Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,006,483 +C coding (183/207 nt) b4554 ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,006,4801.C97.8% 1280.9 / 16.5 405coding (186/207 nt)b4554hypothetical protein
Reads supporting (aligned to +/- strand):  ref base . (9/0);  new base C (192/204);  total (201/204)
Fisher's exact test for biased strand distribution p-value = 1.67e-03
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.75e-01

Only 100 of 447 total aligned reads displayed.

GGCGCGCCACTGCTGGATTCCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGT‑C‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAACCGTGG  >  NC_000913/4006388‑4006567
                                                                                             |                                                                                          
ggcgCGCCACTGCTGGATTCCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGt                                                                                             <  2:8365426/93‑1 (MQ=255)
ggcgCGCCACTGCTGGATTCCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGt                                                                                             <  1:517442/93‑1 (MQ=255)
 gcgcgcCACTGCTGGATTCCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGT‑c                                                                                           <  1:3290531/93‑1 (MQ=255)
  cgcgcCACTGCTGGATTCCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGT‑c‑c                                                                                         <  2:9598157/93‑1 (MQ=255)
  cgcgcCACTGCTGGATTCCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGT‑c‑c                                                                                         <  2:9051845/93‑1 (MQ=255)
      ccACTGCTGGATTCCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATCGCGT‑c‑c‑ccaa                                                                                    >  1:6534654/1‑90 (MQ=255)
       cACTGCTGGATTCCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGT‑c‑c‑ccaac                                                                                   <  1:4178875/93‑5 (MQ=255)
              ggATTCCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGc                                                                            >  1:1642541/1‑93 (MQ=255)
              ggATTCCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGc                                                                            >  2:6490902/1‑93 (MQ=255)
              ggATTCCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGc                                                                            >  1:3837777/1‑93 (MQ=255)
              ggATTCCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGT‑CAC‑C‑AACCCCACGc                                                                            >  1:2297286/1‑93 (MQ=255)
               gATTCCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGcc                                                                           >  2:7474107/1‑93 (MQ=255)
               gATTCCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGcc                                                                           >  2:1710888/1‑93 (MQ=255)
                aTTCCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAGATAGCGT‑CTC‑C‑AACCCCACGCCa                                                                          >  2:5525578/1‑93 (MQ=255)
                 ttCCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCaa                                                                         <  2:1809137/93‑1 (MQ=255)
                 ttCCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCaa                                                                         <  1:8341714/93‑1 (MQ=255)
                 ttCCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCaa                                                                         <  2:3523304/93‑1 (MQ=255)
                   cccAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAAcc                                                                       <  2:2475134/93‑1 (MQ=255)
                   cccAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAAcc                                                                       <  1:4465415/93‑1 (MQ=255)
                   cccAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAAcc                                                                       <  2:4903296/93‑1 (MQ=255)
                     cAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAg                                                                     >  1:4315942/1‑93 (MQ=255)
                      aGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGc                                                                    <  1:5998996/93‑1 (MQ=255)
                       gCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAATACTTCAAACGCAATCACTGAGCGGGAAAATAGCGT‑C‑C‑CGAACCCCACGCCAACCAGca                                                                   >  1:7193793/1‑93 (MQ=255)
                           aaTCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAat                                                               <  1:1896296/93‑1 (MQ=255)
                            aTCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAata                                                              <  1:1133613/93‑1 (MQ=255)
                            aTCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAata                                                              <  1:9899381/93‑1 (MQ=255)
                            aTCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCAATGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAata                                                              <  1:7456314/93‑1 (MQ=255)
                             tCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGT‑C‑CTC‑AACCCCACGCCAACCAGCACAatat                                                             >  1:1466092/1‑93 (MQ=255)
                              cAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATg                                                            <  2:6650167/93‑1 (MQ=255)
                              cAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATg                                                            >  2:512956/1‑93 (MQ=255)
                                aGTAAGCCTCACCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGaa                                                          <  2:2250978/93‑1 (MQ=255)
                                aGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGaa                                                          <  2:6087068/93‑1 (MQ=255)
                                aGTAAGCCACTCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGaa                                                          <  2:9483123/93‑1 (MQ=255)
                                  tAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATc                                                        <  1:2863869/93‑1 (MQ=255)
                                   aaGCCGCGCCTACCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCg                                                       <  1:8778686/93‑1 (MQ=255)
                                    aGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGc                                                      >  1:6973296/1‑93 (MQ=255)
                                     gCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGcc                                                     <  1:5503054/93‑1 (MQ=255)
                                     gCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGcc                                                     <  2:1365520/93‑1 (MQ=255)
                                     gCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGT‑CAC‑C‑AACCCCACGCCAACCAGCACAATATGAATCGcc                                                     >  1:8536287/1‑93 (MQ=255)
                                      ccGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCa                                                    <  2:7199832/93‑1 (MQ=255)
