Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,449,280 T→C T109A (ACC→GCC)  b2335 ← putative fimbrial protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,449,2800TC99.4% 1065.3 / ‑4.3 334T109A (ACC→GCC) b2335putative fimbrial protein
Reads supporting (aligned to +/- strand):  ref base T (1/1);  new base C (151/181);  total (152/182)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01

Only 100 of 348 total aligned reads displayed.

GGTTATTGATATTAAATGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGTGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCGTTAGCAAGACTGTTTGTGC  >  NC_000913/2449190‑2449369
                                                                                          |                                                                                         
ggTTATTGATATTAAATGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGa                                                                                         <  1:4668158/93‑1 (MQ=255)
 gTTATTGATATTAAATGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGat                                                                                        >  2:364364/1‑93 (MQ=255)
    aTTGATATTAAATGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATAtt                                                                                     <  1:9514014/93‑1 (MQ=255)
      tGATATTAAATGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTgg                                                                                   <  1:3890990/93‑1 (MQ=255)
      tGATATTAAATGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTgg                                                                                   >  2:5721091/1‑93 (MQ=255)
       gATATTAAATGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGt                                                                                  >  2:3127605/1‑93 (MQ=255)
       gATATTAAATGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGt                                                                                  >  1:3623717/1‑93 (MQ=255)
        atatTAAATGGCGTCTAGCTATTTCCGCCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTa                                                                                 <  2:5199281/93‑1 (MQ=255)
        atatTAAATGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTa                                                                                 <  1:3042438/93‑1 (MQ=255)
        atatTAAATGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTa                                                                                 <  2:4827164/93‑1 (MQ=255)
        atatTAAATGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTa                                                                                 <  1:2157086/93‑1 (MQ=255)
        atatTAAATGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTa                                                                                 <  2:1825672/93‑1 (MQ=255)
        atatTAAATGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTa                                                                                 <  1:174431/93‑1 (MQ=255)
        atatTAAATGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATCggga                                                                                 >  2:2236931/1‑91 (MQ=255)
        atatTAAATGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGATATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTa                                                                                 <  2:6611439/93‑1 (MQ=255)
         tatTAAATGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTAc                                                                                <  1:9816728/93‑1 (MQ=255)
         tatTAAATGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTAc                                                                                >  2:8334788/1‑93 (MQ=255)
         tatTAAATGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTAc                                                                                <  2:1503188/93‑1 (MQ=255)
           ttAAATGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTg                                                                              <  2:491188/93‑1 (MQ=255)
           ttAAATGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTg                                                                              >  2:8778741/1‑93 (MQ=255)
            tAAATGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGa                                                                             <  2:6351865/93‑1 (MQ=255)
            tAAATGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGa                                                                             <  1:7239701/93‑1 (MQ=255)
             aaaTGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAg                                                                            <  1:8184996/93‑1 (MQ=255)
               aTGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTa                                                                          >  1:5889720/1‑93 (MQ=255)
                 ggCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTAcc                                                                        >  1:7762896/1‑93 (MQ=255)
                  gCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCg                                                                       >  2:8254033/1‑93 (MQ=255)
                   gctCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGt                                                                      <  1:1490052/91‑1 (MQ=255)
                    gTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGtt                                                                     <  1:7636583/93‑1 (MQ=255)
                     tCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGttt                                                                    >  1:9958698/1‑93 (MQ=255)
                     tCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGttt                                                                    >  2:2547999/1‑93 (MQ=255)
                     tCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGttt                                                                    <  2:4449554/93‑1 (MQ=255)
                     tCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGttt                                                                    >  1:8487411/1‑93 (MQ=255)
                      ccAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTc                                                                   >  1:6215403/1‑93 (MQ=255)
