Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,702,726	T→C	intergenic (‑394/‑247)	b1624 ← / → b1625	hypothetical protein/hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,702,726	0	T	C	99.7%	1083.4 / ‑5.4	333	intergenic (‑394/‑247)	b1624/b1625	hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (1/0); new base C (146/186); total (147/186)
Fisher's exact test for biased strand distribution p-value = 4.41e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.07e-01

Only 100 of 348 total aligned reads displayed.

CGTGGCGAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTCAGGGATAGT  >  NC_000913/1702637‑1702815

  tggcgAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCg                                                                                      >  1:2090326/1‑93 (MQ=255)

  tggcgAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCg                                                                                      >  1:3133502/1‑93 (MQ=255)

    gcgAGTCACATTGAGAACTTGCAGCCTGCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTc                                                                                    <  1:760435/93‑1 (MQ=255)

    gcgAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTc                                                                                    <  1:9515315/93‑1 (MQ=255)

    gcgAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTc                                                                                    <  2:7825782/93‑1 (MQ=255)

    gcgAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTc                                                                                    >  2:2689142/1‑93 (MQ=255)

    gcgAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTc                                                                                    <  2:3839202/93‑1 (MQ=255)

    gcgAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTc                                                                                    <  2:8734813/93‑1 (MQ=255)

     ggAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTcc                                                                                   <  2:5655326/92‑1 (MQ=255)

       aGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCgg                                                                                 >  2:3091814/1‑93 (MQ=255)

        gTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCggg                                                                                <  1:2279078/93‑1 (MQ=255)

        gTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCggg                                                                                <  2:5259457/93‑1 (MQ=255)

           acaTTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGc                                                                             <  2:2987308/93‑1 (MQ=255)

           acaTTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGc                                                                             <  1:5586245/93‑1 (MQ=255)

            caTTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCa                                                                            <  1:2379207/93‑1 (MQ=255)

             aTTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCAt                                                                           >  2:8383181/1‑93 (MQ=255)

              ttGACAACTATCAGCCTCCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATg                                                                          <  1:8987059/93‑1 (MQ=255)

              ttGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATg                                                                          <  2:552461/93‑1 (MQ=255)

              ttGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATg                                                                          >  2:6244281/1‑93 (MQ=255)

               tGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGt                                                                         <  1:8221291/93‑1 (MQ=255)

               tGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGt                                                                         <  1:539228/93‑1 (MQ=255)

                gACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCTGGTGCATGtt                                                                        <  2:6549974/93‑1 (MQ=255)

                gACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGtt                                                                        <  1:6497292/93‑1 (MQ=255)

                gACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGtt                                                                        >  2:8181743/1‑93 (MQ=255)

                 aCAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGttt                                                                       >  1:7700488/1‑93 (MQ=255)

                    aCTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTcc                                                                    >  1:7851921/1‑92 (MQ=255)

                    aCTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCa                                                                    >  1:1446336/1‑93 (MQ=255)

                      tATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACt                                                                  >  1:3430073/1‑93 (MQ=255)

                       aTCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACtt                                                                 >  1:9805986/1‑93 (MQ=255)

                        tCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTg                                                                <  2:6746601/93‑1 (MQ=255)

                         cAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGt                                                               <  1:1397689/93‑1 (MQ=255)

                          aGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTc                                                              <  2:4753491/93‑1 (MQ=255)

                          aGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTc                                                              <  1:5052198/93‑1 (MQ=255)

                           gCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCg                                                             >  2:9114711/1‑93 (MQ=255)

                           gCCACCTGAACAGAGTGCGTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCg                                                             <  1:8694202/93‑1 (MQ=255)

                            ccACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCgg                                                            >  2:2383922/1‑93 (MQ=255)

                             cACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGa                                                           <  1:8570449/93‑1 (MQ=255)

                                cTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGatat                                                        <  2:140364/93‑1 (MQ=255)

                                 tGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATAtt                                                       <  2:3290880/93‑1 (MQ=255)

                                  gAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTa                                                      <  1:10030166/93‑1 (MQ=255)

                                  gAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTa                                                      <  2:2336790/93‑1 (MQ=255)

