Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1548 |
369.5 |
20095359 |
96.9% |
19472402 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,705,521 |
C→T |
V193V (GTC→GTT) |
b1629 → |
putative membrane protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,705,521 | 0 | C | T | 99.5%
| 773.2
/ ‑5.7
| 219 | V193V (GTC→GTT) | b1629 | putative membrane protein |
| Reads supporting (aligned to +/- strand): ref base C (0/1); new base T (124/94); total (124/95) |
| Fisher's exact test for biased strand distribution p-value = 4.34e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.69e-01 |
Only 100 of 225 total aligned reads displayed.
TAAGATTGAAACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTCGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTTCCAT > NC_000913/1705431‑1705610
|
tAAGATTGAAACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGt > 1:7996801/1‑93 (MQ=255)
aaGATTGAAACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTa < 2:2221282/93‑1 (MQ=255)
aGATTGAAACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTag > 1:8393891/1‑93 (MQ=255)
gATTGAAACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTaga > 1:7673141/1‑93 (MQ=255)
gATTGAAACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTaga < 1:5229688/93‑1 (MQ=255)
aTTGAAACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTagag > 1:8034684/1‑93 (MQ=255)
ttGAAACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAgg < 2:7538012/93‑1 (MQ=255)
tggAAACGTTGATTATCACCGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAgg < 2:3714311/91‑1 (MQ=255)
tGAAACTTTGATTATCACCGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAggg < 2:7182925/93‑1 (MQ=255)
tGAAACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAggg > 1:9348458/1‑93 (MQ=255)
aaaCGTTGATTATCAACGCGGCTGGGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTa < 2:2688273/93‑1 (MQ=255)
aCGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTAtt < 1:2357848/93‑1 (MQ=255)
aCGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGCCTCAGGTTGTAGGGGGtttt > 1:7022652/1‑93 (MQ=255)
ttGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGc > 2:3349620/1‑93 (MQ=255)
ttATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTc > 2:9116537/1‑93 (MQ=255)
tATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCt > 2:1756802/1‑93 (MQ=255)
tATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCt < 1:9799091/93‑1 (MQ=255)
tATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCt > 2:9381082/1‑93 (MQ=255)
aaCGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTgcg > 2:1226397/1‑93 (MQ=255)
cgcgGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCa < 2:3897583/93‑1 (MQ=255)
cgcgGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCa > 1:8736975/1‑93 (MQ=255)
gcgGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCat < 2:7131710/93‑1 (MQ=255)
gCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGGGGGTATTCGCATTCTTGCGCATAtt > 2:7914908/1‑93 (MQ=255)
gCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATAtt > 1:9536809/1‑93 (MQ=255)
gCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATAtt > 1:8552534/1‑93 (MQ=255)
cTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTc < 2:9518869/93‑1 (MQ=255)
gAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTg < 1:9959486/93‑1 (MQ=255)
gAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTg > 2:5009799/1‑93 (MQ=255)
gAGTGCGAGCCGTACATTACCGCCGATCACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTg > 2:4340700/1‑93 (MQ=255)
gTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCa < 1:5069099/93‑1 (MQ=255)
tGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAg < 1:4295924/93‑1 (MQ=255)
gCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGCTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGc > 1:1315557/1‑93 (MQ=255)
gCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCAcg < 1:6329466/93‑1 (MQ=255)
gCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCAcg < 1:1002262/93‑1 (MQ=255)
gCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCAcg < 1:9114756/93‑1 (MQ=255)
cGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCAcgcg < 2:4050419/93‑1 (MQ=255)
cGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCAcgcg > 1:3072056/1‑93 (MQ=255)
gTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGa > 2:810791/1‑93 (MQ=255)
gTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGGATTCGCATTCTTGCGCATATTCTGCAGCCACGCGa > 2:279337/1‑93 (MQ=255)
aCATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGaaa > 2:6386340/1‑93 (MQ=255)
aCATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGaaa > 2:7317831/1‑93 (MQ=255)
cATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCCGCCACGCGAAAt > 2:5833331/1‑93 (MQ=255)
aTTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAAtt < 2:1362992/93‑1 (MQ=255)
aTTACCGCCGATGACCGTTTGAGGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAAtt < 1:5384919/93‑1 (MQ=255)
aCCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCtt < 2:656149/93‑1 (MQ=255)
ccgccgATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTa < 2:3200614/93‑1 (MQ=255)
cgccgATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTAt < 1:2755668/93‑1 (MQ=255)
gccgATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATc < 1:6885616/93‑1 (MQ=255)
ccgATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCg < 1:5954382/93‑1 (MQ=255)
ccgATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCg > 1:6004504/1‑93 (MQ=255)
ccgATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCg < 2:863126/93‑1 (MQ=255)
gATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGTGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACTCGAAATTCTTATCGGc > 1:1533068/1‑93 (MQ=255)
gATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGACACGCGAAATTCTTATccga > 2:2920977/1‑90 (MQ=255)
gATGACCGTTTGATGCAGGATTGCGCGGCTCAGGGTGTAGAGGGAATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGc > 1:1358427/1‑93 (MQ=255)
aTGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCa < 2:5086350/93‑1 (MQ=255)
aTGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCa > 2:3524837/1‑93 (MQ=255)
aTGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCa > 1:5356457/1‑93 (MQ=255)
aTGACCGTGTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCa < 1:5643944/93‑1 (MQ=255)
tGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCAt > 1:2712345/1‑93 (MQ=255)
tGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCAt > 1:2209826/1‑93 (MQ=255)
tGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCAt > 1:3810879/1‑93 (MQ=255)
tGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCAt > 2:8549984/1‑93 (MQ=255)
gACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCAtt < 1:7469989/93‑1 (MQ=255)
aCCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTg > 2:4939859/1‑93 (MQ=255)
aCCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTg > 2:1793187/1‑93 (MQ=255)
aCCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTg < 1:8125934/93‑1 (MQ=255)
ccGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGa < 2:5039448/93‑1 (MQ=255)
ccGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGa > 1:6495012/1‑93 (MQ=255)
cGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGaa > 2:6255092/1‑93 (MQ=255)
cGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGaa > 2:9615559/1‑93 (MQ=255)
gTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCGTATTCTGCAGCCACGCCAAATTCTTATCGGCATTGAAg > 1:4800249/1‑93 (MQ=255)
gTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAg > 1:26310/1‑93 (MQ=255)
tttGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGa > 1:2229960/1‑93 (MQ=255)
ttGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGAt < 1:6268101/93‑1 (MQ=255)
tGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATa < 1:2850454/93‑1 (MQ=255)
gATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTATTATCGGCATTGAAGATaa > 2:5336573/1‑93 (MQ=255)
aTGCAGGATCGCGCGGCTCAGGTTGTAGAGTGTATTCGCATTCTTGCTCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAAc < 1:1932767/93‑1 (MQ=255)
tGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACa > 2:5195297/1‑93 (MQ=255)
tGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACa < 1:7315239/93‑1 (MQ=255)
tGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACa > 2:6810299/1‑93 (MQ=255)
tGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACa > 1:314913/1‑93 (MQ=255)
tGCAGGATTGCGCGGCTCAGGTCGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACa < 1:1800296/93‑1 (MQ=255)
gggATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAAc < 2:8171040/92‑1 (MQ=255)
ggATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAAcc < 1:7227154/93‑1 (MQ=255)
ggATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAAcc > 2:5650155/1‑93 (MQ=255)
aTTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGc > 2:2487217/1‑93 (MQ=255)
ttGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCa < 1:8942827/93‑1 (MQ=255)
tGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAg > 1:4821036/1‑93 (MQ=255)
gcgcGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAgg < 1:4718044/93‑1 (MQ=255)
gcgcGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAgg > 2:860629/1‑93 (MQ=255)
cgcgGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGc < 1:4359871/93‑1 (MQ=255)
gcgGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCg > 1:6749815/1‑93 (MQ=255)
gcgGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCg > 1:3344279/1‑93 (MQ=255)
gcgGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCg < 2:4548833/93‑1 (MQ=255)
gCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGAtt > 2:6635342/1‑93 (MQ=255)
gCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATAGGCATTGAAGATAACAAACCGCAGGCGAtt < 2:2009577/93‑1 (MQ=255)
cTCAGGGTGTAGAGGGGATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGAttt > 2:1610206/1‑93 (MQ=255)
tCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTTc > 2:8033380/1‑93 (MQ=255)
ggTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTTCCAt < 1:4188845/93‑1 (MQ=255)
ggTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTTCCAt < 1:7160940/93‑1 (MQ=255)
|
TAAGATTGAAACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTCGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTTCCAT > NC_000913/1705431‑1705610
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AGATAAGATTGAAACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTCGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTTCCATGCT > NC_000913/1705428‑1705613
|
AGATAAGATTGAAACGTTGATTATCACCGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTT < SRR4302540.2830960/94‑1 (MQ=60)
AAATAAGATTGAAACGTTGATTATCAACCCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTT < SRR4302540.7417176/94‑1 (MQ=60)
GATAAGATTGAAACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTG > SRR4302540.6648206/1‑94 (MQ=60)
GATAAGATTGAAACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTG < SRR4302540.2663510/94‑1 (MQ=60)
ATAAGATTGAAACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGT > SRR4302540.8089887/1‑94 (MQ=60)
AAGATTGAAACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAG > SRR4302540.8491299/1‑94 (MQ=60)
AGATTGAAACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGA > SRR4302540.7962828/1‑94 (MQ=60)
AGATTGAAACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGA > SRR4302540.7759762/1‑94 (MQ=60)
GATTGAAACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACGGCCGATGCCCGTTTGATGCAGGATTGCGCGGCTCAGGCTGTAGAG > SRR4302540.283293/1‑94 (MQ=60)
GATTGAAACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCCGGTTGTAGAG > SRR4302540.283292/1‑94 (MQ=60)
GATTGAAACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAG < SRR4302540.5286721/94‑1 (MQ=60)
GATTGAAACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAG > SRR4302540.8128077/1‑94 (MQ=60)
GATTGAAACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAG < SRR4302540.3081166/94‑1 (MQ=60)
GATGGAAACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAG < SRR4302540.9129399/94‑1 (MQ=60)
ATTGAAACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGG < SRR4302540.4611766/94‑1 (MQ=60)
ATGGAAACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGG < SRR4302540.1832778/94‑1 (MQ=60)
TTGAAACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGG > SRR4302540.9459813/1‑94 (MQ=60)
TTGAAACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGG > SRR4302540.2256095/1‑94 (MQ=60)
TGAAACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGT > SRR4302540.6023404/1‑94 (MQ=60)
TGAAACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGT > SRR4302540.10074911/1‑94 (MQ=60)
GAAACTGTGATTATCAACGCGGGTGAGGGCCGGCCGGAAATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTA < SRR4302540.8689003/94‑1 (MQ=60)
AACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATT > SRR4302540.6558851/1‑94 (MQ=60)
AACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGCCTCAGGTTGTAGGGGGTTTT > SRR4302540.7100656/1‑94 (MQ=60)
ACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTC < SRR4302540.2383245/94‑1 (MQ=60)
CGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCG > SRR4302540.1771045/1‑94 (MQ=60)
TTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCT > SRR4302540.6272506/1‑94 (MQ=60)
tatcacgcCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTT < SRR4302540.6064202/86‑1 (MQ=60)
TATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTT > SRR4302540.8095007/1‑94 (MQ=60)
TATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTT < SRR4302540.9913835/94‑1 (MQ=60)
CAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCG > SRR4302540.7104304/1‑94 (MQ=60)
ACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCA > SRR4302540.8838415/1‑94 (MQ=60)
CGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCAT < SRR4302540.5237891/94‑1 (MQ=60)
CGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATAT > SRR4302540.8487413/1‑94 (MQ=60)
CGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATAT > SRR4302540.443234/1‑94 (MQ=60)
CGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATAT > SRR4302540.6896629/1‑94 (MQ=60)
GGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATT > SRR4302540.8651879/1‑94 (MQ=60)
GGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATT > SRR4302540.9649688/1‑94 (MQ=60)
GCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTC < SRR4302540.2501704/94‑1 (MQ=60)
CTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCT < SRR4302540.6434735/94‑1 (MQ=60)
GAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGC < SRR4302540.10075710/94‑1 (MQ=60)
AGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCA > SRR4302540.7638707/1‑94 (MQ=60)
GTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAG < SRR4302540.6387004/94‑1 (MQ=60)
GTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAG < SRR4302540.5123907/94‑1 (MQ=60)
GTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGGTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAG > SRR4302540.1339925/1‑94 (MQ=60)
TGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGC < SRR4302540.4342669/94‑1 (MQ=60)
TGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGCTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGC > SRR4302540.1329239/1‑94 (MQ=60)
CGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCA > SRR4302540.3201887/1‑94 (MQ=60)
AGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACG > SRR4302540.7377822/1‑94 (MQ=60)
AGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACG > SRR4302540.4360833/1‑94 (MQ=60)
AGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACG > SRR4302540.9061444/1‑94 (MQ=60)
AGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGGATTCGCATTCTTGCGCATATTCTGCAGCCACG > SRR4302540.1689859/1‑94 (MQ=60)
GCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGC < SRR4302540.6399949/94‑1 (MQ=60)
GCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGC < SRR4302540.9224308/94‑1 (MQ=60)
GCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGC < SRR4302540.9975826/94‑1 (MQ=60)
GCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGC < SRR4302540.1012443/94‑1 (MQ=60)
CCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCG > SRR4302540.3105765/1‑94 (MQ=60)
CCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGAGCGGCTCAGGTTGTAGAGGGTATTCGCA‑TCTTGCGCATCTTCTGCAGCCACGCGA > SRR4302540.4292729/1‑94 (MQ=60)
CGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGA > SRR4302540.2770283/1‑94 (MQ=60)
GTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAA > SRR4302540.2310676/1‑94 (MQ=60)
CATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATT > SRR4302540.7434295/1‑94 (MQ=60)
ATTACCGCCGATGACCGTTTGAGGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTC < SRR4302540.5444148/94‑1 (MQ=60)
TTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCT < SRR4302540.6713956/94‑1 (MQ=60)
CCGCCGATGCCCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAACTCTTAT < SRR4302540.2677132/94‑1 (MQ=60)
CGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATC < SRR4302540.2785451/94‑1 (MQ=60)
GCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCG < SRR4302540.6961952/94‑1 (MQ=60)
GCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCG > SRR4302540.6071071/1‑94 (MQ=60)
CCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGG < SRR4302540.6020236/94‑1 (MQ=60)
CGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGTGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACTCGAAATTCTTATCGGC > SRR4302540.1550039/1‑94 (MQ=60)
CGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGAAGCCACGCGAAATTCTTATCGGC < SRR4302540.3991451/94‑1 (MQ=60)
CGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGGTGTAGAGGGAATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGC > SRR4302540.1372750/1‑94 (MQ=60)
GATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCA > SRR4302540.221211/1‑94 (MQ=60)
GATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCA < SRR4302540.8216120/94‑1 (MQ=60)
GATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCA > SRR4302540.5415282/1‑94 (MQ=60)
ATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCAT > SRR4302540.2741596/1‑94 (MQ=60)
ATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCAT > SRR4302540.2233694/1‑94 (MQ=60)
ATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCAT > SRR4302540.3852377/1‑94 (MQ=60)
ATGACCGTGTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCAT < SRR4302540.5706059/94‑1 (MQ=60)
GACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTG < SRR4302540.7553329/94‑1 (MQ=60)
ACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGA > SRR4302540.6567241/1‑94 (MQ=60)
ACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGA < SRR4302540.8220249/94‑1 (MQ=60)
CCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAA > SRR4302540.8970941/1‑94 (MQ=60)
CGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCGTATTCTGCAGCCACGCCAAATTCTTATCGGCATTGAAG > SRR4302540.4851620/1‑94 (MQ=60)
CGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAG > SRR4302540.4851621/1‑94 (MQ=60)
CGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAG > SRR4302540.26595/1‑94 (MQ=60)
GTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGA > SRR4302540.2253980/1‑94 (MQ=60)
GTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGGATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGA > SRR4302540.7302476/1‑94 (MQ=60)
TTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGAT > SRR4302540.5436230/1‑94 (MQ=60)
TTTG‑TGCAGGATTGCGCGGCTCAGGTTGTAGAGGATATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATA < SRR4302540.5794511/94‑1 (MQ=60)
TTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATA < SRR4302540.6337830/94‑1 (MQ=60)
TGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAA < SRR4302540.2881333/94‑1 (MQ=60)
GATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAAC > SRR4302540.5381152/1‑94 (MQ=60)
GATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAAC > SRR4302540.9593165/1‑94 (MQ=60)
ATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACA > SRR4302540.318048/1‑94 (MQ=60)
ATGCAGGATCGCGCGGCTCAGGTTGTAGAGTGTATTCGCATTCTTGCTCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACA < SRR4302540.1953830/94‑1 (MQ=60)
TGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAA < SRR4302540.7396926/94‑1 (MQ=60)
TGCAGGATTGCGCGGCTCAGGTCGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAA < SRR4302540.1819891/94‑1 (MQ=60)
AGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACC > SRR4302540.7030145/1‑94 (MQ=60)
GGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCG < SRR4302540.7307746/94‑1 (MQ=60)
GGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCG > SRR4302540.5206525/1‑94 (MQ=60)
GGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCG < SRR4302540.317490/94‑1 (MQ=60)
ATTGCGCGGCTCAGGTTGTAGAGGGGATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCA > SRR4302540.3827108/1‑94 (MQ=60)
TTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAG > SRR4302540.4872644/1‑94 (MQ=60)
TTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAG < SRR4302540.9047873/94‑1 (MQ=60)
TGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGG > SRR4302540.1456098/1‑94 (MQ=60)
TGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGG < SRR4302540.493396/94‑1 (MQ=60)
GCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGC < SRR4302540.4768447/94‑1 (MQ=60)
GGCGGCTCAAGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCG < SRR4302540.7105793/94‑1 (MQ=60)
CGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCG > SRR4302540.3380972/1‑94 (MQ=60)
CGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCG > SRR4302540.6824391/1‑94 (MQ=60)
CGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCG < SRR4302540.4407285/94‑1 (MQ=60)
CGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCG < SRR4302540.5728984/94‑1 (MQ=60)
GCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGA > SRR4302540.1169483/1‑94 (MQ=60)
GCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTT > SRR4302540.2237826/1‑94 (MQ=60)
GCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTT > SRR4302540.3735343/1‑94 (MQ=60)
CTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTTC < SRR4302540.8460099/94‑1 (MQ=60)
TCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTTCC > SRR4302540.8578044/1‑94 (MQ=60)
AGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAACCCGCAGGCGAGTTCCAT > SRR4302540.7711265/1‑94 (MQ=60)
AGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTTCCAT < SRR4302540.4841751/94‑1 (MQ=60)
AGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTTCCAT < SRR4302540.9848373/94‑1 (MQ=60)
AGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTTCCAT < SRR4302540.9367686/94‑1 (MQ=60)
GGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTTCCATG < SRR4302540.4234389/94‑1 (MQ=60)
GGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTTCCATG < SRR4302540.7240759/94‑1 (MQ=60)
GGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACACGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTTCCATG < SRR4302540.5505241/94‑1 (MQ=60)
GTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTATTATCGGCATTGAAGATAACAAACCGCAGGCGATTTCCATGC < SRR4302540.5395069/94‑1 (MQ=60)
TTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTTCCATGCT < SRR4302540.2961715/94‑1 (MQ=60)
|
AGATAAGATTGAAACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTCGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTTCCATGCT > NC_000913/1705428‑1705613
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
