Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1548 |
369.5 |
20095359 |
96.9% |
19472402 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,957,451 |
T→C |
L140L (CTA→CTG) |
b1875 ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,957,451 | 0 | T | C | 99.6%
| 846.1
/ NA
| 263 | L140L (CTA→CTG) | b1875 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (120/142); minor base A (1/0); total (121/142) |
| Fisher's exact test for biased strand distribution p-value = 4.60e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 265 total aligned reads displayed.
AGTTGTTTTGCCATCGGTGACCGCCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGTAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCCGGCAGAACGATTTCAATATGTTCCC > NC_000913/1957361‑1957539
|
aGTTGTTTTGCCATCGGTGACCGCCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAg < 1:23312/93‑1 (MQ=255)
gttgttTTGCCATCGGTGACCGCCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAgg < 1:7180271/93‑1 (MQ=255)
tgttTTGCCATCGGTGACCGCCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCt < 2:6757003/93‑1 (MQ=255)
gttTTGCCATCGGTGACCGCCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTg > 1:8314085/1‑93 (MQ=255)
ttttGCCATCGGTGACCGCCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGa < 2:214161/93‑1 (MQ=255)
tttGCCATCGGTGACCGCCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAg > 2:3630887/1‑93 (MQ=255)
ttGCCATCGGTGACCGCCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGt < 2:4917069/93‑1 (MQ=255)
tGCCATCGGTGACCGCCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTc > 1:3810404/1‑93 (MQ=255)
ccATCGGTGACCGCCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCt < 1:8918445/93‑1 (MQ=255)
ccATCGGTGACCGCCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCt < 2:6312136/93‑1 (MQ=255)
ccATCGGTGACCGCCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCt > 2:894205/1‑93 (MQ=255)
cATCGGTGACCGCCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCtt < 1:4090202/93‑1 (MQ=255)
cATCGGTGACCGCCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCtt > 2:9716348/1‑93 (MQ=255)
aTCGGTGACCGCCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTtc < 2:1382166/93‑1 (MQ=255)
aTCGGTGACCGCCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTtc > 1:6390439/1‑93 (MQ=255)
tCGGTGACCGCCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTtca > 1:6086662/1‑93 (MQ=255)
cGGTGACCGCCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTtcat < 1:4745466/93‑1 (MQ=255)
aCCGCCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGaa < 1:1006264/93‑1 (MQ=255)
ccGCCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGaaa < 2:3032745/93‑1 (MQ=255)
ccGCCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGaaa < 2:8513287/93‑1 (MQ=255)
cGCCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAg > 2:8103883/1‑93 (MQ=255)
gCCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGCAAGc > 2:6276381/1‑93 (MQ=255)
gCCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGc > 1:3681532/1‑93 (MQ=255)
gCCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGc > 1:7576841/1‑93 (MQ=255)
ccAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCa < 2:9624732/93‑1 (MQ=255)
cAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCaa < 1:9915886/93‑1 (MQ=255)
cAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCaa < 2:3024701/93‑1 (MQ=255)
cAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCaa < 1:7496310/93‑1 (MQ=255)
cAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCaa > 1:7905084/1‑93 (MQ=255)
cAGCGTCGGATTCGGT‑ATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAAt < 1:6705720/93‑1 (MQ=255)
aGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAAt < 2:3270828/93‑1 (MQ=255)
aGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAAt < 1:4485465/93‑1 (MQ=255)
aGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAAt > 1:7863605/1‑93 (MQ=255)
gCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATg > 2:2820069/1‑93 (MQ=255)
gTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGcc < 1:5664481/93‑1 (MQ=255)
gTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGCCCTTCATCAGAAAGCAATGcc < 1:1777716/93‑1 (MQ=255)
tCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCa < 2:6564108/93‑1 (MQ=255)
cGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAg < 1:1259543/93‑1 (MQ=255)
cGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAg < 1:4152711/93‑1 (MQ=255)
ggATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAgc < 2:2081932/93‑1 (MQ=255)
cgATTCGGTAAGCGCTCATGCTCGCCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAgc < 2:3583506/92‑1 (MQ=255)
gATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAgcg > 1:3300009/1‑93 (MQ=255)
gATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAgcg > 1:4796148/1‑93 (MQ=255)
aTTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAgcgc < 2:4090857/93‑1 (MQ=255)
aTTCGGTAATCGCTCATGCTCACCTTTTGGCGAACCGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAgcgc > 1:8980423/1‑93 (MQ=255)
tCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCAc < 1:3091286/93‑1 (MQ=255)
tCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCAc < 2:7216070/93‑1 (MQ=255)
cGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACg > 2:1652897/1‑93 (MQ=255)
ggTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACgg > 2:7846082/1‑93 (MQ=255)
ggTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACgg > 2:744602/1‑93 (MQ=255)
tAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGc > 1:4304596/1‑93 (MQ=255)
tAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGc > 2:5623369/1‑93 (MQ=255)
aaTCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCa > 1:6837606/1‑93 (MQ=255)
aTCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCAt < 2:211058/93‑1 (MQ=255)
tCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCAtt > 1:3953415/1‑93 (MQ=255)
cTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAg > 2:4245628/1‑93 (MQ=255)
cTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAg > 1:1519464/1‑93 (MQ=255)
cTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAg > 1:6142665/1‑93 (MQ=255)
tCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGc < 1:265684/93‑1 (MQ=255)
tGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGtt > 2:4492085/1‑93 (MQ=255)
tGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGtt > 1:7818547/1‑93 (MQ=255)
gCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGttt > 2:5975370/1‑93 (MQ=255)
gCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGttt > 1:627920/1‑93 (MQ=255)
aCCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTgg < 2:2411578/93‑1 (MQ=255)
ctgttGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGAt < 1:9284165/90‑1 (MQ=255)
cTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGAt > 2:1898319/1‑93 (MQ=255)
cTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGAt < 1:8499208/93‑1 (MQ=255)
tGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCAcc < 2:8604125/93‑1 (MQ=255)
ggCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCAccc < 2:3955660/93‑1 (MQ=255)
ggCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCAccc < 1:2537853/93‑1 (MQ=255)
gAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCCGGc < 2:3535934/93‑1 (MQ=255)
gAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCCGGc < 1:5877184/93‑1 (MQ=255)
gAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCCGGc > 2:4969188/1‑93 (MQ=255)
aaCTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCCGGCa > 2:6455548/1‑93 (MQ=255)
aaCTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCCGGCa > 2:5383/1‑93 (MQ=255)
aaCTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCCGGCa < 1:9168126/93‑1 (MQ=255)
tGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCCGGCAGaa < 2:4291335/93‑1 (MQ=255)
tGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATAACCCGGCAGaa > 1:2782521/1‑93 (MQ=255)
ttttCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCCGGCAGAACGa < 2:7629366/93‑1 (MQ=255)
tttCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCCGGCAGAACGAt < 2:9006909/93‑1 (MQ=255)
tttCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCCGGCAGAACGAt < 2:9380157/93‑1 (MQ=255)
ttCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCCGGCAGAACGAtt > 1:442660/1‑93 (MQ=255)
tCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCCGGCAGAACGAttt < 2:9809562/93‑1 (MQ=255)
cccTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCCGGCAGAACGATTTc < 2:1087844/91‑1 (MQ=255)
aCTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCGGGCAGAACGATTTCa > 1:5489958/1‑93 (MQ=255)
cTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCCGGCAGAACGATTTCaa > 2:3988609/1‑93 (MQ=255)
cTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCCGGCAGAACGATTTCaa > 1:1178689/1‑93 (MQ=255)
cTGAGAACCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCCGGCAGAACGATTTCaa < 1:8745274/93‑1 (MQ=255)
tGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCATCGTTTCTGGATCACCCGGCAGAACGATTTCAat > 1:9701978/1‑93 (MQ=255)
tGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCCGGCAGAACGATTTCAat > 1:710062/1‑93 (MQ=255)
tGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCCGGCAGAACGATTTCAat > 2:1728429/1‑93 (MQ=255)
gagaTCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCCGGCAGAACGATTTCAata > 1:5204283/1‑93 (MQ=255)
agaTCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCCGGCAGAACGATTTCAatat < 2:5587899/93‑1 (MQ=255)
agaTCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCCGGCAGAACGATTTCAatat < 2:8643586/93‑1 (MQ=255)
tCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCCGGCAGAACGATTTCAATATGtt > 2:8277166/1‑93 (MQ=255)
tCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCCGGCAGAACGATTTCAATATGtt > 1:7038062/1‑93 (MQ=255)
ccccGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCCGGCAGAACGATTTCAATATGTTc < 1:3141711/93‑1 (MQ=255)
ccGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCCGGCAGAACGATTTCAATATGTTccc < 1:939757/93‑1 (MQ=255)
ccGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCCGGCAGAACGATTTCAATATGTTccc > 1:2010459/1‑93 (MQ=255)
ccGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCCGGCAGAACGATTTCAATATGTTccc < 1:10006200/93‑1 (MQ=255)
|
AGTTGTTTTGCCATCGGTGACCGCCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGTAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCCGGCAGAACGATTTCAATATGTTCCC > NC_000913/1957361‑1957539
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TAGTTGTTTTGCCATCGGTGACCGCCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGTAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCCGGCAGAACGATTTCAATATGTTCCCAACC > NC_000913/1957360‑1957543
|
TAGTTGTTTTGCCATCGGTGACCGCCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAG < SRR4302540.4620014/94‑1 (MQ=60)
AGTTGTTTTGCCATCGGTGACCGCCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGG < SRR4302540.23570/94‑1 (MQ=60)
AGTTGTTTTGCCATCGGTGACCGCCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGG > SRR4302540.9118971/1‑94 (MQ=60)
GTTGTTTTGCCATCGGTGACCGCCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGC < SRR4302540.7260324/94‑1 (MQ=60)
TTGTTTTGCCATCGGTGACCGCCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCT > SRR4302540.5593836/1‑94 (MQ=60)
TTGTTTTGCCATCGGTGACCGCCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCT < SRR4302540.4013872/94‑1 (MQ=60)
TGTTTTGCCATCGGTGACCGCCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTG < SRR4302540.7746476/94‑1 (MQ=60)
TGTTTTGCCATCGGTGACCGCCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTG > SRR4302540.8410597/1‑94 (MQ=60)
GTTTTGCCATCGGTGACCGCCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGA > SRR4302540.5953186/1‑94 (MQ=60)
TTTTGCCATCGGTGACCGCCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAG < SRR4302540.9502967/94‑1 (MQ=60)
TTTTGCCATCGGTGACCGCCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAG < SRR4302540.6421823/94‑1 (MQ=60)
TTTGCCATCGGTGACCGCCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGT < SRR4302540.7096952/94‑1 (MQ=60)
TTGCCATCGGTGACCGCCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTC > SRR4302540.3851900/1‑94 (MQ=60)
TTGCCATCGGTGACCGCCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGAC > SRR4302540.1015750/1‑94 (MQ=60)
TGCCATCGGTGACCGCCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCGGGCAGGCTGAGTCC > SRR4302540.4358198/1‑94 (MQ=60)
CCATCGGTGACCGCCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTT < SRR4302540.1619544/94‑1 (MQ=60)
CCATCGGTGACCGCCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTT < SRR4302540.9021736/94‑1 (MQ=60)
CCATCGGTGACCGCCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTT > SRR4302540.9394795/1‑94 (MQ=60)
CATCGGTGACCGCCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTC < SRR4302540.4134320/94‑1 (MQ=60)
CATCGGTGACCGCCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTC > SRR4302540.6461577/1‑94 (MQ=60)
ATCGGTGACCGCCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCA > SRR4302540.10057558/1‑94 (MQ=60)
ATCGGTGACCGCCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCA > SRR4302540.3522169/1‑94 (MQ=60)
ATCGGTGACCGCCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCA > SRR4302540.6154401/1‑94 (MQ=60)
ATCGGTGACCGCCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCA > SRR4302540.7065558/1‑94 (MQ=60)
TCGGTGACCGCCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCAT < SRR4302540.4057421/94‑1 (MQ=60)
CGGTGACCGCCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATC < SRR4302540.4843261/94‑1 (MQ=60)
CGGTGACCGCCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATC < SRR4302540.4796109/94‑1 (MQ=60)
GGTGACCGCCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCA > SRR4302540.624554/1‑94 (MQ=60)
GTGACCGCCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAG < SRR4302540.7414703/94‑1 (MQ=60)
GTGACCGCCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAG < SRR4302540.6207354/94‑1 (MQ=60)
GACCGCCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAA > SRR4302540.2537214/1‑94 (MQ=60)
GACCGCCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAA > SRR4302540.7960494/1‑94 (MQ=60)
ACCGCCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAA < SRR4302540.1016468/94‑1 (MQ=60)
ACCGCCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAA > SRR4302540.2752199/1‑94 (MQ=60)
ACCGCCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTGTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAA < SRR4302540.7224836/94‑1 (MQ=60)
CCGCCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAG < SRR4302540.3794109/94‑1 (MQ=60)
CGCCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGC > SRR4302540.7661858/1‑94 (MQ=60)
CGCCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGC < SRR4302540.2959231/94‑1 (MQ=60)
CGCCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGC > SRR4302540.1238503/1‑94 (MQ=60)
CGCCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGC > SRR4302540.3721769/1‑94 (MQ=60)
CGCCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGC > SRR4302540.5335928/1‑94 (MQ=60)
CCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAA > SRR4302540.7997275/1‑94 (MQ=60)
CAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAAT < SRR4302540.1504163/94‑1 (MQ=60)
CAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAAT > SRR4302540.7955475/1‑94 (MQ=60)
CAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAAT < SRR4302540.4791295/94‑1 (MQ=60)
CAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAAT > SRR4302540.3223930/1‑94 (MQ=60)
CAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAAT < SRR4302540.7580047/94‑1 (MQ=60)
CAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAAT < SRR4302540.10031694/94‑1 (MQ=60)
CAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGAAGGCTGAGTCCTTCATCAGAAAGCAAT > SRR4302540.7955474/1‑94 (MQ=60)
CAGCGTCGGATTCGGT‑ATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATG < SRR4302540.6779727/94‑1 (MQ=60)
AGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATG < SRR4302540.4534116/94‑1 (MQ=60)
GCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGC > SRR4302540.9910618/1‑94 (MQ=60)
CGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCC < SRR4302540.9899044/94‑1 (MQ=60)
GTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCA > SRR4302540.8992649/1‑94 (MQ=60)
GTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCA < SRR4302540.5726862/94‑1 (MQ=60)
GTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGCCCTTCATCAGAAAGCAATGCCA < SRR4302540.1797019/94‑1 (MQ=60)
CGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGC < SRR4302540.1272463/94‑1 (MQ=60)
CGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGC < SRR4302540.4197689/94‑1 (MQ=60)
CGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGC < SRR4302540.5149207/94‑1 (MQ=60)
GGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCG > SRR4302540.3336133/1‑94 (MQ=60)
GGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCG > SRR4302540.4847469/1‑94 (MQ=60)
GATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGC > SRR4302540.6911551/1‑94 (MQ=60)
GATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACCGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGC > SRR4302540.9087442/1‑94 (MQ=60)
TTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCAC < SRR4302540.7949806/94‑1 (MQ=60)
TCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACG > SRR4302540.7129968/1‑94 (MQ=60)
TCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACG < SRR4302540.2132442/94‑1 (MQ=60)
TCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACG < SRR4302540.3125197/94‑1 (MQ=60)
TCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACG > SRR4302540.8594767/1‑94 (MQ=60)
CGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGG > SRR4302540.1696722/1‑94 (MQ=60)
CGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGG < SRR4302540.3696805/94‑1 (MQ=60)
GTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGC > SRR4302540.4351450/1‑94 (MQ=60)
TAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCA > SRR4302540.7190861/1‑94 (MQ=60)
TAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCA > SRR4302540.2773668/1‑94 (MQ=60)
TAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCA > SRR4302540.6913340/1‑94 (MQ=60)
AATCGCTCATGCTCAACTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCAT < SRR4302540.9068141/94‑1 (MQ=60)
ATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATT > SRR4302540.3996078/1‑94 (MQ=60)
CGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCA < SRR4302540.1819857/94‑1 (MQ=60)
GCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAG > SRR4302540.6211078/1‑94 (MQ=60)
GCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAG < SRR4302540.4631580/94‑1 (MQ=60)
GCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAG > SRR4302540.1536280/1‑94 (MQ=60)
CTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGC > SRR4302540.9310887/1‑94 (MQ=60)
CTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGC < SRR4302540.6285701/94‑1 (MQ=60)
TCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCG < SRR4302540.268293/94‑1 (MQ=60)
CATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGT > SRR4302540.611607/1‑94 (MQ=60)
ATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCCTCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTT > SRR4302540.9779506/1‑94 (MQ=60)
ATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTT > SRR4302540.5418851/1‑94 (MQ=60)
ATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTT > SRR4302540.7909917/1‑94 (MQ=60)
ATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTT > SRR4302540.8607879/1‑94 (MQ=60)
ATGCTCACCTTTTAGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCGGAGTCCTTCATCAGAAAGCAATGGCAGCGCACGGGCATTCAGCGTT > SRR4302540.1083689/1‑94 (MQ=60)
TGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTT > SRR4302540.634604/1‑94 (MQ=60)
CTCCCCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGGGCACGGGCCTTCAGCGTTTCT > SRR4302540.39519/1‑94 (MQ=60)
CTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCT > SRR4302540.39520/1‑94 (MQ=60)
TCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTG < SRR4302540.4254954/94‑1 (MQ=60)
ACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTCGA > SRR4302540.6424832/1‑94 (MQ=60)
CCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGAT < SRR4302540.1417713/94‑1 (MQ=60)
CCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGAT < SRR4302540.322405/94‑1 (MQ=60)
CCTTTTGGCGAACTGGTGTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGAT < SRR4302540.7566344/94‑1 (MQ=60)
CTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATC < SRR4302540.8597967/94‑1 (MQ=60)
CTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATC > SRR4302540.8746544/1‑94 (MQ=60)
CTGTTGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATC < SRR4302540.9395120/94‑1 (MQ=60)
TGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCC < SRR4302540.1090888/94‑1 (MQ=60)
TGGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCC < SRR4302540.2516646/94‑1 (MQ=60)
GGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCCG < SRR4302540.4267459/94‑1 (MQ=60)
GGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCCG < SRR4302540.2565221/94‑1 (MQ=60)
GGCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCCG < SRR4302540.9628314/94‑1 (MQ=60)
GCGAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCCGG < SRR4302540.4509749/94‑1 (MQ=60)
GAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCCGGCA < SRR4302540.5942146/94‑1 (MQ=60)
GAACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCCGGCA < SRR4302540.3154084/94‑1 (MQ=60)
AACTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCCGGCAG < SRR4302540.9278118/94‑1 (MQ=60)
CTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCCGGCAGAA > SRR4302540.2812580/1‑94 (MQ=60)
CTGGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATAACCCGGCAGAA > SRR4302540.2812579/1‑94 (MQ=60)
GGTTTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCCGGCAGAACG < SRR4302540.5815716/94‑1 (MQ=60)
GGTTTTCACTGAGATAACCGGCAGGCTGAGTCCTTCATCAGAAAGAAATGCCAGCGCACGAGCATTCAGCGTTTCTGGATCAACCGGAAGAACG < SRR4302540.9095289/94‑1 (MQ=60)
TTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCCGGCAGAACGATT > SRR4302540.5850085/1‑94 (MQ=60)
TTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCCGGCAGAACGATT < SRR4302540.6808982/94‑1 (MQ=60)
TTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCCGGCAGAACGATT < SRR4302540.6692465/94‑1 (MQ=60)
TTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCCGGCAGAACGATT > SRR4302540.447373/1‑94 (MQ=60)
TTTCACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCCGGCAGAACGATT > SRR4302540.4392929/1‑94 (MQ=60)
CACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCGGGCAGAACGATTTCA > SRR4302540.5550398/1‑94 (MQ=60)
ACTGAGATCCCCGGCAGGCTGAGTNCTTCANCAGAANGCAATGCCAGCGCACGGGCATTCAGCGTTTTNGNANNACCCGGCAGNACNANTNNAN > SRR4302540.9848117/1‑94 (MQ=60)
ACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCCGGCAGAACGATTTCAA > SRR4302540.7849090/1‑94 (MQ=60)
ACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCCGGCAGAACGATTTCAA > SRR4302540.1190869/1‑94 (MQ=60)
ACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCCGGCAGAACGATTTCAA > SRR4302540.4896647/1‑94 (MQ=60)
ACTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGGTTCTGGATCACCCGGCAGAACGATTTCAA > SRR4302540.7849091/1‑94 (MQ=60)
CTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCATCGTTTCTGGATCACCCGGCAGAACGATTTCAAT > SRR4302540.9816034/1‑94 (MQ=60)
CTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCCGGCAGAACGATTTCAAT > SRR4302540.717689/1‑94 (MQ=60)
CTGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCCGGCAGAACGATTTCAAT < SRR4302540.2641995/94‑1 (MQ=60)
CTGAGAACCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCCGGCAGAACGATTTCAAT < SRR4302540.8846767/94‑1 (MQ=60)
TGAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCCGGCAGAACGATTTCAATA > SRR4302540.5260970/1‑94 (MQ=60)
GAGATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCCGGCAGAACGATTTCAATAT < SRR4302540.7599863/94‑1 (MQ=60)
GATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCCGGCAGAACGATTTCAATATGT < SRR4302540.8318843/94‑1 (MQ=60)
ATCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCCGGCAGAACGATTTCAATATGTT > SRR4302540.7116302/1‑94 (MQ=60)
TCCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCCGGCAGAACGATTTCAATATGTTC > SRR4302540.416508/1‑94 (MQ=60)
CCCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCCGGCAGAACGATTTCAATATGTTCC < SRR4302540.3175962/94‑1 (MQ=60)
CCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCCGGCAGAACGATTTCAATATGTTCCC < SRR4302540.8238797/94‑1 (MQ=60)
CCCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCCGGCAGAACGATTTCAATATGTTCCC > SRR4302540.2032199/1‑94 (MQ=60)
CCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCCGGCAGAACGATTTCAATATGTTCCCA < SRR4302540.10122740/94‑1 (MQ=60)
CCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCCGGCAGAACGATTTCAATATGTTCCCA < SRR4302540.8955652/94‑1 (MQ=60)
CCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCCGGCAGAACGATTTCAATATGTTCCCA < SRR4302540.949585/94‑1 (MQ=60)
CCGGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCCGGCAGAACGATTTCAATATGTTCCCA < SRR4302540.2326464/94‑1 (MQ=60)
GGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCCGGCAGAACGATTTCAATATGTTCCCAAC < SRR4302540.9724396/94‑1 (MQ=60)
GGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCCGGCAGAACGATTTCAATATGTTCCCAAC < SRR4302540.6798164/94‑1 (MQ=60)
GGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCCGGCAGAACGATTTCAATATGTTCCCAAC > SRR4302540.9845664/1‑94 (MQ=60)
GGCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCCGGCAGAACGATTTCAATATGTTCCCAAC < SRR4302540.6798166/94‑1 (MQ=60)
GCAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCCGGCAGAACGATTTCAATATGTTCCCAACC < SRR4302540.3876745/94‑1 (MQ=60)
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TAGTTGTTTTGCCATCGGTGACCGCCAGCGTCGGATTCGGTAATCGCTCATGCTCACCTTTTGGCGAACTGGTTTTCACTGAGATCCCCGGTAGGCTGAGTCCTTCATCAGAAAGCAATGCCAGCGCACGGGCATTCAGCGTTTCTGGATCACCCGGCAGAACGATTTCAATATGTTCCCAACC > NC_000913/1957360‑1957543
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