                                  gAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTa                                                      <  2:5619337/93‑1 (MQ=255)

                                  gAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTACGGGTGCATGTTTTCACTTGTCGGATATTa                                                      <  2:2773670/93‑1 (MQ=255)

                                   aaCAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTaa                                                     <  1:2200338/93‑1 (MQ=255)

                                    aCAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTaaa                                                    <  1:2711827/93‑1 (MQ=255)

                                      agagTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCTGGGTGCATGTTTTCACTTGTCGGATATTAAAcc                                                  >  2:3913434/1‑93 (MQ=255)

                                      agagTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAAcc                                                  >  2:9739041/1‑93 (MQ=255)

                                      agagTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAAcc                                                  >  1:3257758/1‑93 (MQ=255)

                                       gagTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCa                                                 >  2:4173610/1‑93 (MQ=255)

                                         gTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAgg                                               <  2:9040416/93‑1 (MQ=255)

                                         gTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAgg                                               >  1:5474653/1‑93 (MQ=255)

                                            cTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTGTTCACTTGTCGGATATTAAACCAGGAAt                                            >  1:5984957/1‑93 (MQ=255)

                                             ttCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAAtt                                           >  1:113247/1‑93 (MQ=255)

                                             ttCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAAtt                                           <  1:6106756/93‑1 (MQ=255)

                                               cGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATtta                                         >  2:8521047/1‑93 (MQ=255)

                                                ggTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATttat                                        >  2:1008888/1‑93 (MQ=255)

                                                 gTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATttatt                                       >  1:8460494/1‑93 (MQ=255)

                                                  tACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATttatta                                      <  2:7423318/93‑1 (MQ=255)

                                                  tACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATttatta                                      >  2:3420887/1‑93 (MQ=255)

                                                   acaacaCAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAATCCAGGAATTtattat                                     <  1:6709277/93‑1 (MQ=255)

                                                   acaacaCAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTtattat                                     >  2:1788527/1‑93 (MQ=255)

                                                     aacaCAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCt                                   >  1:734371/1‑93 (MQ=255)

                                                     aacaCAAGTAAGCTCTGCACTAGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCt                                   <  2:4466311/93‑1 (MQ=255)

                                                      acacAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCtt                                  >  2:158234/1‑93 (MQ=255)

                                                       cacaAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTg                                 >  2:5948583/1‑93 (MQ=255)

                                                       cacaAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTg                                 <  2:5152831/93‑1 (MQ=255)

                                                         caAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGtt                               >  1:1496178/1‑93 (MQ=255)

                                                         caAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGtt                               >  2:6953268/1‑93 (MQ=255)

                                                          aaGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTc                              <  1:8171537/93‑1 (MQ=255)

                                                          aaGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTc                              >  1:4661720/1‑93 (MQ=255)

                                                            gTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGa                            <  1:6414103/93‑1 (MQ=255)

                                                             tAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGAt                           >  2:5770905/1‑93 (MQ=255)

                                                                gCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGAtgtt                        <  1:9255778/93‑1 (MQ=255)

                                                                gCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGAtgtt                        <  1:7963706/93‑1 (MQ=255)

                                                                 ctctGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGAtgttg                       <  1:5797158/93‑1 (MQ=255)

                                                                   ctGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATgttgtt                     >  2:1367425/1‑93 (MQ=255)

                                                                   ctGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATgttgtt                     <  1:3696763/93‑1 (MQ=255)

                                                                   ctGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATgttgtt                     >  1:9165388/1‑93 (MQ=255)

                                                                   ctGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATgttgtt                     <  1:6792358/93‑1 (MQ=255)

                                                                    tGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGttgttg                    <  2:6119621/93‑1 (MQ=255)

                                                                      cACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGt                  <  1:5003542/93‑1 (MQ=255)

                                                                       aCTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTg                 >  2:9508488/1‑93 (MQ=255)

                                                                       aCTTGGGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTg                 <  1:4125717/93‑1 (MQ=255)

                                                                        cTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGa                >  2:9184396/1‑93 (MQ=255)

                                                                         ttGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGAt               >  1:5297472/1‑93 (MQ=255)

