93‑1 (MQ=255)

                  gCGTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCt                                                                        >  1:1571835/1‑93 (MQ=255)

                   gctttGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTg                                                                       <  2:2073967/91‑1 (MQ=255)

                   cGTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTg                                                                       <  1:3356628/93‑1 (MQ=255)

                   cGTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTg                                                                       >  1:9768316/1‑93 (MQ=255)

                    gTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGc                                                                      >  2:8907529/1‑93 (MQ=255)

                    gTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGc                                                                      >  2:9614573/1‑93 (MQ=255)

                        gTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGgt                                                                  <  2:8784458/93‑1 (MQ=255)

                         tCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATCACCTGCAGgtt                                                                 >  1:7447776/1‑93 (MQ=255)

                         tCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGgtt                                                                 <  1:2499551/93‑1 (MQ=255)

                           tgtgAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGgttgt                                                               <  2:2579601/93‑1 (MQ=255)

                            gtgAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGgttgtt                                                              <  2:1575148/93‑1 (MQ=255)

                            gtgAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGgttgtt                                                              <  1:712875/93‑1 (MQ=255)

                            gtgAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGgttgtt                                                              >  2:1938685/1‑93 (MQ=255)

                             tgAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTa                                                             >  1:6502037/1‑93 (MQ=255)

                             tgAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTa                                                             <  2:9039754/93‑1 (MQ=255)

                             tgAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTa                                                             >  1:1061693/1‑93 (MQ=255)

                             tgAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTa                                                             <  2:4165201/93‑1 (MQ=255)

                             tgAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTa                                                             <  2:5629285/93‑1 (MQ=255)

                              gAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTAt                                                            <  1:1243697/93‑1 (MQ=255)

                               aaaGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATc                                                           >  2:4413207/1‑93 (MQ=255)

                               aaaGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATc                                                           <  2:8014306/93‑1 (MQ=255)

                                 aGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCACCTTAATCAACATAACCTGCAGGTTGTTATCgg                                                         <  2:8632976/93‑1 (MQ=255)

                                   agatGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGc                                                       <  2:175407/91‑1 (MQ=255)

                                    tatGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGcc                                                      >  1:4434759/1‑93 (MQ=255)

                                    tatGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGcc                                                      >  1:9618290/1‑93 (MQ=255)

                                     atGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCca                                                     >  1:9327081/1‑93 (MQ=255)

                                      tGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCcac                                                    <  1:8803440/93‑1 (MQ=255)

                                       gTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCcaca                                                   >  2:5136447/1‑93 (MQ=255)

                                             tGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTtca                                             <  1:5501961/93‑1 (MQ=255)

                                             tGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTtca                                             >  1:8368580/1‑93 (MQ=255)

                                               ttAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTtcagt                                           <  1:3744050/93‑1 (MQ=255)

                                               ttAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTtcagc                                           >  2:9191938/1‑92 (MQ=255)

                                                tAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTtcagtc                                          >  1:8577175/1‑93 (MQ=255)

                                                 aaTGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTtcagtca                                         >  2:6877495/1‑93 (MQ=255)

                                                 aaTGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTtcagtca                                         >  2:4593151/1‑93 (MQ=255)

                                                  aTGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTtcagtcag                                        <  2:4644056/93‑1 (MQ=255)

                                                   tgtgCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTcagtcagt                                       >  2:7073871/1‑93 (MQ=255)

                                                    gtgCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTa                                      >  2:3918198/1‑93 (MQ=255)

                                                     tgCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTaa                                     >  1:4822097/1‑93 (MQ=255)

                                                       cAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTaaaa                                   <  1:9977733/93‑1 (MQ=255)

                                                         ggCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGa                                 >  1:6751437/1‑93 (MQ=255)

                                                         ggCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGa                                 <  1:4282742/93‑1 (MQ=255)

                                                          gCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGAt                                <  1:8248688/93‑1 (MQ=255)

                                                           cACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGAta                               >  1:3061933/1‑92 (MQ=255)

                                                             cTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGaa                             >  1:8104680/1‑93 (MQ=255)

                                                              tGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCcaca                                                   >  1:2061435/1‑70 (MQ=255)

                                                              tGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGaaa                            <  2:1867456/93‑1 (MQ=255)

                                                              tGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGaaa                            <  2:2392967/93‑1 (MQ=255)

