Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,403,767	G→A	P299S (CCG→TCG)	lrhA ←	NADH dehydrogenase transcriptional regulator, LysR family

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,403,767	0	G	A	93.2%	858.7 / 27.1	266	P299S (CCG→TCG)	lrhA	NADH dehydrogenase transcriptional regulator, LysR family
Reads supporting (aligned to +/- strand): ref base G (9/9); new base A (120/128); total (129/137)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.22e-02

Only 100 of 271 total aligned reads displayed.

CTCGTTTTTTACACTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGGAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGAT  >  NC_000913/2403677‑2403856

 tCGTTTTTTACACTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGc                                                                                        >  2:2515969/1‑93 (MQ=255)

  cGTTTTTTACACTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCa                                                                                       <  1:3186573/93‑1 (MQ=255)

  cGTTTTTTACACTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCa                                                                                       <  1:2168015/93‑1 (MQ=255)

   gTTTTTTACACTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTACGAAGCAg                                                                                      <  1:10015265/93‑1 (MQ=255)

    ttttttACACTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGa                                                                                     >  2:6863384/1‑93 (MQ=255)

    ttttttACACTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGa                                                                                     >  1:1494039/1‑93 (MQ=255)

     tttttACACTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCTCTTCCGGAGCAGAc                                                                                    <  1:2748330/93‑1 (MQ=255)

     tttttACACTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGAc                                                                                    <  1:8753061/93‑1 (MQ=255)

     tttttACACTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGAc                                                                                    <  2:2240264/93‑1 (MQ=255)

      ttttACACTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACa                                                                                   >  2:2796556/1‑93 (MQ=255)

      ttttACACTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACa                                                                                   <  1:3751597/93‑1 (MQ=255)

      ttttACACTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACa                                                                                   <  1:4359907/93‑1 (MQ=255)

      ttttACACTATTGTCGCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACa                                                                                   <  1:4135282/93‑1 (MQ=255)

       tttACACTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACAt                                                                                  <  1:8175375/93‑1 (MQ=255)

       tttACACTATTGTCTCAGGAATTATCTATCGTCCATCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACAt                                                                                  <  1:6214056/93‑1 (MQ=255)

        ttACACTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCTCTTCCGGAGCAGACAtt                                                                                 >  1:6579523/1‑93 (MQ=255)

         tACACTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCTCTTCCGGAGCAGACATTg                                                                                <  2:813245/93‑1 (MQ=255)

         tACACTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTg                                                                                >  1:10008716/1‑93 (MQ=255)

           cacTATTGTCTCAGGAATTATCTCTCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTggg                                                                              <  2:5531325/93‑1 (MQ=255)

           cacTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTggg                                                                              <  1:7443160/93‑1 (MQ=255)

           cacTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTggg                                                                              >  1:684586/1‑93 (MQ=255)

           cacTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTggg                                                                              <  1:6095582/93‑1 (MQ=255)

            acTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGc                                                                             >  1:8353395/1‑93 (MQ=255)

            acTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGc                                                                             >  2:4832189/1‑93 (MQ=255)

              tATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTg                                                                           >  2:5780076/1‑93 (MQ=255)

                ttGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCTCTTCCGGAGCAGACATTGGGCTGTa                                                                         <  1:5076185/93‑1 (MQ=255)

                ttGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTa                                                                         <  1:3515430/93‑1 (MQ=255)

                     tcAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATAATCCACTTCCGCAGCAGACATTGGGCTGTATTGcc                                                                    >  1:4133590/1‑93 (MQ=255)

                        ggAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACg                                                                 >  1:7644209/1‑93 (MQ=255)

                          aaTTGTCTATCGTCCGTCGATTGCTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGa                                                               <  2:1044204/93‑1 (MQ=255)

                          aaTTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGa                                                               <  2:3441272/93‑1 (MQ=255)

                           aTTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGAt                                                              <  2:8764107/93‑1 (MQ=255)

                            ttATCTATCGTCCGTCGATTACTCGATATCCCTTTCGATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGAtt                                                             <  1:8414696/93‑1 (MQ=255)

                            ttATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGAtt                                                             <  1:9738359/93‑1 (MQ=255)

                             tatctatcGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTa                                                            >  2:5948650/1‑93 (MQ=255)

                              atctatcGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTAt                                                           >  2:9137569/1‑93 (MQ=255)

                               tctatcGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCTCTTCCGGAGCAGACATTGGGCTGTATTGCCACGGATTATg                                                          <  1:1653017/93‑1 (MQ=255)