                                                                         ttGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGAt               >  2:4044232/1‑93 (MQ=255)

                                                                          tgtgGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGAtt              <  1:7106633/93‑1 (MQ=255)

                                                                           gtgGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTg             <  2:9352575/93‑1 (MQ=255)

                                                                           gtgGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTg             <  2:3654575/93‑1 (MQ=255)

                                                                           gtgGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTg             <  1:9659834/93‑1 (MQ=255)

                                                                             ggAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTc           <  2:7946362/93‑1 (MQ=255)

                                                                             ggAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTc           <  1:7427284/93‑1 (MQ=255)

                                                                              gAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTCa          <  2:1851119/93‑1 (MQ=255)

                                                                              gAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTCa          >  1:4800267/1‑93 (MQ=255)

                                                                               aGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTCAg         >  1:7204958/1‑93 (MQ=255)

                                                                               aGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTCAg         >  2:3690218/1‑93 (MQ=255)

                                                                                   aCATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTCAGGGAt     >  1:2874166/1‑93 (MQ=255)

                                                                                     aTGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTCAGGGATAg   >  2:6662452/1‑93 (MQ=255)

                                                                                      tgccgcCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTCATGGATAGt  >  1:4323063/1‑93 (MQ=255)

                                                                                      tgccgcCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTCAGGGATAGt  >  2:6462469/1‑93 (MQ=255)

CGTGGCGAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTCAGGGATAGT  >  NC_000913/1702637‑1702815

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TGGCGTGGCGAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTCAGGGATAGTAAAG  >  NC_000913/1702634‑1702819

TGGCGTGGCGAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCG                                                                                              <  SRR4302540.2970969/94‑1 (MQ=60)

   CGTGGCGAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCC                                                                                           <  SRR4302540.9331620/94‑1 (MQ=60)

   CGTGGCGAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCC                                                                                           <  SRR4302540.6937570/94‑1 (MQ=60)

   CGTGGCGAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCC                                                                                           <  SRR4302540.6937571/94‑1 (MQ=60)

    GTGGCGAGTCACATTGACAACTATCAGCCACCTGCACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCG                                                                                          >  SRR4302540.2112780/1‑94 (MQ=60)

    GTGGCGAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCG                                                                                          >  SRR4302540.2112779/1‑94 (MQ=60)

    GTGGCGAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCG                                                                                          >  SRR4302540.3167688/1‑94 (MQ=60)

    GTGGCGAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCG                                                                                          >  SRR4302540.6096156/1‑94 (MQ=60)

    GTGGCGAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCG                                                                                          >  SRR4302540.6593890/1‑94 (MQ=60)

    GTGGCGAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCG                                                                                          >  SRR4302540.7010478/1‑94 (MQ=60)

    GGGGCGAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCG                                                                                          <  SRR4302540.3014733/94‑1 (MQ=60)

     TGGCGAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGT                                                                                         <  SRR4302540.734933/94‑1 (MQ=60)

     TGGCGAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGT                                                                                         <  SRR4302540.8287741/94‑1 (MQ=60)

     TGGCGAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGT                                                                                         >  SRR4302540.2403010/1‑94 (MQ=60)

      GGCGAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTC                                                                                        >  SRR4302540.3999985/1‑94 (MQ=60)

      GGCGAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTC                                                                                        >  SRR4302540.7846974/1‑94 (MQ=60)

       GCGAGTCACATTGAGAACTTGCAGCCTGCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCC                                                                                       <  SRR4302540.768526/94‑1 (MQ=60)

       GCGAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCC                                                                                       <  SRR4302540.768527/94‑1 (MQ=60)

       GCGAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCC                                                                                       <  SRR4302540.9628013/94‑1 (MQ=60)

          AGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGG                                                                                    >  SRR4302540.5111827/1‑94 (MQ=60)

           GTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGT                                                                                   >  SRR4302540.8779574/1‑94 (MQ=60)

           GTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGT                                                                                   >  SRR4302540.1543670/1‑94 (MQ=60)

           GTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGT                                                                                   <  SRR4302540.2303559/94‑1 (MQ=60)

            TCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTG                                                                                  <  SRR4302540.7463988/94‑1 (MQ=60)

            TCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTG                                                                                  <  SRR4302540.3035302/94‑1 (MQ=60)

             CACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGC                                                                                 >  SRR4302540.9208840/1‑94 (MQ=60)

             CACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGC                                                                                 >  SRR4302540.5181191/1‑94 (MQ=60)

              ACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACACCACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGCGCA                                                                                >  SRR4302540.7453170/1‑94 (MQ=60)

              ACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCA                                                                                <  SRR4302540.7732019/94‑1 (MQ=60)

              ACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCA                                                                                <  SRR4302540.5647729/94‑1 (MQ=60)

              ACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCA                                                                                >  SRR4302540.5652460/1‑94 (MQ=60)

               CATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTTCAT                                                                               <  SRR4302540.8106776/94‑1 (MQ=60)

               CATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCAT                                                                               <  SRR4302540.2404842/94‑1 (MQ=60)

               CATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCAT                                                                               <  SRR4302540.5804842/94‑1 (MQ=60)

                ATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATG                                                                              >  SRR4302540.3202177/1‑94 (MQ=60)

                ATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATG                                                                              <  SRR4302540.9378528/94‑1 (MQ=60)

                 TTGACAACTATCAGCCTCCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGT                                                                             <  SRR4302540.9094482/94‑1 (MQ=60)

                 TTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGT                                                                             <  SRR4302540.5197296/94‑1 (MQ=60)

                  TGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTT                                                                            <  SRR4302540.2367512/94‑1 (MQ=60)

                  TGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTT                                                                            <  SRR4302540.8316850/94‑1 (MQ=60)

                  TGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTT                                                                            <  SRR4302540.545065/94‑1 (MQ=60)

                   GACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTT                                                                           <  SRR4302540.5946086/94‑1 (MQ=60)

                   GACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTT                                                                           <  SRR4302540.6569538/94‑1 (MQ=60)

                   GACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTT                                                                           >  SRR4302540.7788440/1‑94 (MQ=60)

                   GACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTT                                                                           <  SRR4302540.738310/94‑1 (MQ=60)

                    ACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTT                                                                          <  SRR4302540.6793219/94‑1 (MQ=60)

                     CAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTC                                                                         >  SRR4302540.6373612/1‑94 (MQ=60)

                      AACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCC                                                                        >  SRR4302540.7943668/1‑94 (MQ=60)

                      AACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCA                                                                        >  SRR4302540.1462062/1‑94 (MQ=60)

                       ACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCAC                                                                       >  SRR4302540.1293627/1‑94 (MQ=60)

                        CTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACT                                                                      >  SRR4302540.484860/1‑94 (MQ=60)

                        CTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACT                                                                      >  SRR4302540.3467348/1‑94 (MQ=60)

                        CTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACT                                                                      >  SRR4302540.3467349/1‑94 (MQ=60)

                         TATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTT                                                                     <  SRR4302540.3381626/94‑1 (MQ=60)

                         TATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTT                                                                     <  SRR4302540.7248548/94‑1 (MQ=60)

                         TATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTT                                                                     <  SRR4302540.3382538/94‑1 (MQ=60)

                         TATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTT                                                                     >  SRR4302540.9920766/1‑94 (MQ=60)

                          ATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTG                                                                    >  SRR4302540.4093409/1‑94 (MQ=60)

                          ATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTG                                                                    <  SRR4302540.7911862/94‑1 (MQ=60)

                          ATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTG                                                                    <  SRR4302540.7911860/94‑1 (MQ=60)

                           TCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGT                                                                   <  SRR4302540.8201546/94‑1 (MQ=60)

                            CAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTC                                                                  <  SRR4302540.1412698/94‑1 (MQ=60)

                            CAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTC                                                                  <  SRR4302540.1412697/94‑1 (MQ=60)

                            CAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTC                                                                  <  SRR4302540.4920150/94‑1 (MQ=60)

                             AGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCG                                                                 <  SRR4302540.5106816/94‑1 (MQ=60)

                              GCCACCTGAACAGAGTGCGTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGG                                                                <  SRR4302540.8795133/94‑1 (MQ=60)

                                CACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGAT                                                              >  SRR4302540.6556261/1‑94 (MQ=60)