                                      ccGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCa                                                    <  1:1570576/93‑1 (MQ=255)
                                        gcgcCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGt                                                  >  2:4040038/1‑93 (MQ=255)
                                         cgcCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTc                                                 <  1:10031478/93‑1 (MQ=255)
                                          gcCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTcc                                                <  2:9233169/93‑1 (MQ=255)
                                             tGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGt                                             <  1:6828849/93‑1 (MQ=255)
                                             tGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGt                                             >  2:6870871/1‑93 (MQ=255)
                                             tGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGt                                             >  2:676018/1‑93 (MQ=255)
                                             tGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATAGCCAGTCCGGt                                             >  1:6475830/1‑93 (MQ=255)
                                              gCCCCCTTCAACGCTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTc                                            <  2:792255/93‑1 (MQ=255)
                                              gCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTc                                            >  1:6736523/1‑93 (MQ=255)
                                                 cacttcaacacttcaaACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGa                                         <  1:9808287/93‑1 (MQ=255)
                                                 cacttcaacacttcaaACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGa                                         >  1:7813067/1‑93 (MQ=255)
                                                 cacttcaacacttcaaACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGa                                         >  1:477543/1‑93 (MQ=255)
                                                   cttcaacacttcaaACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAg                                       >  2:8515952/1‑93 (MQ=255)
                                                   cttcaacacttcaaACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAg                                       <  1:5368248/93‑1 (MQ=255)
                                                    ttcaacacttcaaACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGc                                      >  2:5990163/1‑93 (MQ=255)
                                                     tcaacacttcaaACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGcc                                     <  2:4360190/93‑1 (MQ=255)
                                                     tcaacacttcaaACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGcc                                     >  1:7376696/1‑93 (MQ=255)
                                                       aacacttcaaACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCa                                   >  1:6629293/1‑93 (MQ=255)
                                                       aacacttcaaACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCa                                   <  2:5784397/93‑1 (MQ=255)
                                                        acacttcaaACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAg                                  <  2:2170885/93‑1 (MQ=255)
                                                          acttcaaACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCa                                >  2:4490372/1‑93 (MQ=255)
                                                          acttcaaACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCa                                >  2:4980047/1‑93 (MQ=255)
                                                           cttcaaACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGCAGCCCCGCaa                               >  2:8188337/1‑93 (MQ=255)
                                                           cttcaaACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCaa                               >  1:36661/1‑93 (MQ=255)
                                                           cttcaaACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCaa                               <  1:2777868/93‑1 (MQ=255)
                                                           cttcaaACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCaa                               >  2:3958006/1‑93 (MQ=255)
                                                            ttcaaACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAAt                              <  2:7891849/93‑1 (MQ=255)
                                                            ttcaaACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAAt                              >  1:2678751/1‑93 (MQ=255)
                                                             tcaaACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATa                             >  2:1465799/1‑93 (MQ=255)
                                                              ccaaCGCAAACACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAg                            <  1:4566172/91‑1 (MQ=255)
                                                               aaaCGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGa                           <  2:3763610/93‑1 (MQ=255)
                                                                 aCGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACg                         <  2:2109656/93‑1 (MQ=255)
                                                                   gCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGcc                       >  1:9511408/1‑93 (MQ=255)
                                                                    cAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCa                      >  1:8202332/1‑93 (MQ=255)
                                                                     aaTCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCAc                     >  2:2610861/1‑93 (MQ=255)
                                                                     aaTCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCAc                     >  1:4031555/1‑93 (MQ=255)
                                                                      aTCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCAcc                    <  1:2024240/93‑1 (MQ=255)
                                                                       tCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCAccg                   >  1:2350952/1‑93 (MQ=255)
                                                                        cACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCAccgc                  >  1:5815728/1‑93 (MQ=255)
                                                                        cACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGACAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCAccgc                  >  1:5619789/1‑93 (MQ=255)
                                                                         aCTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCAccgcg                 >  2:8849174/1‑93 (MQ=255)
                                                                         aCTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCAccgcg                 >  2:1250666/1‑93 (MQ=255)
                                                                          cTGAGCGGTAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCAccgcgc                <  1:6950849/93‑1 (MQ=255)
                                                                          cTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCAccgcgc                >  1:2430366/1‑93 (MQ=255)
                                                                          cTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCAccgcgc                <  2:8787845/93‑1 (MQ=255)