                               tctatcGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATg                                                          <  2:8591331/93‑1 (MQ=255)

                                ctatcGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATgg                                                         >  2:9633897/1‑93 (MQ=255)

                                 tatcGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTTTgga                                                        >  1:2030083/1‑92 (MQ=255)

                                 tatcGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGt                                                        <  2:2856642/93‑1 (MQ=255)

                                 tatcGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGt                                                        >  1:1506742/1‑93 (MQ=255)

                                 tatcGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGt                                                        >  1:6317766/1‑93 (MQ=255)

                                  atcGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTa                                                       <  1:2217170/93‑1 (MQ=255)

                                   tcGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAg                                                      >  2:4150153/1‑93 (MQ=255)

                                   tcGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAg                                                      >  1:3409642/1‑93 (MQ=255)

                                    cgtccgtcGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAga                                                     >  2:4037133/1‑92 (MQ=255)

                                      tccgtcGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGctc                                                   >  2:5027422/1‑93 (MQ=255)

                                      tccgtcGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGctc                                                   <  2:5096392/93‑1 (MQ=255)

                                      tccgtcGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGctc                                                   >  2:668811/1‑93 (MQ=255)

                                        cgtcGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCTCTTCCGGAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCtctc                                                 >  2:9300762/1‑93 (MQ=255)

                                         gtcGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTcc                                                >  2:2407021/1‑93 (MQ=255)

                                         gtcGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTcc                                                >  1:9044467/1‑93 (MQ=255)

                                          tcGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCa                                               <  1:4849647/93‑1 (MQ=255)

                                          tcGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATCGGGCTGTATTGCCACGGATTATGGTAGCTCTCCa                                               >  1:4942345/1‑93 (MQ=255)

                                            gATTACTCGATATCCCTTTCAATCAACAATGAATCGTCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATc                                             >  2:9326581/1‑93 (MQ=255)

                                            gATTACTCGATATCCCTTTCAATCAACAATGAATCATCCTCTTCCGGAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATc                                             <  1:925973/93‑1 (MQ=255)

                                               tACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGcc                                          >  2:3823428/1‑93 (MQ=255)

                                               tACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGcc                                          >  2:3567001/1‑93 (MQ=255)

                                                aCTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCt                                         >  2:1750506/1‑93 (MQ=255)

                                                 cTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTg                                        >  1:7962699/1‑93 (MQ=255)

                                                  tCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGa                                       >  1:1342215/1‑93 (MQ=255)

                                                  tCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGa                                       <  1:7062291/93‑1 (MQ=255)

                                                  ccGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGa                                       <  2:7791465/92‑1 (MQ=255)

                                                   cGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGAt                                      <  1:7389747/93‑1 (MQ=255)

                                                   cGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGAt                                      <  2:7365863/93‑1 (MQ=255)

                                                     atatCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAg                                    >  2:2616259/1‑93 (MQ=255)

                                                      tatCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATTGTAGCTCTCCATCGCCTGATAGa                                   >  2:5586790/1‑93 (MQ=255)

                                                      tatCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGa                                   <  1:6403040/93‑1 (MQ=255)

                                                      tatCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGa                                   >  2:1965940/1‑93 (MQ=255)

                                                       atCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGAt                                  <  2:5173534/93‑1 (MQ=255)

                                                       atCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGAt                                  <  2:1128100/93‑1 (MQ=255)

                                                       atCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGAt                                  <  1:8473499/93‑1 (MQ=255)

                                                       atCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGAt                                  <  2:1812597/93‑1 (MQ=255)

                                                        tCCCTTTCAATCAACAATGAATCATCCTCTTCCGGAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATc                                 <  1:4084029/93‑1 (MQ=255)

                                                        tCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATc                                 <  2:3300816/93‑1 (MQ=255)

                                                         cccTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCa                                <  1:9499763/93‑1 (MQ=255)

                                                         cccTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCa                                <  2:6123456/93‑1 (MQ=255)

                                                           cTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCAcc                              >  1:4679803/1‑93 (MQ=255)

                                                            tttCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCt                             <  1:7834226/93‑1 (MQ=255)

                                                             ttCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTg                            <  2:4633684/93‑1 (MQ=255)

                                                                 atcaaCAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGcc                        >  2:6662539/1‑93 (MQ=255)