                                CACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGAT                                                              <  SRR4302540.5652162/94‑1 (MQ=60)

                                CACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGAT                                                              <  SRR4302540.9567785/94‑1 (MQ=60)

                                CACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGAT                                                              <  SRR4302540.8670015/94‑1 (MQ=60)

                                 CCCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATA                                                             <  SRR4302540.224924/94‑1 (MQ=60)

                                 ACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATA                                                             >  SRR4302540.8244631/1‑94 (MQ=60)

                                 ACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATA                                                             <  SRR4302540.6683437/94‑1 (MQ=60)

                                 ACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATA                                                             <  SRR4302540.6683439/94‑1 (MQ=60)

                                  CCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATAT                                                            >  SRR4302540.3238520/1‑94 (MQ=60)

                                  CCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATAT                                                            <  SRR4302540.8633622/94‑1 (MQ=60)

                                  CCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATAT                                                            <  SRR4302540.1456174/94‑1 (MQ=60)

                                  CCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATAT                                                            <  SRR4302540.2846234/94‑1 (MQ=60)

                                  CCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATAT                                                            >  SRR4302540.8867820/1‑94 (MQ=60)

                                   CTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATT                                                           <  SRR4302540.8298307/94‑1 (MQ=60)

                                   CTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATT                                                           <  SRR4302540.2296694/94‑1 (MQ=60)

                                    CGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCAGGTTTTCACTTGTCGGATATTA                                                          <  SRR4302540.1505617/94‑1 (MQ=60)

                                     GAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAA                                                         <  SRR4302540.6838191/94‑1 (MQ=60)

                                     GAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAA                                                         <  SRR4302540.10146847/94‑1 (MQ=60)

                                     GAACAGAGTGCTGCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAA                                                         <  SRR4302540.9737113/94‑1 (MQ=60)

                                      AACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAA                                                        <  SRR4302540.2224099/94‑1 (MQ=60)

                                      AACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAA                                                        <  SRR4302540.1101339/94‑1 (MQ=60)

                                       ACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAAC                                                       >  SRR4302540.9300366/1‑94 (MQ=60)

                                       ACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAAC                                                       >  SRR4302540.7598452/1‑94 (MQ=60)

                                       ACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAAC                                                       <  SRR4302540.1117295/94‑1 (MQ=60)

                                       ACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAAC                                                       <  SRR4302540.2741067/94‑1 (MQ=60)

                                       ACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAAC                                                       <  SRR4302540.2741068/94‑1 (MQ=60)

                                        CAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACC                                                      >  SRR4302540.3293281/1‑94 (MQ=60)

                                         AGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCA                                                     <  SRR4302540.5945948/94‑1 (MQ=60)

                                          GAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAG                                                    <  SRR4302540.7968126/94‑1 (MQ=60)

                                           atggcgtgcggtCAACACAAGTAAGCTCTGCTCTTGTGGAGTGACATGCCGCCCGTCCGGGTGCATTTTTTCGCTTGTCGGATATTAAACCAGG                                                   <  SRR4302540.105715/82‑1 (MQ=60)

                                           AGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGG                                                   >  SRR4302540.5534912/1‑94 (MQ=60)

                                           AGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGG                                                   >  SRR4302540.5534913/1‑94 (MQ=60)

                                              GCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAAT                                                >  SRR4302540.3103665/1‑94 (MQ=60)

                                              GCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTGTTCACTTGTCGGATATTAAACCAGGAAT                                                >  SRR4302540.6051237/1‑94 (MQ=60)

                                               CTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATT                                               >  SRR4302540.114456/1‑94 (MQ=60)

                                               CTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATT                                               >  SRR4302540.1004230/1‑94 (MQ=60)

                                                TTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTT                                              <  SRR4302540.6174770/94‑1 (MQ=60)

                                                TTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTT                                              <  SRR4302540.1413792/94‑1 (MQ=60)

                                                TTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTT                                              <  SRR4302540.4537205/94‑1 (MQ=60)

                                                 TCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTA                                             >  SRR4302540.5620614/1‑94 (MQ=60)

                                                  CGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTAT                                            <  SRR4302540.3327319/94‑1 (MQ=60)