                      ccAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTc                                                                   <  2:8634068/93‑1 (MQ=255)
                        aGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATCCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGc                                                                 >  2:5029929/1‑93 (MQ=255)
                          atATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTAACCGAATGCCCAGCCCGGCGATATTGGTACTGAGTTCCGTTTCGACg                                                               <  2:9265678/92‑1 (MQ=255)
                           tATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGt                                                              <  2:9834704/93‑1 (MQ=255)
                             ttttCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTa                                                            <  1:3089265/93‑1 (MQ=255)
                             ttttCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTa                                                            >  2:9591814/1‑93 (MQ=255)
                             ttttCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTa                                                            <  2:5446407/93‑1 (MQ=255)
                              tttCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTaa                                                           >  2:6442497/1‑93 (MQ=255)
                                tCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATc                                                         >  1:7504804/1‑93 (MQ=255)
                                 cACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCg                                                        <  2:3422879/93‑1 (MQ=255)
                                  aCCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGt                                                       >  1:2665581/1‑93 (MQ=255)
                                        ggCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGt                                                 <  2:6930577/93‑1 (MQ=255)
                                         gCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAAGGCCCAGCCCGGCGATATTGGTACTGGGTACCGTTTCGCCGTTAATCGTTGAGGTa                                                <  2:3262021/93‑1 (MQ=255)
                                          cAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTAt                                               <  2:1663117/93‑1 (MQ=255)
                                          cAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTAt                                               >  2:2116129/1‑93 (MQ=255)
                                          cAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTAt                                               <  1:8093704/93‑1 (MQ=255)
                                           aaaCAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTAtt                                              >  2:3847438/1‑93 (MQ=255)
                                           aaaCAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTAtt                                              <  1:5266960/93‑1 (MQ=255)
                                            aaCAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTg                                             >  1:9704892/1‑93 (MQ=255)
                                            aaCAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTg                                             >  2:4658368/1‑93 (MQ=255)
                                               aaTGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGccc                                          <  1:6541984/93‑1 (MQ=255)
                                               aaTGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGccc                                          <  2:9771369/93‑1 (MQ=255)
                                                aTGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCt                                         >  2:7910603/1‑93 (MQ=255)
                                                aTGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCt                                         >  2:2991051/1‑93 (MQ=255)
                                                  gAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTa                                       <  2:737421/93‑1 (MQ=255)
                                                  gAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTa                                       >  2:8828434/1‑93 (MQ=255)
                                                   aGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTaa                                      <  2:574333/93‑1 (MQ=255)
                                                   aGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTaa                                      <  1:3718555/93‑1 (MQ=255)
                                                   aGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTaa                                      <  1:5672387/93‑1 (MQ=255)
                                                    gTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAg                                     <  2:3386062/93‑1 (MQ=255)
                                                     ttATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGt                                    <  1:5179223/93‑1 (MQ=255)
                                                     ttATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGt                                    >  1:1343028/1‑93 (MQ=255)
                                                     ttATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGt                                    <  1:8554283/93‑1 (MQ=255)
                                                      tATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGtt                                   <  1:4792792/93‑1 (MQ=255)
                                                      tATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGtt                                   <  1:2052984/93‑1 (MQ=255)
                                                        tCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGc                                 <  2:8430420/93‑1 (MQ=255)
                                                         cGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCa                                <  2:7716951/93‑1 (MQ=255)
                                                           gcgcTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATc                              >  2:5177079/1‑93 (MQ=255)
                                                           gcgcTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATc                              <  1:6408818/93‑1 (MQ=255)