                                                                  tcaaCAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCa                       >  1:5773052/1‑93 (MQ=255)

                                                                  tcaaCAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCa                       <  2:6240690/93‑1 (MQ=255)

                                                                      caaTGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTc                   >  1:3860381/1‑93 (MQ=255)

                                                                          gAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCatta               <  1:8845773/93‑1 (MQ=255)

                                                                             tcatcCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCAttatta            <  1:6265106/93‑1 (MQ=255)

                                                                              catcCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTAc           <  2:3093992/93‑1 (MQ=255)

                                                                              catcCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTAc           <  2:5247860/93‑1 (MQ=255)

                                                                              catcCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTAc           >  2:3750339/1‑93 (MQ=255)

                                                                                tcCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTg         >  1:8618591/1‑93 (MQ=255)

                                                                                tcCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTg         <  2:7592584/93‑1 (MQ=255)

                                                                                tcCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTg         >  2:1353111/1‑93 (MQ=255)

                                                                                tcCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTg         <  2:5071745/93‑1 (MQ=255)

                                                                                 ccccTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTgg        <  2:1201645/93‑1 (MQ=255)

                                                                                 ccccTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTgg        <  1:3587055/93‑1 (MQ=255)

                                                                                   ccTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGAc      >  2:9756558/1‑93 (MQ=255)

                                                                                     ttCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACgg    >  2:5380323/1‑93 (MQ=255)

                                                                                     ttCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACgg    >  1:9852010/1‑93 (MQ=255)

                                                                                     ttCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACgg    >  1:5962445/1‑93 (MQ=255)

CTCGTTTTTTACACTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGGAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGAT  >  NC_000913/2403677‑2403856

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGGCTCGTTTTTTACACTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGGAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGATCATA  >  NC_000913/2403674‑2403860

CGGCTCGTTTTTTACACTATTGTCTCAGGAATTATCTATCATCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGA                                                                                               >  SRR4302540.9333950/1‑94 (MQ=60)

 GGCTCGTTTTTTACACTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAA                                                                                              <  SRR4302540.2053498/94‑1 (MQ=60)

 GGCTCGTTTTTTACACTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAA                                                                                              >  SRR4302540.8450868/1‑94 (MQ=60)

   CTCGTTTTTTACACTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGC                                                                                            >  SRR4302540.8202186/1‑94 (MQ=60)

     CGTTTTTTACACTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAG                                                                                          <  SRR4302540.2191388/94‑1 (MQ=60)

     CGTTTTTTACACTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAG                                                                                          <  SRR4302540.3221195/94‑1 (MQ=60)

      GTTTTTTACACTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGA                                                                                         >  SRR4302540.1510478/1‑94 (MQ=60)

      GTTTTTTACACTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTACGAAGCAGA                                                                                         <  SRR4302540.10131852/94‑1 (MQ=60)

      GTTTTTTACACTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTACGAAGCAGA                                                                                         <  SRR4302540.10131851/94‑1 (MQ=60)

       TTTTTTACACTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGAC                                                                                        >  SRR4302540.1139836/1‑94 (MQ=60)

        TTTTTACACTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCTCTTCCGGAGCAGACA                                                                                       <  SRR4302540.2778024/94‑1 (MQ=60)

        TTTTTACACTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACA                                                                                       >  SRR4302540.2062138/1‑94 (MQ=60)

        TTTTTACACTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACA                                                                                       <  SRR4302540.8854607/94‑1 (MQ=60)

         TTTTACACTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACAT                                                                                      <  SRR4302540.4180024/94‑1 (MQ=60)

         TTTTACACTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACAT                                                                                      <  SRR4302540.4020621/94‑1 (MQ=60)

         TTTTACACTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACAT                                                                                      <  SRR4302540.3792525/94‑1 (MQ=60)

         TTTTACACTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACAT                                                                                      <  SRR4302540.4407321/94‑1 (MQ=60)

         TTTTACACTATTGTCGCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACAT                                                                                      <  SRR4302540.4180023/94‑1 (MQ=60)

          TTTACACTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCTCTTCCGGAGCAGACATT                                                                                     >  SRR4302540.6652405/1‑94 (MQ=60)

          TTTACACTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATT                                                                                     <  SRR4302540.6370903/94‑1 (MQ=60)

          TTTACACTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATT                                                                                     <  SRR4302540.8270334/94‑1 (MQ=60)

          TTTACACTATTGTCTCAGGAATTATCTATCGTCCATCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATT                                                                                     <  SRR4302540.6283201/94‑1 (MQ=60)

           TTACACTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTG                                                                                    >  SRR4302540.10125269/1‑94 (MQ=60)

             ACACTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGG                                                                                  >  SRR4302540.691932/1‑94 (MQ=60)

              CACTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGC                                                                                 >  SRR4302540.8450348/1‑94 (MQ=60)

              CACTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGC                                                                                 >  SRR4302540.9912492/1‑94 (MQ=60)

              CACTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGC                                                                                 <  SRR4302540.7526086/94‑1 (MQ=60)

              CACTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGC                                                                                 <  SRR4302540.6163427/94‑1 (MQ=60)

               ACTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAAGGAATCATCCCCTTCCGAAGCAGACATTGGGCG                                                                                >  SRR4302540.7815258/1‑94 (MQ=60)

                CTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTG                                                                               >  SRR4302540.144019/1‑94 (MQ=60)

                  ATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTA                                                                             >  SRR4302540.4621733/1‑94 (MQ=60)

                  ATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTA                                                                             >  SRR4302540.6629270/1‑94 (MQ=60)

                   TTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCTCTTCCGGAGCAGACATTGGGCTGTAT                                                                            <  SRR4302540.5131069/94‑1 (MQ=60)

                   TTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTAT                                                                            <  SRR4302540.3553728/94‑1 (MQ=60)

                   TTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTAT                                                                            <  SRR4302540.1918398/94‑1 (MQ=60)

                   TTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTAT                                                                            <  SRR4302540.2778355/94‑1 (MQ=60)

                   TTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTAT                                                                            <  SRR4302540.73143/94‑1 (MQ=60)

                     GTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTG                                                                          <  SRR4302540.1617233/94‑1 (MQ=60)

                     GTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTG                                                                          <  SRR4302540.4478467/94‑1 (MQ=60)

                     GTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTG                                                                          <  SRR4302540.8625199/94‑1 (MQ=60)

                       CTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCC                                                                        >  SRR4302540.4178309/1‑94 (MQ=60)

                       CTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATAATCCACTTCCGCAGCAGACATTGGGCTGTATTGCC                                                                        >  SRR4302540.4178308/1‑94 (MQ=60)

                        TCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCA                                                                       <  SRR4302540.150522/94‑1 (MQ=60)

                         CAGGAATTATCTAGCGTCCGTCGATTACTCGATATCCCGTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCAC                                                                      <  SRR4302540.2478832/94‑1 (MQ=60)

                          AGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACG                                                                     >  SRR4302540.7730248/1‑94 (MQ=60)

                          AGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACG                                                                     >  SRR4302540.7730247/1‑94 (MQ=60)

                          AGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACG                                                                     <  SRR4302540.1554933/94‑1 (MQ=60)

                           GGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGG                                                                    <  SRR4302540.2512988/94‑1 (MQ=60)

                           GGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGG                                                                    >  SRR4302540.4137577/1‑94 (MQ=60)

                             AATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGAT                                                                  >  SRR4302540.524701/1‑94 (MQ=60)

                              ATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATT                                                                 >  SRR4302540.195677/1‑94 (MQ=60)

                              ATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATT                                                                 >  SRR4302540.8403849/1‑94 (MQ=60)

                               TTATCTATCGTCCGTCGATTACTCGATATCCCTTTCGATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTA                                                                <  SRR4302540.8512367/94‑1 (MQ=60)

                               TTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTA                                                                <  SRR4302540.9852687/94‑1 (MQ=60)

                                  TCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCTCTTCCGGAGCAGACATTGGGCTGTATTGCCACGGATTATGG                                                             <  SRR4302540.1671036/94‑1 (MQ=60)

                                  TCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGG                                                             <  SRR4302540.3452008/94‑1 (MQ=60)

                                  TCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGG                                                             >  SRR4302540.9293043/1‑94 (MQ=60)

                                  TCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGG                                                             >  SRR4302540.918954/1‑94 (MQ=60)

                                   CTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTttgga                                                            >  SRR4302540.2051996/1‑89 (MQ=60)

                                   CTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGT                                                            >  SRR4302540.6388117/1‑94 (MQ=60)

                                   CTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGT                                                            >  SRR4302540.1523373/1‑94 (MQ=60)

                                     ATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAG                                                          >  SRR4302540.3446779/1‑94 (MQ=60)

                                     ATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAG                                                          <  SRR4302540.2241087/94‑1 (MQ=60)