                                                   GGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATT                                           >  SRR4302540.2532106/1‑94 (MQ=60)

                                                   GGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATT                                           >  SRR4302540.5498447/1‑94 (MQ=60)

                                                   GGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATT                                           <  SRR4302540.2103219/94‑1 (MQ=60)

                                                   GGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATT                                           >  SRR4302540.8558726/1‑94 (MQ=60)

                                                   GGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATT                                           <  SRR4302540.2103217/94‑1 (MQ=60)

                                                   GGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATT                                           >  SRR4302540.7216546/1‑94 (MQ=60)

                                                   GGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATT                                           >  SRR4302540.5409752/1‑94 (MQ=60)

                                                    GTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTA                                          >  SRR4302540.4986034/1‑94 (MQ=60)

                                                    GTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTA                                          >  SRR4302540.8763795/1‑94 (MQ=60)

                                                    GTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGAGCATGTTTTCACTTGTCGGATATTACACCAGGACTTTATTA                                          >  SRR4302540.8763796/1‑94 (MQ=60)

                                                     TACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTAT                                         <  SRR4302540.8984944/94‑1 (MQ=60)

                                                      ACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAATCCAGGAATTTATTATC                                        <  SRR4302540.6783314/94‑1 (MQ=60)

                                                      ACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATC                                        >  SRR4302540.46904/1‑94 (MQ=60)

                                                       CAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCT                                       >  SRR4302540.742223/1‑94 (MQ=60)

                                                       CAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCT                                       >  SRR4302540.4813493/1‑94 (MQ=60)

                                                        AACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTT                                      <  SRR4302540.7295038/94‑1 (MQ=60)

                                                        AACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTT                                      <  SRR4302540.9126095/94‑1 (MQ=60)

                                                          CACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGT                                    <  SRR4302540.1299492/94‑1 (MQ=60)

                                                           ACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTT                                   >  SRR4302540.1512647/1‑94 (MQ=60)

                                                           ACAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTT                                   <  SRR4302540.54884/94‑1 (MQ=60)

                                                            CAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTC                                  >  SRR4302540.8499464/1‑94 (MQ=60)

                                                            CAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTC                                  <  SRR4302540.3790925/94‑1 (MQ=60)

                                                            CAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTC                                  >  SRR4302540.4711624/1‑94 (MQ=60)

                                                            CAAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGCCGGATATTAAACCAGGAATTTATTATCTTGTTC                                  <  SRR4302540.9445110/94‑1 (MQ=60)

                                                             AAGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCG                                 <  SRR4302540.8266445/94‑1 (MQ=60)

                                                             AAGTAAGCTCTGCACTTGCGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCG                                 <  SRR4302540.2247351/94‑1 (MQ=60)

                                                              AGTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGA                                <  SRR4302540.5086981/94‑1 (MQ=60)

                                                               GTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGAT                               <  SRR4302540.2548129/94‑1 (MQ=60)

                                                               GTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGAT                               <  SRR4302540.2548130/94‑1 (MQ=60)

                                                               GTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGAT                               >  SRR4302540.9787676/1‑94 (MQ=60)

                                                               GTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGAT                               <  SRR4302540.6485477/94‑1 (MQ=60)

                                                               GTAAGCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGAT                               <  SRR4302540.4347017/94‑1 (MQ=60)

                                                                   GCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTG                           <  SRR4302540.9366536/94‑1 (MQ=60)

                                                                   GCTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTG                           <  SRR4302540.8056518/94‑1 (MQ=60)

                                                                    CTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGT                          >  SRR4302540.9698366/1‑94 (MQ=60)

                                                                    CTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGT                          >  SRR4302540.8668144/1‑94 (MQ=60)

                                                                    CTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGT                          <  SRR4302540.9959131/94‑1 (MQ=60)

                                                                    CTCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGT                          <  SRR4302540.5861216/94‑1 (MQ=60)

                                                                     TCTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTT                         >  SRR4302540.9275362/1‑94 (MQ=60)

                                                                      CTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTG                        <  SRR4302540.3737122/94‑1 (MQ=60)

                                                                      CTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTG                        <  SRR4302540.6867483/94‑1 (MQ=60)