                                                            cgcTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATcc                             <  2:6714172/93‑1 (MQ=255)
                                                              cTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGc                           >  2:6782840/1‑93 (MQ=255)
                                                                tttttCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCaa                         <  1:9219444/92‑1 (MQ=255)
                                                                aTTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCaa                         <  1:4234816/93‑1 (MQ=255)
                                                                 ttttCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAg                        >  1:2882555/1‑93 (MQ=255)
                                                                  tttCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGt                       <  2:8003388/93‑1 (MQ=255)
                                                                  tttCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGt                       <  1:3795229/93‑1 (MQ=255)
                                                                  tttCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGt                       <  1:1197954/93‑1 (MQ=255)
                                                                    tCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCg                     >  1:6916946/1‑93 (MQ=255)
                                                                      tATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCGtt                   <  1:1025392/93‑1 (MQ=255)
                                                                      tATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCGtt                   <  2:6041994/93‑1 (MQ=255)
                                                                       aTCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCGTTa                  >  1:7952041/1‑93 (MQ=255)
                                                                       aTCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCGTTa                  <  2:5600247/93‑1 (MQ=255)
                                                                       aTCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCGTTa                  <  2:4114282/93‑1 (MQ=255)
                                                                          cGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCGTTAGCa               >  1:8999255/1‑93 (MQ=255)
                                                                           gAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCGTTAGCaa              <  1:5354733/93‑1 (MQ=255)
                                                                            aaTGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCGTTAGCAAg             >  1:6765607/1‑93 (MQ=255)
                                                                            aaTGCCCAGCCAGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCGTTAGCAAg             >  1:2096889/1‑93 (MQ=255)
                                                                              tGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCGTTAGCAAGAc           <  1:3511060/93‑1 (MQ=255)
                                                                              tGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCGTTAGCAAGAc           <  1:5458125/93‑1 (MQ=255)
                                                                              tGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCGTTAGCAAGAc           >  2:6266514/1‑93 (MQ=255)
                                                                                cccAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCGTTAGCAAGACTg         >  1:4928182/1‑93 (MQ=255)
                                                                                   cgCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCGTTAGCAAGACTGttt      <  1:3364692/92‑1 (MQ=255)
                                                                                   aGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCGTTAGCAAGACTGttt      <  2:7612613/93‑1 (MQ=255)
                                                                                    gCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCGTTAGCAAGACTGTTtg     <  1:2280380/93‑1 (MQ=255)
                                                                                      ccGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCGTTAGCAAGACTGTTtgtg   <  1:6727479/93‑1 (MQ=255)
                                                                                       cGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCGTTAGCAAGACTGTTTGTGc  >  2:6559758/1‑93 (MQ=255)
                                                                                       cGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCGTTAGCAAGACTGTTTGTGc  >  2:7053458/1‑93 (MQ=255)
                                                                                          |                                                                                         
GGTTATTGATATTAAATGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGTGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCGTTAGCAAGACTGTTTGTGC  >  NC_000913/2449190‑2449369

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GCTGGTTATTGATATTAAATGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGTGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCGTTAGCAAGACTGTTTGTGCAGTT  >  NC_000913/2449187‑2449373
                                                                                             |                                                                                             
GCTGGTTATTGATATTAAATGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGC                                                                                               <  SRR4302540.824465/94‑1 (MQ=60)
 CTGGTTATTGATATTAAATGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCG                                                                                              >  SRR4302540.1341805/1‑94 (MQ=60)
 CTGGTTATTGATATTAAATGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCG                                                                                              >  SRR4302540.1342138/1‑94 (MQ=60)
 CTGGTTATTGATATTAAATGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCG                                                                                              >  SRR4302540.8941532/1‑94 (MQ=60)
   gtgTATTGATATTAAATGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGAT                                                                                            <  SRR4302540.1319763/91‑1 (MQ=60)
   TGTTATTGATATTAAATGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGAT                                                                                            <  SRR4302540.7027391/94‑1 (MQ=60)
   GGTTATTGATATTAAATGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGAT                                                                                            <  SRR4302540.4718121/94‑1 (MQ=60)
   GGTTATTGATATTAAATGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGAT                                                                                            >  SRR4302540.8346969/1‑94 (MQ=60)
    GTTATTGATATTAAATGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATA                                                                                           >  SRR4302540.5559734/1‑94 (MQ=60)
    GTTATTGATATTAAATGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATA                                                                                           <  SRR4302540.480540/94‑1 (MQ=60)
     TTATTGATATTAAATGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGTGATAT                                                                                          >  SRR4302540.8380143/1‑94 (MQ=60)
     TTATTGATATTAAATGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATAT                                                                                          <  SRR4302540.2286980/94‑1 (MQ=60)
      TATTGATATTAAATGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATT                                                                                         >  SRR4302540.4904458/1‑94 (MQ=60)
       ATTGATATTAAATGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTG                                                                                        <  SRR4302540.9626707/94‑1 (MQ=60)
       ATTGATATTAAATGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTG                                                                                        >  SRR4302540.796538/1‑94 (MQ=60)
        TTGATATTAAATGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGG                                                                                       <  SRR4302540.3886008/94‑1 (MQ=60)
        TTGATATTAAATGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGG                                                                                       <  SRR4302540.9400791/94‑1 (MQ=60)
         TGATATTAAATGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGGCCAGCCCGGCGATATTGGT                                                                                      >  SRR4302540.3729451/1‑94 (MQ=60)
         TGATATTAAATGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGT                                                                                      <  SRR4302540.6817890/94‑1 (MQ=60)
         TGATATTAAATGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGT                                                                                      <  SRR4302540.3933237/94‑1 (MQ=60)
         TGATATTAAATGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGT                                                                                      >  SRR4302540.3663372/1‑94 (MQ=60)
         TGATATTAAATGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGT                                                                                      <  SRR4302540.179667/94‑1 (MQ=60)
          TATATTAAATGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTA                                                                                     <  SRR4302540.3457236/94‑1 (MQ=60)
           ATATTAAATGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTAC                                                                                    <  SRR4302540.3075824/94‑1 (MQ=60)
           ATATTAAATGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTAC                                                                                    <  SRR4302540.176173/94‑1 (MQ=60)
           ATATTAAATGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTAC                                                                                    >  SRR4302540.4175343/1‑94 (MQ=60)
           ATATTAAATGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTAC                                                                                    >  SRR4302540.2131239/1‑94 (MQ=60)
           ATATTAAATGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTAC                                                                                    <  SRR4302540.9151213/94‑1 (MQ=60)
           ATATTAAATGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTAC                                                                                    <  SRR4302540.2180305/94‑1 (MQ=60)
            TATTAAATGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACT                                                                                   <  SRR4302540.9931595/94‑1 (MQ=60)
            TATTAAATGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACT                                                                                   <  SRR4302540.5815099/94‑1 (MQ=60)
               TAAATGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAG                                                                                <  SRR4302540.3762518/94‑1 (MQ=60)
               TAAATGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAG                                                                                <  SRR4302540.7320452/94‑1 (MQ=60)
               TAAATGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAG                                                                                <  SRR4302540.8409623/94‑1 (MQ=60)
                AAATGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGT                                                                               <  SRR4302540.6175231/94‑1 (MQ=60)
                AAATGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGT                                                                               <  SRR4302540.5508395/94‑1 (MQ=60)
                AAATGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGT                                                                               <  SRR4302540.8280081/94‑1 (MQ=60)
                 AATGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTA                                                                              >  SRR4302540.5954791/1‑94 (MQ=60)
                 AATGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTA                                                                              >  SRR4302540.5163147/1‑94 (MQ=60)
                 AATGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTA                                                                              >  SRR4302540.5163146/1‑94 (MQ=60)