                                                               gAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGaaag                           >  1:2721077/1‑92 (MQ=255)

                                                               gAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAAt                           <  2:7566468/93‑1 (MQ=255)

                                                               gAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAAt                           >  2:7271878/1‑93 (MQ=255)

                                                                 aGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATgg                         >  2:9376772/1‑93 (MQ=255)

                                                                  ggACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGc                        <  1:188700/93‑1 (MQ=255)

                                                                  ggACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGc                        >  2:7376941/1‑93 (MQ=255)

                                                                  ggACAATCGGGCAATCGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGTTGAAATGGc                        <  2:9749751/93‑1 (MQ=255)

                                                                      aaTCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGt                    >  1:9944345/1‑93 (MQ=255)

                                                                       aTCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTc                   >  2:9524926/1‑93 (MQ=255)

                                                                          gggCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCTGa                >  1:1795809/1‑93 (MQ=255)

                                                                          gggCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCTGa                <  2:3133592/93‑1 (MQ=255)

                                                                          gggCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCTGa                >  2:5791799/1‑93 (MQ=255)

                                                                          cggCAATTGGCGTAGGGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCTGa                <  1:4976136/92‑1 (MQ=255)

                                                                           ggCAATTGGCGTAGTACAACTTAATCAACATAACGTGCAGGTTGCTATCGGTCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCTGAt               <  1:4037333/93‑1 (MQ=255)

                                                                            gCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCTGATg              >  1:1638010/1‑93 (MQ=255)

                                                                             cAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCTGATGc             >  2:6031696/1‑93 (MQ=255)

                                                                              aaTTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCTGATGCa            <  1:3199857/93‑1 (MQ=255)

                                                                              aaTTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCTGATGCa            >  2:5202696/1‑93 (MQ=255)

                                                                                ttGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCTGATGCATa          <  1:3911579/93‑1 (MQ=255)

                                                                                ttGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCTGATGCATa          <  1:7698372/93‑1 (MQ=255)

                                                                                ttGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCTGATGCATa          >  1:4482540/1‑93 (MQ=255)

                                                                                 tGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCTGATGCATAc         <  1:6624033/93‑1 (MQ=255)

                                                                                 tGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCTGATGCATAc         <  1:7007776/93‑1 (MQ=255)

                                                                                  ggCGTAGTGCAACTTAATCAACATAACCTGCAGGTTTTTATCGTGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCTGATGGATACt        >  1:3577350/1‑93 (MQ=255)

                                                                                  ggCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCTGATGCATACt        >  1:5363818/1‑93 (MQ=255)

                                                                                  ggCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGGAAAAGATGAAATGGCCGGTCTGATGCATACt        >  1:1745058/1‑93 (MQ=255)

                                                                                   gCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCTGATGCATACTg       >  1:5082471/1‑93 (MQ=255)

                                                                                    cGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCTGATGCATACTGt      >  1:7497196/1‑93 (MQ=255)

                                                                                    cGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCTGATGCATACTGt      >  2:1172091/1‑93 (MQ=255)

                                                                                      tagtgCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCTGATGCATACTGTcc    >  2:7731673/1‑93 (MQ=255)

                                                                                       agtgCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCTGATGCATACTGTCCa   <  2:8404858/93‑1 (MQ=255)

                                                                                       agtgCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCTGATGCATACTGTCCa   <  1:2759083/93‑1 (MQ=255)

                                                                                       agtgCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATAAAATGGCCGGTCTGATGCATACTGTCCa   <  1:5697285/93‑1 (MQ=255)

TAACTGCATTACCCGTCTGCGTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTACAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCTGATGCATACTGTCCAG  >  NC_000913/1698785‑1698965

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGATAACTGCATTACCCGTCTGCGTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTACAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCTGATGCATACTGTCCAGGCA  >  NC_000913/1698782‑1698968

CGATAACTGCATTACCCGTCTGCGTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTG                                                                                               <  SRR4302540.4654901/94‑1 (MQ=60)

 GATAACTGCATTACCCGTCTGCGTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGC                                                                                              <  SRR4302540.4405639/94‑1 (MQ=60)

   TAACTGCATTACCCGTCTGCGTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAA                                                                                            <  SRR4302540.8368422/94‑1 (MQ=60)

    AACTGCATTACCCGTCTGCGTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAAC                                                                                           <  SRR4302540.2542834/94‑1 (MQ=60)

    AACTGCATTACCCGTCTGCGTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAAC                                                                                           >  SRR4302540.6350026/1‑94 (MQ=60)

     ACTGCATTACCCGTCTGCGTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACT                                                                                          <  SRR4302540.2693428/94‑1 (MQ=60)

       TGCATTACCCGTCTGCGTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTA                                                                                        >  SRR4302540.6160934/1‑94 (MQ=60)

       TGCATTACCCGTCTGCGTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGAAACTTA                                                                                        >  SRR4302540.3246948/1‑94 (MQ=60)

        GCATTACCCGTCTGCGTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAA                                                                                       >  SRR4302540.1261584/1‑94 (MQ=60)

         CATTACCCGTCTGCGTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAAT                                                                                      >  SRR4302540.4954526/1‑94 (MQ=60)

          ATTACCCGTCTGCGTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATC                                                                                     >  SRR4302540.827125/1‑94 (MQ=60)

           TTACCCGTCTGCGTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCA                                                                                    <  SRR4302540.6431284/94‑1 (MQ=60)

             TCCCGTCTGCGTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAAC                                                                                  <  SRR4302540.8826578/94‑1 (MQ=60)

             TCCCGTCTGCGTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAAC                                                                                  <  SRR4302540.8231854/94‑1 (MQ=60)

             TCCCGTCTGCGTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAAC                                                                                  <  SRR4302540.3161218/94‑1 (MQ=60)

             ACCCGTCTGCGTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAAC                                                                                  >  SRR4302540.9713936/1‑94 (MQ=60)

              CCCGTCTGCGTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACA                                                                                 <  SRR4302540.4416397/94‑1 (MQ=60)

               CCGTCTGCGTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACAT                                                                                >  SRR4302540.2863612/1‑94 (MQ=60)

                CGTCTGCGTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATA                                                                               <  SRR4302540.3207680/94‑1 (MQ=60)

                 GTCTGCGTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAA                                                                              <  SRR4302540.5643383/94‑1 (MQ=60)

                 GTCTGCGTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAA                                                                              >  SRR4302540.2810085/1‑94 (MQ=60)

                 GTCTGCGTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAA                                                                              >  SRR4302540.8547382/1‑94 (MQ=60)

                 GTCTGCGTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAA                                                                              >  SRR4302540.9948652/1‑94 (MQ=60)

                  TCTGCGTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAAC                                                                             <  SRR4302540.2496456/94‑1 (MQ=60)

                  TCTGCGTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAAC                                                                             >  SRR4302540.4244648/1‑94 (MQ=60)

                  TCTGCGTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAAC                                                                             >  SRR4302540.5075650/1‑94 (MQ=60)

                  TCTGCGTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAAC                                                                             >  SRR4302540.9142245/1‑94 (MQ=60)

                   CTGCGTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAcac                                                                            >  SRR4302540.7696755/1‑91 (MQ=60)

                   CTGCGTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACC                                                                            <  SRR4302540.229747/94‑1 (MQ=60)

                   CTGCGTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACC                                                                            >  SRR4302540.7696754/1‑94 (MQ=60)

                   CTGCGTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACC                                                                            <  SRR4302540.6380589/94‑1 (MQ=60)

                   CTGCGTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACC                                                                            <  SRR4302540.6720782/94‑1 (MQ=60)

                    TGCGTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCT                                                                           >  SRR4302540.1589053/1‑94 (MQ=60)

                    TGCGTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCT                                                                           <  SRR4302540.7726708/94‑1 (MQ=60)

                    GGCGTTTGTCGGGGAAAGATATGTCGCTTGTTAAGGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCT                                                                           <  SRR4302540.9735818/94‑1 (MQ=60)

                     GCGTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTG                                                                          >  SRR4302540.9882859/1‑94 (MQ=60)

                     GCGTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTG                                                                          >  SRR4302540.7093811/1‑94 (MQ=60)

                     GCGTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGGGCAACTTAATCAACATAACCTG                                                                          >  SRR4302540.3514060/1‑94 (MQ=60)

                      CGTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGC                                                                         <  SRR4302540.3393405/94‑1 (MQ=60)

                      CGTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGC                                                                         >  SRR4302540.3726169/1‑94 (MQ=60)

                      CGTTTGTCTGTGAAAGATATGTCGCTTATTAATGTGCAGGCACTGAGGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGC                                                                         <  SRR4302540.7814324/94‑1 (MQ=60)

                       GTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCA                                                                        >  SRR4302540.1231259/1‑94 (MQ=60)