                                     ATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAG                                                          <  SRR4302540.2241088/94‑1 (MQ=60)

                                      TCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCTCTTCCGGAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGC                                                         <  SRR4302540.8743838/94‑1 (MQ=60)

                                       CGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCT                                                        >  SRR4302540.9892505/1‑94 (MQ=60)

                                        GTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCTCTTCCGGAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTC                                                       >  SRR4302540.6638761/1‑94 (MQ=60)

                                        GTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTT                                                       >  SRR4302540.5053227/1‑94 (MQ=60)

                                        GTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTC                                                       <  SRR4302540.4083963/94‑1 (MQ=60)

                                        GTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTC                                                       >  SRR4302540.4201064/1‑94 (MQ=60)

                                          CCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTC                                                     >  SRR4302540.7111604/1‑94 (MQ=60)

                                           CGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGCTTATCGGAGCTCTCC                                                    >  SRR4302540.7746114/1‑94 (MQ=60)

                                           CGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCC                                                    >  SRR4302540.9153033/1‑94 (MQ=60)

                                            GTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCA                                                   >  SRR4302540.3546723/1‑94 (MQ=60)

                                            GTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATCGGGCTGTATTGCCACGGATTATGGTAGCTCTCCA                                                   >  SRR4302540.4995680/1‑94 (MQ=60)

                                             TCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCAT                                                  <  SRR4302540.4901603/94‑1 (MQ=60)

                                             TCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCAT                                                  <  SRR4302540.1079931/94‑1 (MQ=60)

                                             TCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCAT                                                  <  SRR4302540.7507313/94‑1 (MQ=60)

                                              CGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATC                                                 <  SRR4302540.1520276/94‑1 (MQ=60)

                                               GATTACTCGATATCCCTTTCAATCAACAATGAATCATCCTCTTCCGGAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCG                                                <  SRR4302540.935726/94‑1 (MQ=60)

                                                ATTACTCGATGTCCCTTTCAATCAACAATGAATCATCCTCTTCCGGAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGC                                               >  SRR4302540.6451960/1‑94 (MQ=60)

                                                 TTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCC                                              >  SRR4302540.8865118/1‑94 (MQ=60)

                                                 TTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCC                                              >  SRR4302540.4135967/1‑94 (MQ=60)

                                                  TACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCT                                             <  SRR4302540.4981756/94‑1 (MQ=60)

                                                   ACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTG                                            >  SRR4302540.8055504/1‑94 (MQ=60)

                                                   ACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTG                                            >  SRR4302540.4806259/1‑94 (MQ=60)

                                                   ACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTG                                            >  SRR4302540.8055505/1‑94 (MQ=60)

                                                    CTCGATATCCCTTTCAATCAACAATGAATCATCCTCTTCCGGAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGA                                           >  SRR4302540.812452/1‑94 (MQ=60)

                                                    CTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGA                                           >  SRR4302540.1356282/1‑94 (MQ=60)

                                                    CTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGA                                           >  SRR4302540.827480/1‑94 (MQ=60)

                                                     TCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGAT                                          <  SRR4302540.7140841/94‑1 (MQ=60)

                                                      CGATATCCCTTTCAATCAACAATGAATCATCCTCTTCCGGAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATA                                         <  SRR4302540.7556208/94‑1 (MQ=60)

                                                      CGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATA                                         <  SRR4302540.9731483/94‑1 (MQ=60)

                                                      CGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATA                                         <  SRR4302540.7472081/94‑1 (MQ=60)

                                                       GATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGGAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAG                                        <  SRR4302540.7048331/94‑1 (MQ=60)

                                                       GATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAG                                        >  SRR4302540.6082347/1‑94 (MQ=60)

                                                       GATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAG                                        <  SRR4302540.3817028/94‑1 (MQ=60)

                                                         TATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGAT                                      <  SRR4302540.854202/94‑1 (MQ=60)

                                                         TATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGAT                                      <  SRR4302540.6474313/94‑1 (MQ=60)

                                                         TATCCCTTTCAATCAACAATGAATCATCCCCTGCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGAT                                      <  SRR4302540.6474312/94‑1 (MQ=60)

                                                          ATCCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATC                                     <  SRR4302540.8571905/94‑1 (MQ=60)

                                                           TCCCTTTCAATCAACAATGAATCATCCTCTTCCGGAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCA                                    <  SRR4302540.4128064/94‑1 (MQ=60)

                                                            CCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCAC                                   <  SRR4302540.876695/94‑1 (MQ=60)