                  ATGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTAC                                                                             <  SRR4302540.9576753/94‑1 (MQ=60)
                  ATGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTAC                                                                             >  SRR4302540.8612129/1‑94 (MQ=60)
                   TGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACC                                                                            >  SRR4302540.7853623/1‑94 (MQ=60)
                   TGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACC                                                                            >  SRR4302540.5104641/1‑94 (MQ=60)
                    TGCGTCGAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCG                                                                           <  SRR4302540.9310437/94‑1 (MQ=60)
                    GGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCG                                                                           >  SRR4302540.2385474/1‑94 (MQ=60)
                      gcTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTT                                                                         <  SRR4302540.1506436/92‑1 (MQ=60)
                       GTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTT                                                                        <  SRR4302540.7722497/94‑1 (MQ=60)
                       GTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTT                                                                        >  SRR4302540.8586015/1‑94 (MQ=60)
                       GTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTT                                                                        >  SRR4302540.10074920/1‑94 (MQ=60)
                       GTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCAGCGATATTGGTACTGAGTAGCGTTT                                                                        >  SRR4302540.5300492/1‑94 (MQ=60)
                       GTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGACCGGCGATATTGGCACTGAGGACCGTTT                                                                        >  SRR4302540.3521722/1‑94 (MQ=60)
                        TCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTC                                                                       >  SRR4302540.6284559/1‑94 (MQ=60)
                         CCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCG                                                                      <  SRR4302540.3544376/94‑1 (MQ=60)
                         CCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCG                                                                      <  SRR4302540.671984/94‑1 (MQ=60)
                         CCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCG                                                                      <  SRR4302540.6579602/94‑1 (MQ=60)
                         CCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCG                                                                      <  SRR4302540.8677497/94‑1 (MQ=60)
                         CCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCG                                                                      <  SRR4302540.8677498/94‑1 (MQ=60)
                             CTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGT                                                                  <  SRR4302540.7506888/94‑1 (MQ=60)
                             CTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTCTCGCCGT                                                                  >  SRR4302540.7252606/1‑94 (MQ=60)
                              TATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTT                                                                 <  SRR4302540.5286712/94‑1 (MQ=60)
                               ATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTA                                                                <  SRR4302540.1235822/94‑1 (MQ=60)
                                TTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAA                                                               <  SRR4302540.3123155/94‑1 (MQ=60)
                                 TTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAAT                                                              <  SRR4302540.3966635/94‑1 (MQ=60)
                                  TTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATC                                                             <  SRR4302540.8858303/94‑1 (MQ=60)
                                  TTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATC                                                             >  SRR4302540.7588357/1‑94 (MQ=60)
                                  TTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATC                                                             >  SRR4302540.7588681/1‑94 (MQ=60)
                                    CACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGT                                                           >  SRR4302540.2694479/1‑94 (MQ=60)
                                      CCGACGGCAAACAATGAGTTATGGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTG                                                         <  SRR4302540.474154/94‑1 (MQ=60)
                                      CCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTG                                                         >  SRR4302540.8153300/1‑94 (MQ=60)
                                       CGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGA                                                        >  SRR4302540.5987889/1‑94 (MQ=60)
                                       CGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGA                                                        <  SRR4302540.9964741/94‑1 (MQ=60)
                                        GACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAG                                                       <  SRR4302540.8644156/94‑1 (MQ=60)
                                         GCGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGG                                                      <  SRR4302540.1437780/94‑1 (MQ=60)
                                         ACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGG                                                      <  SRR4302540.7533375/94‑1 (MQ=60)
                                          CGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGT                                                     >  SRR4302540.2497571/1‑94 (MQ=60)