                       GTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCA                                                                        >  SRR4302540.532626/1‑94 (MQ=60)

                       GTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCA                                                                        >  SRR4302540.9926654/1‑94 (MQ=60)

                       GTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGGAGTGCAACTTAATCAACATAACCTGCA                                                                        >  SRR4302540.3816224/1‑94 (MQ=60)

                         TTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGG                                                                      <  SRR4302540.8582855/94‑1 (MQ=60)

                         TTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGG                                                                      <  SRR4302540.1658789/94‑1 (MQ=60)

                          TGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGT                                                                     >  SRR4302540.7571961/1‑94 (MQ=60)

                           GTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATCACCTGCAGGTT                                                                    >  SRR4302540.7530778/1‑94 (MQ=60)

                           GTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTT                                                                    <  SRR4302540.2782014/94‑1 (MQ=60)

                            TCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTG                                                                   <  SRR4302540.2526514/94‑1 (MQ=60)

                               GTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTA                                                                >  SRR4302540.1072504/1‑94 (MQ=60)

                               GTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTA                                                                <  SRR4302540.720533/94‑1 (MQ=60)

                               GTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTA                                                                >  SRR4302540.6574313/1‑94 (MQ=60)

                               GTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTA                                                                >  SRR4302540.6574312/1‑94 (MQ=60)

                                TGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTCGTGCAACTTAATCAACATAACCTGCAGGTTGTTAT                                                               >  SRR4302540.1209246/1‑94 (MQ=60)

                                TGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTAT                                                               <  SRR4302540.9325386/94‑1 (MQ=60)

                                TGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTAT                                                               >  SRR4302540.2145630/1‑94 (MQ=60)

                                TGAAAGATATGGCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTAC                                                               <  SRR4302540.383384/94‑1 (MQ=60)

                                 GAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATC                                                              <  SRR4302540.1256384/94‑1 (MQ=60)

                                  AAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCG                                                             <  SRR4302540.2413175/94‑1 (MQ=60)

                                  AAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCG                                                             >  SRR4302540.6780205/1‑94 (MQ=60)

                                    AGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGG                                                           <  SRR4302540.9145677/94‑1 (MQ=60)

                                    AGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCCGCAGGTTGTTATCGGG                                                           >  SRR4302540.9084404/1‑94 (MQ=60)

                                      ATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCC                                                         >  SRR4302540.9731677/1‑94 (MQ=60)

                                      ATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCC                                                         >  SRR4302540.4482809/1‑94 (MQ=60)

                                      ATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGGTGTTATCGGGCC                                                         >  SRR4302540.4482810/1‑94 (MQ=60)

                                       TATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCA                                                        >  SRR4302540.1995764/1‑94 (MQ=60)

                                       TATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCA                                                        >  SRR4302540.9438319/1‑94 (MQ=60)

                                        ATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCAC                                                       >  SRR4302540.4671262/1‑94 (MQ=60)

                                        ATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCAC                                                       >  SRR4302540.4761330/1‑94 (MQ=60)

                                         TGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACA                                                      <  SRR4302540.8459806/94‑1 (MQ=60)

                                         TGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACA                                                      <  SRR4302540.8905207/94‑1 (MQ=60)

                                         TGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACA                                                      >  SRR4302540.4271727/1‑94 (MQ=60)

                                             GCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTT                                                  >  SRR4302540.5543104/1‑94 (MQ=60)

                                              CTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTC                                                 >  SRR4302540.1888675/1‑94 (MQ=60)

                                              CTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTC                                                 >  SRR4302540.7857723/1‑94 (MQ=60)

                                               TTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCA                                                >  SRR4302540.8465699/1‑94 (MQ=60)

                                                TGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAG                                               <  SRR4302540.5562562/94‑1 (MQ=60)

                                                 GTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGT                                              <  SRR4302540.3610434/94‑1 (MQ=60)

                                                 GTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGT                                              >  SRR4302540.2171351/1‑94 (MQ=60)

                                                 GTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGT                                              <  SRR4302540.1599233/94‑1 (MQ=60)

                                                  TTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTC                                             >  SRR4302540.8676859/1‑94 (MQ=60)

                                                  TTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTC                                             <  SRR4302540.3784911/94‑1 (MQ=60)

                                                   TAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCA                                            >  SRR4302540.1870520/1‑94 (MQ=60)

                                                    AATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAG                                           <  SRR4302540.4396888/94‑1 (MQ=60)