                                                                      CTGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTG                        >  SRR4302540.9851214/1‑94 (MQ=60)

                                                                       TGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGG                       >  SRR4302540.3500076/1‑94 (MQ=60)

                                                                       TGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGG                       <  SRR4302540.4856562/94‑1 (MQ=60)

                                                                       TGCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGG                       >  SRR4302540.7974565/1‑94 (MQ=60)

                                                                        GCACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGT                      <  SRR4302540.6079541/94‑1 (MQ=60)

                                                                         CACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTG                     <  SRR4302540.8317209/94‑1 (MQ=60)

                                                                         CACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTG                     <  SRR4302540.5057737/94‑1 (MQ=60)

                                                                         CACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTG                     <  SRR4302540.5057731/94‑1 (MQ=60)

                                                                         CACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTG                     <  SRR4302540.7613062/94‑1 (MQ=60)

                                                                          ACTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGA                    <  SRR4302540.6560568/94‑1 (MQ=60)

                                                                          ACTTGGGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGA                    <  SRR4302540.4170289/94‑1 (MQ=60)

                                                                           CTTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGAT                   >  SRR4302540.5355423/1‑94 (MQ=60)

                                                                            TTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATT                  >  SRR4302540.5513183/1‑94 (MQ=60)

                                                                            TTGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATT                  <  SRR4302540.426502/94‑1 (MQ=60)

                                                                             TGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTG                 <  SRR4302540.4645694/94‑1 (MQ=60)

                                                                             TGTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTG                 <  SRR4302540.7185711/94‑1 (MQ=60)

                                                                              GTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGT                >  SRR4302540.9108985/1‑94 (MQ=60)

                                                                              GTGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGT                <  SRR4302540.9773541/94‑1 (MQ=60)

                                                                               TGGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTC               <  SRR4302540.8552221/94‑1 (MQ=60)

                                                                                GGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTCA              >  SRR4302540.4851638/1‑94 (MQ=60)

                                                                                GGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTCA              >  SRR4302540.5372032/1‑94 (MQ=60)

                                                                                GGAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTCA              <  SRR4302540.7510024/94‑1 (MQ=60)

                                                                                 GAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTCAG             <  SRR4302540.9838699/94‑1 (MQ=60)

                                                                                 GAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTCAG             >  SRR4302540.7285280/1‑94 (MQ=60)

                                                                                 GAGCGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTCAG             <  SRR4302540.619692/94‑1 (MQ=60)

                                                                                    CGACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTCAGGGA          <  SRR4302540.7604809/94‑1 (MQ=60)

                                                                                     GACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTCAGGGAT         >  SRR4302540.2905415/1‑94 (MQ=60)

                                                                                     GACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTCAGGGAT         >  SRR4302540.2112919/1‑94 (MQ=60)

                                                                                     GACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTCAGGGAT         >  SRR4302540.628845/1‑94 (MQ=60)

                                                                                     GACATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTCAGGGAT         <  SRR4302540.1496666/94‑1 (MQ=60)

                                                                                        ATGCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTCATGGATAGT      >  SRR4302540.4370131/1‑94 (MQ=60)

                                                                                          GCCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTCAGGGATAGTAA    <  SRR4302540.5520125/94‑1 (MQ=60)

                                                                                           CCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTCAGGGATAGTAAA   >  SRR4302540.219020/1‑94 (MQ=60)

                                                                                           CCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTCAGGGATAGTAAA   <  SRR4302540.6313769/94‑1 (MQ=60)

                                                                                           CCGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTCAGGGATAGTAAA   <  SRR4302540.6382230/94‑1 (MQ=60)

                                                                                           CCGCCCGTCCGGGTGCATGTTTTCACTTGTCAGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTCAGGGATAGTAAA   <  SRR4302540.6313475/94‑1 (MQ=60)

                                                                                            CGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTCAGGGATAGTAAAG  <  SRR4302540.1282304/94‑1 (MQ=60)

                                                                                            CGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTCAGGGATAGTAAAG  >  SRR4302540.1525349/1‑94 (MQ=60)

TGGCGTGGCGAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTCAGGGATAGTAAAG  >  NC_000913/1702634‑1702819

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`