                                          CGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGT                                                     <  SRR4302540.1547343/94‑1 (MQ=60)
                                           GGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTT                                                    >  SRR4302540.8232084/1‑94 (MQ=60)
                                           GGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTA                                                    <  SRR4302540.1159957/94‑1 (MQ=60)
                                           GGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTA                                                    >  SRR4302540.2121976/1‑94 (MQ=60)
                                            GCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTAT                                                   <  SRR4302540.2104130/94‑1 (MQ=60)
                                            GCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTAT                                                   <  SRR4302540.816632/94‑1 (MQ=60)
                                             CAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATT                                                  >  SRR4302540.824239/1‑94 (MQ=60)
                                             CAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATT                                                  <  SRR4302540.8187652/94‑1 (MQ=60)
                                             CAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATT                                                  >  SRR4302540.9756693/1‑94 (MQ=60)
                                             CAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATT                                                  <  SRR4302540.7907549/94‑1 (MQ=60)
                                              AAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTG                                                 >  SRR4302540.9818966/1‑94 (MQ=60)
                                              AAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTG                                                 <  SRR4302540.5324443/94‑1 (MQ=60)
                                              AAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTG                                                 <  SRR4302540.5324442/94‑1 (MQ=60)
                                                ACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCC                                               <  SRR4302540.564720/94‑1 (MQ=60)
                                                  AATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCT                                             <  SRR4302540.6614580/94‑1 (MQ=60)
                                                  AATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCACCGTTCATCGTTGAGGTATTGCCCT                                             >  SRR4302540.10050019/1‑94 (MQ=60)
                                                      AGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAG                                         <  SRR4302540.3759129/94‑1 (MQ=60)
                                                      AGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAG                                         <  SRR4302540.5734846/94‑1 (MQ=60)
                                                       GTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGT                                        <  SRR4302540.2269091/94‑1 (MQ=60)
                                                       GTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGT                                        >  SRR4302540.1357106/1‑94 (MQ=60)
                                                       GTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGT                                        <  SRR4302540.6878085/94‑1 (MQ=60)
                                                       GTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGACTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGT                                        <  SRR4302540.1089239/94‑1 (MQ=60)
                                                        TTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTT                                       <  SRR4302540.5235591/94‑1 (MQ=60)
                                                        TTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTT                                       <  SRR4302540.3222534/94‑1 (MQ=60)
                                                        TTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTT                                       <  SRR4302540.8653639/94‑1 (MQ=60)
                                                         TATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTG                                      <  SRR4302540.2075085/94‑1 (MQ=60)
                                                         TATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTG                                      <  SRR4302540.4844055/94‑1 (MQ=60)
                                                         TATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTG                                      >  SRR4302540.7842267/1‑94 (MQ=60)
                                                         TATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTG                                      <  SRR4302540.3341452/94‑1 (MQ=60)
                                                          ATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGC                                     >  SRR4302540.8087017/1‑94 (MQ=60)
                                                             GGCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATC                                  <  SRR4302540.5948839/94‑1 (MQ=60)
                                                              GCGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCC                                 <  SRR4302540.6480146/94‑1 (MQ=60)
                                                               CGCTATTTTCTATCCGAATGCCCAGCCCGGCGGTATTGGGACTGAGTACCGTTTCGCCGGTAATGGTTGAGGTATTGCCCTTAAGTTGCATGCG                                >  SRR4302540.9889419/1‑94 (MQ=60)
                                                               CGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCG                                >  SRR4302540.5330304/1‑94 (MQ=60)
                                                               CGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCG                                >  SRR4302540.3700847/1‑94 (MQ=60)
                                                               CGCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCG                                >  SRR4302540.5440547/1‑94 (MQ=60)