                                                     ATGTGCAGGCACTGAAGGACAAGCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGT                                          <  SRR4302540.7769167/94‑1 (MQ=60)

                                                       GTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAA                                        >  SRR4302540.4873716/1‑94 (MQ=60)

                                                         GCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAA                                      >  SRR4302540.664834/1‑94 (MQ=60)

                                                          CAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAG                                     <  SRR4302540.10094084/94‑1 (MQ=60)

                                                           AGGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGA                                    >  SRR4302540.6826033/1‑94 (MQ=60)

                                                            GGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGAT                                   <  SRR4302540.6490212/94‑1 (MQ=60)

                                                            GGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGAT                                   <  SRR4302540.4329324/94‑1 (MQ=60)

                                                            GGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGAT                                   <  SRR4302540.5609485/94‑1 (MQ=60)

                                                            GGCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGAT                                   >  SRR4302540.7161667/1‑94 (MQ=60)

                                                             GCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATG                                  <  SRR4302540.8344569/94‑1 (MQ=60)

                                                             GCACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATA                                  >  SRR4302540.3095526/1‑94 (MQ=60)

                                                              CACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGA                                 >  SRR4302540.5895921/1‑94 (MQ=60)

                                                               ACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAA                                >  SRR4302540.8198746/1‑94 (MQ=60)

                                                               ACTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAA                                >  SRR4302540.732352/1‑94 (MQ=60)

                                                                CTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAaagcgctagatcggaagagcgg                               >  SRR4302540.2083621/1‑72 (MQ=60)

                                                                CTGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAA                               >  SRR4302540.4184871/1‑94 (MQ=60)

                                                                 TGAAGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAAG                              >  SRR4302540.2750411/1‑94 (MQ=60)

                                                                    AGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGC                           >  SRR4302540.6570167/1‑94 (MQ=60)

                                                                    AGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGC                           <  SRR4302540.3638046/94‑1 (MQ=60)

                                                                    AGGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGC                           <  SRR4302540.1601037/94‑1 (MQ=60)

                                                                     GGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCC                          <  SRR4302540.7398447/94‑1 (MQ=60)

                                                                     GGACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCC                          <  SRR4302540.190578/94‑1 (MQ=60)

                                                                      GACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCG                         <  SRR4302540.2752332/94‑1 (MQ=60)

                                                                      GACAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCG                         >  SRR4302540.6945454/1‑94 (MQ=60)

                                                                        CAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCCGGTTGTTATCGGGCGACACGTTTAGTCAGTAAAAGATGAAATGGACGGT                       >  SRR4302540.10060620/1‑94 (MQ=60)

                                                                        CAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGT                       >  SRR4302540.10083248/1‑94 (MQ=60)

                                                                        CAATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGT                       >  SRR4302540.10060471/1‑94 (MQ=60)

                                                                          agagaagAATTGTCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCT                     <  SRR4302540.5625416/87‑1 (MQ=60)

                                                                          ATCGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCT                     <  SRR4302540.9867847/94‑1 (MQ=60)

                                                                            CGGGCAATTGGCGTAGTGCACCTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCTGA                   <  SRR4302540.4215438/94‑1 (MQ=60)

                                                                            CGGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCTGA                   >  SRR4302540.1815346/1‑94 (MQ=60)

                                                                            CGGGCAATTGGCGTAGTGCAACGTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCTGA                   >  SRR4302540.1815345/1‑94 (MQ=60)

                                                                             GGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCTGAT                  >  SRR4302540.1912374/1‑94 (MQ=60)

                                                                             GGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCTGAT                  <  SRR4302540.3987775/94‑1 (MQ=60)

                                                                             GGGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCTGAT                  <  SRR4302540.5029992/94‑1 (MQ=60)

                                                                             CGGCAATTGGCGTAGGGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCTGAT                  <  SRR4302540.5029991/94‑1 (MQ=60)

                                                                              GGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCTGATG                 <  SRR4302540.9640257/94‑1 (MQ=60)

                                                                              GGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCTGATG                 <  SRR4302540.5492489/94‑1 (MQ=60)

                                                                              GGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCTGATG                 >  SRR4302540.1655922/1‑94 (MQ=60)

                                                                              GGCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCTGATG                 >  SRR4302540.1655921/1‑94 (MQ=60)

                                                                              GGCAATTGGCGTAGTACAACTTAATCAACATAACGTGCAGGTTGCTATCGGTCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCTGATG                 <  SRR4302540.4080862/94‑1 (MQ=60)