                                                            CCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCAC                                   >  SRR4302540.8456571/1‑94 (MQ=60)

                                                            CCCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCAC                                   <  SRR4302540.9612333/94‑1 (MQ=60)

                                                             CCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACC                                  >  SRR4302540.5838810/1‑94 (MQ=60)

                                                             CCTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACC                                  >  SRR4302540.4729868/1‑94 (MQ=60)

                                                              CTTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCT                                 >  SRR4302540.8660541/1‑94 (MQ=60)

                                                               TTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTG                                <  SRR4302540.7925765/94‑1 (MQ=60)

                                                               TTTCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTG                                >  SRR4302540.3865550/1‑94 (MQ=60)

                                                                 TCAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGG                              <  SRR4302540.9407534/94‑1 (MQ=60)

                                                                  CAATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGC                             <  SRR4302540.6274411/94‑1 (MQ=60)

                                                                    ATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCA                           >  SRR4302540.5836823/1‑94 (MQ=60)

                                                                    ATCAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCA                           <  SRR4302540.5076531/94‑1 (MQ=60)

                                                                      CAACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGC                         >  SRR4302540.5659405/1‑94 (MQ=60)

                                                                       AACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCT                        <  SRR4302540.3594822/94‑1 (MQ=60)

                                                                       AACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCT                        <  SRR4302540.6219764/94‑1 (MQ=60)

                                                                       AACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGACACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGCGCCAGCT                        >  SRR4302540.8454900/1‑94 (MQ=60)

                                                                        ACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTC                       <  SRR4302540.6304867/94‑1 (MQ=60)

                                                                        ACAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTC                       >  SRR4302540.3902340/1‑94 (MQ=60)

                                                                         CAATGAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCA                      >  SRR4302540.9132908/1‑94 (MQ=60)

                                                                             GAATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTAT                  <  SRR4302540.8948102/94‑1 (MQ=60)

                                                                               ATCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTA                >  SRR4302540.10090083/1‑94 (MQ=60)

                                                                                TCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTAC               <  SRR4302540.666064/94‑1 (MQ=60)

                                                                                TCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTAC               <  SRR4302540.9465081/94‑1 (MQ=60)

                                                                                TCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTAC               <  SRR4302540.7408271/94‑1 (MQ=60)

                                                                                TCATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTAC               <  SRR4302540.6334801/94‑1 (MQ=60)

                                                                                 CATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACT              <  SRR4302540.3647103/94‑1 (MQ=60)

                                                                                 CATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACT              <  SRR4302540.2907714/94‑1 (MQ=60)

                                                                                  ATCCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTG             >  SRR4302540.8718709/1‑94 (MQ=60)

                                                                                    CCCCTTCCGGAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGC           >  SRR4302540.3412489/1‑94 (MQ=60)

                                                                                    CCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGA           >  SRR4302540.4928095/1‑94 (MQ=60)

                                                                                    CCCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGA           <  SRR4302540.3626231/94‑1 (MQ=60)

                                                                                     CCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGAC          >  SRR4302540.6358751/1‑94 (MQ=60)

                                                                                     CCCTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGAC          <  SRR4302540.3601539/94‑1 (MQ=60)

                                                                                       CTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGG        >  SRR4302540.9967158/1‑94 (MQ=60)

                                                                                       CTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGG        >  SRR4302540.2205944/1‑94 (MQ=60)

                                                                                       CTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGG        >  SRR4302540.912201/1‑94 (MQ=60)

                                                                                       CTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGG        >  SRR4302540.6028708/1‑94 (MQ=60)

                                                                                       CTTCCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGG        >  SRR4302540.6028413/1‑94 (MQ=60)

                                                                                          CCGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGATC     >  SRR4302540.2243712/1‑94 (MQ=60)

                                                                                           CGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTGTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGATCA    >  SRR4302540.2352090/1‑94 (MQ=60)

                                                                                           CGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGATCA    <  SRR4302540.9682620/94‑1 (MQ=60)

                                                                                           CGAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGATCA    <  SRR4302540.230014/94‑1 (MQ=60)

                                                                                            GAAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGATCAT   <  SRR4302540.6201439/94‑1 (MQ=60)

                                                                                             AAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGATCATA  <  SRR4302540.3212324/94‑1 (MQ=60)

                                                                                             AAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGATCATA  >  SRR4302540.2628397/1‑94 (MQ=60)

CGGCTCGTTTTTTACACTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGGAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGATCATA  >  NC_000913/2403674‑2403860

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`