                                                                GCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGC                               >  SRR4302540.6802436/1‑94 (MQ=60)
                                                                GCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGC                               >  SRR4302540.6583854/1‑94 (MQ=60)
                                                                GCTATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGC                               <  SRR4302540.3780363/94‑1 (MQ=60)
                                                                  TATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAA                             <  SRR4302540.4915607/94‑1 (MQ=60)
                                                                  TATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAA                             <  SRR4302540.4795172/94‑1 (MQ=60)
                                                                  TATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAA                             >  SRR4302540.6775864/1‑94 (MQ=60)
                                                                  TATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAA                             >  SRR4302540.1477204/1‑94 (MQ=60)
                                                                  TATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTAAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAA                             >  SRR4302540.7649157/1‑94 (MQ=60)
                                                                   TTTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAG                            <  SRR4302540.9330024/94‑1 (MQ=60)
                                                                   ATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAG                            >  SRR4302540.2913920/1‑94 (MQ=60)
                                                                   ATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAG                            <  SRR4302540.4280897/94‑1 (MQ=60)
                                                                   ATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAG                            >  SRR4302540.4485269/1‑94 (MQ=60)
                                                                   ATTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAG                            <  SRR4302540.989806/94‑1 (MQ=60)
                                                                    TTTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGT                           >  SRR4302540.2088199/1‑94 (MQ=60)
                                                                     TTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTC                          <  SRR4302540.3824717/94‑1 (MQ=60)
                                                                     TTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTC                          <  SRR4302540.3836591/94‑1 (MQ=60)
                                                                     TTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTC                          <  SRR4302540.4069079/94‑1 (MQ=60)
                                                                     TTTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTC                          <  SRR4302540.1210277/94‑1 (MQ=60)
                                                                      TTCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCG                         >  SRR4302540.6993913/1‑94 (MQ=60)
                                                                       TCTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCGT                        <  SRR4302540.6390779/94‑1 (MQ=60)
                                                                       TCTATCCGAATGCCCAGCCCGGCGATAATGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCGT                        <  SRR4302540.1373218/94‑1 (MQ=60)
                                                                        CTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCGTT                       >  SRR4302540.695200/1‑94 (MQ=60)
                                                                        CTATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCGTT                       <  SRR4302540.3141026/94‑1 (MQ=60)
                                                                         TATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCGTTA                      >  SRR4302540.8044736/1‑94 (MQ=60)
                                                                         TATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCGTTA                      <  SRR4302540.3106102/94‑1 (MQ=60)
                                                                         TATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCGTTA                      <  SRR4302540.1035792/94‑1 (MQ=60)
                                                                         TATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCGTTA                      <  SRR4302540.7626496/94‑1 (MQ=60)
                                                                          ATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTACGTTGCATCCGCAAGTCGTTAG                     >  SRR4302540.5407453/1‑94 (MQ=60)
                                                                          ATCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCGTTAG                     <  SRR4302540.9397655/94‑1 (MQ=60)
                                                                           TCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCGTTAGC                    >  SRR4302540.6340829/1‑94 (MQ=60)
                                                                           TCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCGTTAGC                    >  SRR4302540.6340827/1‑94 (MQ=60)
                                                                           TCCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCGTTAGC                    <  SRR4302540.2719711/94‑1 (MQ=60)
                                                                            CCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCGTTAGCA                   >  SRR4302540.9107221/1‑94 (MQ=60)
                                                                            CCGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCGTTAGCA                   <  SRR4302540.277163/94‑1 (MQ=60)
                                                                             CGAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCGTTAGCAA                  >  SRR4302540.9741744/1‑94 (MQ=60)
                                                                             CGAATGCCCAGCCCGGCGATATTGGTACTGAGCACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCGTTAGCAA                  >  SRR4302540.5927845/1‑94 (MQ=60)