                                                                               GCAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCTGATGC                >  SRR4302540.4912322/1‑94 (MQ=60)

                                                                                CAATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCTGATGCA               >  SRR4302540.424482/1‑94 (MQ=60)

                                                                                 AATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCTGATGCAT              <  SRR4302540.5203803/94‑1 (MQ=60)

                                                                                 AATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCTGATGCAT              <  SRR4302540.3234609/94‑1 (MQ=60)

                                                                                 AATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCTGATGCAT              <  SRR4302540.8744363/94‑1 (MQ=60)

                                                                                  ATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCTGATGCATA             >  SRR4302540.4531156/1‑94 (MQ=60)

                                                                                  ATTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCTGATGCATA             >  SRR4302540.4531155/1‑94 (MQ=60)

                                                                                   TTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCTGATGCATAC            <  SRR4302540.7786200/94‑1 (MQ=60)

                                                                                   TTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCTGATGCATAC            <  SRR4302540.6930484/94‑1 (MQ=60)

                                                                                   TTGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCTGATGCATAC            <  SRR4302540.3953959/94‑1 (MQ=60)

                                                                                    TGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTTTTATCGTGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCTGATGGATACT           >  SRR4302540.3616424/1‑94 (MQ=60)

                                                                                    TGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCTGATGCATACT           >  SRR4302540.5422738/1‑94 (MQ=60)

                                                                                    TGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCTGATGCATACT           <  SRR4302540.6697368/94‑1 (MQ=60)

                                                                                    TGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCTGATGCATACT           >  SRR4302540.1763946/1‑94 (MQ=60)

                                                                                    TGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCTGATGCATACT           <  SRR4302540.7085563/94‑1 (MQ=60)

                                                                                    TGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCTGATGCATACT           >  SRR4302540.400605/1‑94 (MQ=60)

                                                                                    TGGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGGAAAAGATGAAATGGCCGGTCTGATGCATACT           >  SRR4302540.1763945/1‑94 (MQ=60)

                                                                                     GGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCATTCAGTAAAAGATGAAATGGCCGGTCTGATGCATACTG          <  SRR4302540.6094932/94‑1 (MQ=60)

                                                                                     GGCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCTGATGCATACTG          >  SRR4302540.5137421/1‑94 (MQ=60)

                                                                                      GCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCTGATGCATACTGT         >  SRR4302540.7580950/1‑94 (MQ=60)

                                                                                      GCGTAGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCTGATGCATACTGT         >  SRR4302540.7580951/1‑94 (MQ=60)

                                                                                          AGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCTGATGCATACTGTCCAG     <  SRR4302540.7742844/94‑1 (MQ=60)

                                                                                          AGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCTGATGCATACTGTCCAG     <  SRR4302540.336100/94‑1 (MQ=60)

                                                                                          AGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCTGATGCATACTGTCCAG     >  SRR4302540.8416205/1‑94 (MQ=60)

                                                                                          AGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCTGATGCATACTGTCCAG     <  SRR4302540.1456479/94‑1 (MQ=60)

                                                                                          AGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCTGATGCATACTGTCCAG     <  SRR4302540.2788891/94‑1 (MQ=60)

                                                                                          AGTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATAAAATGGCCGGTCTGATGCATACTGTCCAG     <  SRR4302540.5760011/94‑1 (MQ=60)

                                                                                           GTGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCTGATGCATACTGTCCAGG    >  SRR4302540.9420274/1‑94 (MQ=60)

                                                                                            TGCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCTGATGCATACTGTCCAGGC   >  SRR4302540.8477704/1‑94 (MQ=60)

                                                                                            TACAACTTAATCAACATAAACTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCTGATGCATACTGTCCAGAC   <  SRR4302540.9065963/94‑1 (MQ=60)

                                                                                             GCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCTGATGCATACTGTCCAGGCA  <  SRR4302540.4147449/94‑1 (MQ=60)

                                                                                             GCAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCTGATGCATACTGTCCAGGCA  <  SRR4302540.2486349/94‑1 (MQ=60)

CGATAACTGCATTACCCGTCTGCGTTTGTCTGTGAAAGATATGTCGCTTGTTAATGTGCAGGCACTGAAGGACAATCGGGCAATTGGCGTAGTACAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCTGATGCATACTGTCCAGGCA  >  NC_000913/1698782‑1698968

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`