Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1548 |
369.5 |
20095359 |
96.9% |
19472402 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,701,951 |
T→C |
S128G (AGC→GGC) |
b1624 ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,701,951 | 0 | T | C | 99.1%
| 651.6
/ ‑2.8
| 211 | S128G (AGC→GGC) | b1624 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (2/0); new base C (108/101); total (110/101) |
| Fisher's exact test for biased strand distribution p-value = 4.99e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.29e-01 |
Only 100 of 217 total aligned reads displayed.
GCGGACGGAAGCGGTCAAAATGAGACTCAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCTATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGCTCTCGCGCTTGTGACAGTGTCACGG > NC_000913/1701861‑1702040
|
gCGGACGGAAGGGGTCAAAATGAGACTCAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCAt < 2:2712483/93‑1 (MQ=255)
gCGGACGGAAGCGGTCAAAATGAGACTCAAAGTAAGCACCTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCAt < 2:7039149/93‑1 (MQ=255)
gCGGACGGAAGCGGTCAAAATGAGACTCAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCAt < 2:2648722/93‑1 (MQ=255)
ggacggaAGCGGTCAAAATGAGACTCAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATcc < 1:1682329/93‑1 (MQ=255)
gacggaAGCGGTCAAAATGAGACTCAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATccc < 1:8753126/93‑1 (MQ=255)
cggaAGCGGTCAAAATGAGACTCAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAg < 2:4684784/93‑1 (MQ=255)
ggaAGCGGTCAAAATGAGACTCAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGc > 2:3140278/1‑93 (MQ=255)
gaAGCGGTCAAAATGAGACTCAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGca > 2:362238/1‑92 (MQ=255)
gaAGCGGTCAAAATGAGACTCAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCg > 2:1944779/1‑93 (MQ=255)
gaAGCGGTCAAAATGAGACTCAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCg > 1:7707797/1‑93 (MQ=255)
aaGCGGTCAAAATGAGACTCAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGa < 1:5791698/93‑1 (MQ=255)
aGCGGTCAAAATGAGACTCAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGAc > 2:2521528/1‑93 (MQ=255)
ggTCAAAATGAGACTCAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGt < 1:8264532/93‑1 (MQ=255)
tCAAAATGAGACTCAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGtga > 2:8741701/1‑91 (MQ=255)
cAAAATGAGACTCAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTAt < 1:5890407/93‑1 (MQ=255)
aaaaTGAGACTCAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATg < 2:8348259/93‑1 (MQ=255)
aaaTGAGACTCAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATgg > 1:4712548/1‑93 (MQ=255)
aTGAGACTCAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGaa > 2:9363817/1‑93 (MQ=255)
aTGAGACTCAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGaa > 2:2051697/1‑93 (MQ=255)
tGAGACTCAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAAt > 1:1121257/1‑93 (MQ=255)
tGAGACTCAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAAt > 1:8958499/1‑93 (MQ=255)
gagaCTCAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATa < 2:7341757/93‑1 (MQ=255)
agaCTCAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATac < 2:6060063/93‑1 (MQ=255)
agaCTCAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATac < 2:4092804/93‑1 (MQ=255)
agaCTCAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATac < 2:1011870/93‑1 (MQ=255)
aCTCAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATacag < 2:8395619/93‑1 (MQ=255)
cTCAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAACCCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATacaga < 2:1575299/93‑1 (MQ=255)
cTCAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATacaga < 1:6599481/93‑1 (MQ=255)
tCAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATacagac > 1:8389624/1‑93 (MQ=255)
cAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATacagaca < 1:5552665/93‑1 (MQ=255)
aaaGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATaccgacag < 1:9546041/93‑1 (MQ=255)
aaaGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATacagacag > 1:9271241/1‑93 (MQ=255)
aaaGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATacagacag > 1:8246322/1‑93 (MQ=255)
aaaGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATacagacag < 2:555322/93‑1 (MQ=255)
aaaGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATacagacag > 1:6908362/1‑93 (MQ=255)
aaaGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATacagacag > 2:6468642/1‑93 (MQ=255)
aaGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGc < 2:2214949/93‑1 (MQ=255)
tAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAGCCTTTTAGCGTCAAGAAATCGCCATCCCAGCGCCGGTTATGGAATACAGACAGcaca < 2:4254259/93‑1 (MQ=255)
tAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGcaca < 2:9763887/93‑1 (MQ=255)
aaGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCacac < 1:4832860/93‑1 (MQ=255)
aaGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCacac < 2:6165328/93‑1 (MQ=255)
aGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACg < 1:9061211/93‑1 (MQ=255)
cAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGcc < 1:3190515/93‑1 (MQ=255)
aCTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGCTATGGAATACAGACAGCACACGcccc > 2:7484340/1‑93 (MQ=255)
cACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGc > 2:4927393/1‑93 (MQ=255)
cccAGCACGCCTTCCGCGAGTAACCCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCtt < 2:3871758/93‑1 (MQ=255)
ccAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCttt > 1:3158979/1‑93 (MQ=255)
cAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCtttt > 1:1204465/1‑93 (MQ=255)
aGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGCTATGGAATACAGACAGCACACGCCCCAGGCttttt > 1:5014309/1‑93 (MQ=255)
gCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTg < 1:2644362/93‑1 (MQ=255)
cGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCa > 1:6351107/1‑93 (MQ=255)
cGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCa > 1:7473692/1‑93 (MQ=255)
gCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAg > 1:6821086/1‑93 (MQ=255)
ccTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAgc > 2:7817961/1‑93 (MQ=255)
cTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAgcg > 1:1465239/1‑93 (MQ=255)
ttCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAgcgc > 1:2863055/1‑93 (MQ=255)
ttCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAgcgc > 2:3233729/1‑93 (MQ=255)
ttCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGAAAGCACACGCCCCAGGCTTTTTGCCAgcgc > 2:902392/1‑93 (MQ=255)
ctCCGCGAAGAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAgcgc < 1:8694393/92‑1 (MQ=255)
tCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCa < 1:1563873/93‑1 (MQ=255)
tCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCa > 2:5124380/1‑93 (MQ=255)
gcgAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATcc > 2:8568839/1‑93 (MQ=255)
cgAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCa < 1:4901240/93‑1 (MQ=255)
gAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAg < 1:9207834/93‑1 (MQ=255)
gAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAg < 1:3219123/93‑1 (MQ=255)
gAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAg < 2:7739632/93‑1 (MQ=255)
aGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGc > 1:3051966/1‑93 (MQ=255)
aGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGc < 1:9684779/93‑1 (MQ=255)
tAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGctc > 2:810896/1‑93 (MQ=255)
tAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGctc > 2:2706124/1‑93 (MQ=255)
aaaCCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGctct > 1:8192606/1‑93 (MQ=255)
aaCCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGCtctc > 1:6981137/1‑93 (MQ=255)
aaCCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGCtctc > 2:6742195/1‑93 (MQ=255)
aaCCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGCtctc < 1:1678043/93‑1 (MQ=255)
aCCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGCTCTcg > 1:4016162/1‑93 (MQ=255)
aCCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGCTCTcg > 2:8892711/1‑93 (MQ=255)
ccTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGCTCTcgc > 1:8970450/1‑93 (MQ=255)
tttAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGCTCTCGCGCt > 2:5793082/1‑93 (MQ=255)
ttAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGCTCTCGCGCtt < 1:4202814/93‑1 (MQ=255)
ttAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGCTCTCGCGCtt > 2:7636921/1‑93 (MQ=255)
tAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGCTCTCGCGCTtg < 2:3339485/93‑1 (MQ=255)
tAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGCTCTCGCGCTtg < 2:5381890/93‑1 (MQ=255)
aGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAAACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGCTCTCGCGCTtgt < 2:4542519/93‑1 (MQ=255)
gCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGCTCTCGCGCTtgtg < 2:9216601/93‑1 (MQ=255)
gCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGCTCTCGCGCTtgtg > 1:3869712/1‑93 (MQ=255)
cGTCAAGACATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGCTCTCGCGCTTGTGa < 1:2347793/93‑1 (MQ=255)
cGTCAAGAAATCGCTATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGCTCTCGCGCTTGTGa > 1:2727761/1‑93 (MQ=255)
cGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGCTCTCGCGCTTGTGa < 2:2161436/93‑1 (MQ=255)
gTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGCTCTCGCGCTTGTGAc < 1:2094002/93‑1 (MQ=255)
gTCAAGAAATCCCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGCTCTCGCGCTTGTGAc < 1:7251006/93‑1 (MQ=255)
tCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGCTCTCGCGCTTGTGACa < 2:9283565/93‑1 (MQ=255)
tCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGCTCTCGCGCTTGTGACa > 1:3544448/1‑93 (MQ=255)
gAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGCTCTCGCGCTTGTGACAgtgt > 1:2408998/1‑93 (MQ=255)
gAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGCTCTCGCGCTTGTGACAgtgt < 1:8345808/93‑1 (MQ=255)
aaaTCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGCTCTCGCGCTTGTGACAGTGTc > 2:6753726/1‑93 (MQ=255)
aaTCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGCTCTCGCGCTTGTGACAGTGTCa > 2:6255221/1‑93 (MQ=255)
aaTCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGCTCTCGCGCTTGTGACAGTGTCa > 1:7044154/1‑93 (MQ=255)
aTCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGCTCTCGCGCTTGTGACAGTGTCAc > 2:2109644/1‑93 (MQ=255)
ccGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGCTCTCGCGCTTGTGCCAGTGTCACg < 2:1661473/92‑1 (MQ=255)
cGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGCTCTCGCGCTTGTGACAGTGTCACgg < 2:9820859/93‑1 (MQ=255)
|
GCGGACGGAAGCGGTCAAAATGAGACTCAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCTATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGCTCTCGCGCTTGTGACAGTGTCACGG > NC_000913/1701861‑1702040
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CCTGCGGACGGAAGCGGTCAAAATGAGACTCAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCTATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGCTCTCGCGCTTGTGACAGTGTCACGGTAAA > NC_000913/1701858‑1702044
|
CCTGCGGACGGAAGCGGTCAAAATGAGACTCAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCC > SRR4302540.1254450/1‑94 (MQ=60)
TGCGGACGGAAGCGGTCAAAATGAGACTCAAAGTAAGCAACTTCACCCATCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCAT > SRR4302540.8381895/1‑94 (MQ=60)
TGCGGACGGAAGCGGTCAAAATGAGACTCAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCAT < SRR4302540.9671159/94‑1 (MQ=60)
GCGGACGGAAGCGGTCAAAATGAGACTCAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATC < SRR4302540.7079864/94‑1 (MQ=60)
GCGGACGGAAGCGGTCAAAATGAGACTCAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATC < SRR4302540.4948311/94‑1 (MQ=60)
GGACGGAAGCGGTCAAAATGAGACTCAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCC < SRR4302540.1700591/94‑1 (MQ=60)
GACGGAAGCGGTCAAAATGAGACTCAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCA < SRR4302540.8854672/94‑1 (MQ=60)
acagagaCGGTCCAAATGAGACTGAAAGTAAGGAACTTCCCCCAGCACGCCTTACGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAG < SRR4302540.291839/87‑1 (MQ=60)
ACGGAAGCGGTCAAAATGAGACTCAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAG < SRR4302540.291838/94‑1 (MQ=60)
ACGGAAGCGGTCAAAATGAGACTCAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAG < SRR4302540.6220948/94‑1 (MQ=60)
CGGAAGCGGTCAAAATGAGACTCAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGC < SRR4302540.1214043/94‑1 (MQ=60)
GGAAGCGGTCAAAATGAGACTCAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCG > SRR4302540.7796215/1‑94 (MQ=60)
AAGCGGTCAAAATGAGACTCAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGAC < SRR4302540.5855691/94‑1 (MQ=60)
AGCGGTCAAAATGAGACTCAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACG > SRR4302540.2870818/1‑94 (MQ=60)
GCGGTCAAAATGAGACTCAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAAGCGCCATCCCAGCGACGG > SRR4302540.9073268/1‑94 (MQ=60)
CGGTCAAAATGAGACTCAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGT > SRR4302540.10037555/1‑94 (MQ=60)
GGTCAAAATGAGACTCAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTT < SRR4302540.8360568/94‑1 (MQ=60)
GGTCAAAATGAGACTCAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTT < SRR4302540.8360567/94‑1 (MQ=60)
CAAAATGAGACTCAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATG < SRR4302540.7001309/94‑1 (MQ=60)
CAAAATGAGACTCAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATG < SRR4302540.5955484/94‑1 (MQ=60)
AAAATGAGACTCAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGG > SRR4302540.9543953/1‑94 (MQ=60)
AAAATGAGACTCAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGG > SRR4302540.4762906/1‑94 (MQ=60)
AATGAGACTCAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAA > SRR4302540.4796783/1‑94 (MQ=60)
ATGAGACTCAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAAT > SRR4302540.1132894/1‑94 (MQ=60)
ATGAGACTCAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAAT > SRR4302540.9064394/1‑94 (MQ=60)
TGAGACTCAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATA > SRR4302540.5927013/1‑94 (MQ=60)
ttgagcttctaccagcaaatacctCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATAC < SRR4302540.758994/70‑1 (MQ=60)
AGACTCAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACA < SRR4302540.6510701/94‑1 (MQ=60)
ACTCAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGA > SRR4302540.1430251/1‑94 (MQ=60)
ACTCAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGA > SRR4302540.9162136/1‑94 (MQ=60)
CTCAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGAC > SRR4302540.1700399/1‑94 (MQ=60)
CTCAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGAC < SRR4302540.4298626/94‑1 (MQ=60)
CTCAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGAC > SRR4302540.5015638/1‑94 (MQ=60)
CTCAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGAC > SRR4302540.8486971/1‑94 (MQ=60)
CTCAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGAC < SRR4302540.6672562/94‑1 (MQ=60)
CTCAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGAC > SRR4302540.8486970/1‑94 (MQ=60)
TCAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACA > SRR4302540.6898811/1‑94 (MQ=60)
CAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAG > SRR4302540.8342172/1‑94 (MQ=60)
CAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAG > SRR4302540.9382102/1‑94 (MQ=60)
CAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAG < SRR4302540.5613827/94‑1 (MQ=60)
CAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAG > SRR4302540.6985206/1‑94 (MQ=60)
AAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACCGACAGC < SRR4302540.9658982/94‑1 (MQ=60)
AGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCAC > SRR4302540.9355522/1‑94 (MQ=60)
TAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACAC > SRR4302540.7355305/1‑94 (MQ=60)
GAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACAC < SRR4302540.9303749/94‑1 (MQ=60)
AAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACG < SRR4302540.4884632/94‑1 (MQ=60)
AGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGC < SRR4302540.9170007/94‑1 (MQ=60)
GCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCC < SRR4302540.6974251/94‑1 (MQ=60)
CAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCC < SRR4302540.8884698/94‑1 (MQ=60)
CAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCC < SRR4302540.3225174/94‑1 (MQ=60)
CAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCC < SRR4302540.3225173/94‑1 (MQ=60)
ACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCA < SRR4302540.3433559/94‑1 (MQ=60)
ACGTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCA < SRR4302540.4105307/94‑1 (MQ=60)
CTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAG > SRR4302540.1672123/1‑94 (MQ=60)
CTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAG < SRR4302540.8302414/94‑1 (MQ=60)
TTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGG > SRR4302540.1704461/1‑94 (MQ=60)
CCCAGCCCCCCCTCCCCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTT < SRR4302540.8812904/94‑1 (MQ=60)
CCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTT > SRR4302540.3193350/1‑94 (MQ=60)
CCCAGCACGCCTCCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTT < SRR4302540.8812905/94‑1 (MQ=60)
CCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTT > SRR4302540.1216834/1‑94 (MQ=60)
CAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTT < SRR4302540.3854119/94‑1 (MQ=60)
CAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGCTATGGAATACAGACAGCACACGCCCCAGGCTTTTT > SRR4302540.5068599/1‑94 (MQ=60)
AGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTG < SRR4302540.1504126/94‑1 (MQ=60)
GCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGC < SRR4302540.2673047/94‑1 (MQ=60)
CACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCC > SRR4302540.6887118/1‑94 (MQ=60)
ACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCA > SRR4302540.6421837/1‑94 (MQ=60)
ACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCA > SRR4302540.7557092/1‑94 (MQ=60)
CGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAG > SRR4302540.6896599/1‑94 (MQ=60)
CCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGC < SRR4302540.5370632/94‑1 (MQ=60)
CCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCG > SRR4302540.1481223/1‑94 (MQ=60)
CCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCG < SRR4302540.8475656/94‑1 (MQ=60)
CTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGC > SRR4302540.2894104/1‑94 (MQ=60)
CTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGC > SRR4302540.2894103/1‑94 (MQ=60)
CTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGC > SRR4302540.2410604/1‑94 (MQ=60)
CTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTCTTTGCCAGCGC > SRR4302540.9591043/1‑94 (MQ=60)
ctccgcgaagAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCA < SRR4302540.8795327/84‑1 (MQ=60)
TCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCAT < SRR4302540.1581036/94‑1 (MQ=60)
CGCGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCC < SRR4302540.7742799/94‑1 (MQ=60)
CGAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAG < SRR4302540.4953969/94‑1 (MQ=60)
GAGTAAACCTTTTAGCGTCAAGAAATCGCTATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGC > SRR4302540.9758744/1‑94 (MQ=60)
GAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGC > SRR4302540.3085454/1‑94 (MQ=60)
GAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGC < SRR4302540.9318323/94‑1 (MQ=60)
GAGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGC < SRR4302540.3254090/94‑1 (MQ=60)
AGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGCT < SRR4302540.9798719/94‑1 (MQ=60)
AGTAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGCT > SRR4302540.3994124/1‑94 (MQ=60)
TAAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGCTCT > SRR4302540.8287799/1‑94 (MQ=60)
AAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGCTCTC > SRR4302540.7058681/1‑94 (MQ=60)
AAACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGCTCTC < SRR4302540.1965006/94‑1 (MQ=60)
AACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGCTCTCG > SRR4302540.4059422/1‑94 (MQ=60)
AACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGCTCTCG < SRR4302540.5518838/94‑1 (MQ=60)
AACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGCTCTCG < SRR4302540.1696263/94‑1 (MQ=60)
AACCTTTTAGCGTCAAGAAATCGCCATCCCAACGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGCTCTCG > SRR4302540.7223389/1‑94 (MQ=60)
ACCTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGCTCTCGC > SRR4302540.9076936/1‑94 (MQ=60)
CTTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCAAGCGCATCCAGCTCTCGCGC > SRR4302540.2453562/1‑94 (MQ=60)
TTTTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGCTCTCGCGCT < SRR4302540.8214188/94‑1 (MQ=60)
TTAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGCTCTCGCGCTTG < SRR4302540.4248551/94‑1 (MQ=60)
TAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGCTCTCGCGCTTGT > SRR4302540.4045609/1‑94 (MQ=60)
TAGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGCTCTCGCGCTTGT < SRR4302540.8175707/94‑1 (MQ=60)
AGCGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGCTCTCGCGCTTGTG > SRR4302540.3911778/1‑94 (MQ=60)
GCGTCAAGAAATCGCTATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGCTCTCGCGCTTGTGA > SRR4302540.2757181/1‑94 (MQ=60)
CGTCAAGACATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGCTCTCGCGCTTGTGAC < SRR4302540.2373080/94‑1 (MQ=60)
CGTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGATCTCGCGCTTGTGAC > SRR4302540.5682279/1‑94 (MQ=60)
GTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGCTCTCGCGCTTGTGACA < SRR4302540.2116489/94‑1 (MQ=60)
GTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGCTCTCGCGCTTGTGACA > SRR4302540.3583163/1‑94 (MQ=60)
GTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGCTCTCGCGCTTGTGACA > SRR4302540.2714520/1‑94 (MQ=60)
GTCAAGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGCTCTCGCGCTTGTGACA < SRR4302540.2116487/94‑1 (MQ=60)
GTCAAGAAATCCCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGCTCTCGCGCTTGTGACA < SRR4302540.7331917/94‑1 (MQ=60)
AGAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGCTCTCGCGCTTGTGACAGTGT > SRR4302540.2434973/1‑94 (MQ=60)
GAAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGCTCTCGCGCTTGTGACAGTGTC < SRR4302540.8442672/94‑1 (MQ=60)
AAATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGCTCTCGCGCTTGTGACAGTGTCA > SRR4302540.7122477/1‑94 (MQ=60)
AATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGCTCTCGCGCTTGTTACAGTGTCAC < SRR4302540.3219612/94‑1 (MQ=60)
ATCGCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGCTCTCGCGCTTGTGACAGTGTCACG < SRR4302540.3162389/94‑1 (MQ=60)
GCCATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGCTCTCGCGCTTGTGACAGTGTCACGGTA < SRR4302540.4984124/94‑1 (MQ=60)
CATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGCTCTCGCGCTTGTGACAGTGTCACGGTAAA > SRR4302540.5081211/1‑94 (MQ=60)
CATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGCTCTCGCGCTTGTGACAGTGTCACGGTAAA > SRR4302540.8356741/1‑94 (MQ=60)
|
CCTGCGGACGGAAGCGGTCAAAATGAGACTCAAAGTAAGCAACTTCACCCAGCACGCCTTCCGCGAGTAAACCTTTTAGCGTCAAGAAATCGCTATCCCAGCGACGGTTATGGAATACAGACAGCACACGCCCCAGGCTTTTTGCCAGCGCATCCAGCTCTCGCGCTTGTGACAGTGTCACGGTAAA > NC_000913/1701858‑1702044
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