                                                                              GAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCGTTAGCAAG                 >  SRR4302540.3652450/1‑94 (MQ=60)
                                                                              GAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCGTTAGCAAG                 >  SRR4302540.6840378/1‑94 (MQ=60)
                                                                              GAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCGTTAGCAAG                 <  SRR4302540.5413531/94‑1 (MQ=60)
                                                                              GAATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCGTTAGCAAG                 <  SRR4302540.1603420/94‑1 (MQ=60)
                                                                              GAATGCCCAGCCAGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCGTTAGCAAG                 >  SRR4302540.2119401/1‑94 (MQ=60)
                                                                                ATGCCCGGCCCGGCTATATTGGTACTGAGTCCCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCGTTAGCAAGAC               <  SRR4302540.7786071/94‑1 (MQ=60)
                                                                                ATGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCGTTAGCAAGAC               <  SRR4302540.7786069/94‑1 (MQ=60)
                                                                                 TGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCGTTAGCAAGACT              <  SRR4302540.6799852/94‑1 (MQ=60)
                                                                                 TGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCGTTAGCAAGACT              <  SRR4302540.3549308/94‑1 (MQ=60)
                                                                                 TGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCGTTAGCAAGACT              <  SRR4302540.3549309/94‑1 (MQ=60)
                                                                                 TGCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCGTTAGCAAGACT              <  SRR4302540.5518196/94‑1 (MQ=60)
                                                                                  GCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCGTTAGCAAGACTG             >  SRR4302540.4981304/1‑94 (MQ=60)
                                                                                  GCCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCGTTAGCAAGACTG             >  SRR4302540.3892883/1‑94 (MQ=60)
                                                                                   CCCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCCTCCGCAAGTCGTTAGCAAGACTGT            >  SRR4302540.3078538/1‑94 (MQ=60)
                                                                                    CCAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCGTTAGCAAGACTGTT           <  SRR4302540.9874753/94‑1 (MQ=60)
                                                                                     CAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCGTTAGCAAGACTGTTT          <  SRR4302540.3034887/94‑1 (MQ=60)
                                                                                     CAGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCGTTAGCAAGACTGTTT          >  SRR4302540.3606379/1‑94 (MQ=60)
                                                                                      CGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCGTTAGCAAGACTGTTTG         <  SRR4302540.3401505/94‑1 (MQ=60)
                                                                                      AGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCGTTAGCAAGACTGTTTG         >  SRR4302540.1892237/1‑94 (MQ=60)
                                                                                      AGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCGTTAGCAAGACTGTTTG         <  SRR4302540.3067065/94‑1 (MQ=60)
                                                                                      AGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCGTTAGCAAGACTGTTTG         <  SRR4302540.2938841/94‑1 (MQ=60)
                                                                                      AGCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCGTTAGCAAGACTGTTTG         >  SRR4302540.2179621/1‑94 (MQ=60)
                                                                                       GCCCGGCGATATTGTTACTGAGTACCTTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCGTTAGCAAGACTGTTTGT        <  SRR4302540.2412045/94‑1 (MQ=60)
                                                                                       GCCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCGTTAGCAAGACTGTTTGT        <  SRR4302540.2304876/94‑1 (MQ=60)
                                                                                        CCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCGTTAGCAAGACTGTTTGTG       <  SRR4302540.4289430/94‑1 (MQ=60)
                                                                                        CCCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCATTAAGTTGCATCCGCAAGTCGTTAGCAAGACTGTTTGTG       <  SRR4302540.6954476/94‑1 (MQ=60)
                                                                                         CCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCGTTAGCAAGACTGTTTGTGC      >  SRR4302540.1887761/1‑94 (MQ=60)
                                                                                         CCGGCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCGTTAGCAAGACTGTTTGTGC      <  SRR4302540.6801745/94‑1 (MQ=60)
                                                                                            GCGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCGTTAGCAAGACTGTTTGTGCAGT   >  SRR4302540.1049100/1‑94 (MQ=60)
                                                                                             CGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCGTTAGCAAGACTGTTTGTGCAGTT  >  SRR4302540.6297055/1‑94 (MQ=60)
                                                                                             CGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCGTTAGCAAGACTGTTTGTGCAGTT  >  SRR4302540.3419298/1‑94 (MQ=60)
                                                                                             |                                                                                             
GCTGGTTATTGATATTAAATGGCGTCCAGCTATTTTCACCGACGGCAAACAATGAGTTATCGGCGCTATTTTCTATCCGAATGCCCAGCCCGGTGATATTGGTACTGAGTACCGTTTCGCCGTTAATCGTTGAGGTATTGCCCTTAAGTTGCATCCGCAAGTCGTTAGCAAGACTGTTTGTGCAGTT  >  NC_000913/2449187‑2449373

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