                                                                            gAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCAccgcgccg              >  1:625633/1‑93 (MQ=255)
                                                                             aGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCAccgcgccgc             <  1:4885949/93‑1 (MQ=255)
                                                                                gggAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGAt          >  2:1136072/1‑93 (MQ=255)
                                                                                gggAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGAt          <  1:3167050/93‑1 (MQ=255)
                                                                                gggAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGAt          <  2:2938173/93‑1 (MQ=255)
                                                                                 ggAAAATAGCGTCC‑C‑C‑AACCCCACGCCAAACAGCACAATATGAATCGCCAGTTAGAACTAAAGCCAAGCAATATACGCCACCCCTCCGCGaaa         >  2:3302209/1‑91 (MQ=255)
                                                                                  gAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATaa        <  2:8637648/93‑1 (MQ=255)
                                                                                   aaaaTAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAAc       <  2:3061654/93‑1 (MQ=255)
                                                                                     aaTAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAACCg     >  2:5309380/1‑93 (MQ=255)
                                                                                      aTAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAACCGt    >  1:9329018/1‑93 (MQ=255)
                                                                                      aTAGCGT‑C‑C‑CTAGCCCCACGCCACCCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAACCGt    <  1:574319/93‑1 (MQ=255)
                                                                                       tAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAACCGTg   >  2:6188087/1‑93 (MQ=255)
                                                                                       tAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAACCGTg   >  2:278077/1‑93 (MQ=255)
                                                                                        aGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAACCGTgg  >  1:9041295/1‑93 (MQ=255)
                                                                                             |                                                                                          
GGCGCGCCACTGCTGGATTCCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGT‑C‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAACCGTGG  >  NC_000913/4006388‑4006567

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 250 total aligned reads displayed.
GCGCCACTGCTGGATTCCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGT‑C‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAACCGTGGTTGAGCGAG  >  NC_000913/4006391‑4006576
                                                                                               |                                                                                              
GCGCCACTGCTGGATTCCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGT‑C‑C‑C‑C                                                                                              <  SRR4302540.4163798/94‑1 (MQ=60)
 CGCCACTGCTGGATTCCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGT‑C‑C‑C‑CA                                                                                             <  SRR4302540.7048240/94‑1 (MQ=60)
  GCCACTGCTGGATTCCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGT‑C‑C‑Ccaa                                                                                             >  SRR4302540.3055280/1‑91 (MQ=60)
  GCCACTGCTGGATTCCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGT‑C‑C‑Ccaa                                                                                             >  SRR4302540.1461201/1‑91 (MQ=60)
    CACTGCTGGATTCCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACC                                                                                           <  SRR4302540.4224250/94‑1 (MQ=60)
     ACTGCTGGATTCCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCC                                                                                          >  SRR4302540.7537330/1‑94 (MQ=60)
     ACTGCTGGATTCCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCC                                                                                          >  SRR4302540.6289214/1‑94 (MQ=60)
     ACTGCTGGATTCCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCC                                                                                          >  SRR4302540.1559756/1‑94 (MQ=60)
      CTGCTGGATTCCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCC                                                                                         >  SRR4302540.5295946/1‑94 (MQ=60)
      CTGCTGGATTCCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCC                                                                                         >  SRR4302540.408153/1‑94 (MQ=60)
       TGCTGGATTCCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCA                                                                                        >  SRR4302540.4766221/1‑94 (MQ=60)
       TGCTGGATTCCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCA                                                                                        >  SRR4302540.2099842/1‑94 (MQ=60)
        GCTGGATTCCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCAC                                                                                       <  SRR4302540.6588837/94‑1 (MQ=60)
        GCTGGATTCCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCAC                                                                                       <  SRR4302540.9810624/94‑1 (MQ=60)
        GCTGGATTCCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCAC                                                                                       >  SRR4302540.7030631/1‑94 (MQ=60)
          TGGATTCCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGC                                                                                     >  SRR4302540.3879518/1‑94 (MQ=60)
          TGGATTCCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGC                                                                                     <  SRR4302540.2241650/94‑1 (MQ=60)
          TGGATTCCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGC                                                                                     >  SRR4302540.9072565/1‑94 (MQ=60)
          TGGATTCCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGC                                                                                     >  SRR4302540.1660488/1‑94 (MQ=60)
          TGGATTCCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGT‑CAC‑C‑AACCCCACGC                                                                                     >  SRR4302540.2322012/1‑94 (MQ=60)
           GGATTCCCAGCCAAATCTAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCC                                                                                    <  SRR4302540.5189153/94‑1 (MQ=60)
           GGATTCCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCC                                                                                    <  SRR4302540.6658229/94‑1 (MQ=60)
              TTCCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAAC                                                                                 >  SRR4302540.8809472/1‑94 (MQ=60)
              TTCCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAAC                                                                                 >  SRR4302540.1027470/1‑94 (MQ=60)
              TTCCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAAC                                                                                 <  SRR4302540.5720624/94‑1 (MQ=60)
              TTCCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAAC                                                                                 <  SRR4302540.8438537/94‑1 (MQ=60)
               TCCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACC                                                                                <  SRR4302540.6109818/94‑1 (MQ=60)
               TCCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACC                                                                                <  SRR4302540.5421221/94‑1 (MQ=60)
                CCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCA                                                                               <  SRR4302540.4513825/94‑1 (MQ=60)
                CCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCA                                                                               <  SRR4302540.4513826/94‑1 (MQ=60)
                CCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCA                                                                               <  SRR4302540.6710244/94‑1 (MQ=60)
                CCCAGCCAAATCAAGTAAGCCGCGCCTGACCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCA                                                                               <  SRR4302540.5871546/94‑1 (MQ=60)
                 CCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAG                                                                              >  SRR4302540.4362935/1‑94 (MQ=60)
                  cctcccagtcaataAAGCCGCGCCTCCCCACTTCAACACCTCAAACCCCATCCCTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGC                                                                             <  SRR4302540.9206098/80‑1 (MQ=56)
                  CAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGC                                                                             >  SRR4302540.479537/1‑94 (MQ=60)
                   CGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCA                                                                            <  SRR4302540.8525545/94‑1 (MQ=60)
                   AGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACCCTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCA                                                                            <  SRR4302540.2059553/94‑1 (MQ=60)
                   AGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCA                                                                            <  SRR4302540.6065478/94‑1 (MQ=60)
                   AGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCA                                                                            <  SRR4302540.2821183/94‑1 (MQ=60)
                       AAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAAT                                                                        <  SRR4302540.6633/94‑1 (MQ=60)
                       AAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAAT                                                                        <  SRR4302540.4405473/94‑1 (MQ=60)
                        AATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATA                                                                       <  SRR4302540.1917045/94‑1 (MQ=60)
                         ATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATAT                                                                      <  SRR4302540.7539118/94‑1 (MQ=60)
                         ATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATAT                                                                      <  SRR4302540.1145428/94‑1 (MQ=60)
                         ATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATAT                                                                      <  SRR4302540.10015025/94‑1 (MQ=60)
                         ATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATAT                                                                      >  SRR4302540.4919928/1‑94 (MQ=60)
                         ATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATAT                                                                      >  SRR4302540.9464966/1‑94 (MQ=60)
                         ATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATAT                                                                      <  SRR4302540.3543510/94‑1 (MQ=60)
                         ATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATAT                                                                      <  SRR4302540.1504781/94‑1 (MQ=60)
                         ATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGT‑C‑CTC‑AACCCCACGCCAACCAGCACAATAT                                                                      >  SRR4302540.1482088/1‑94 (MQ=60)
                         ATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCAATGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATAT                                                                      <  SRR4302540.7539448/94‑1 (MQ=60)
                         ATCAAGTAAGCCGCACCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATAT                                                                      >  SRR4302540.6790958/1‑94 (MQ=60)
                         ATCAAGTAAGCCGCACCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATAT                                                                      >  SRR4302540.6790957/1‑94 (MQ=60)
                          TCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATG                                                                     <  SRR4302540.6429921/94‑1 (MQ=60)
                          TCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATG                                                                     >  SRR4302540.5837603/1‑94 (MQ=60)
                          TCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATG                                                                     >  SRR4302540.9619055/1‑94 (MQ=60)
                           CAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGA                                                                    >  SRR4302540.9297151/1‑94 (MQ=60)
                            AAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAA                                                                   >  SRR4302540.7371760/1‑94 (MQ=60)
                             AGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAAT                                                                  <  SRR4302540.7218935/94‑1 (MQ=60)
                              GTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATC                                                                 <  SRR4302540.3133681/94‑1 (MQ=60)
                              GTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATC                                                                 <  SRR4302540.40025/94‑1 (MQ=60)
                               TAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCG                                                                >  SRR4302540.5948319/1‑94 (MQ=60)
                                AAGCCGCGCCTACCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGC                                                               <  SRR4302540.8880343/94‑1 (MQ=60)
                                 AGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCC                                                              <  SRR4302540.1202930/94‑1 (MQ=60)
                                 AGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGT‑CAC‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCC                                                              >  SRR4302540.8635474/1‑94 (MQ=60)
                                  GCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCA                                                             <  SRR4302540.5563665/94‑1 (MQ=60)
                                  GCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCA                                                             <  SRR4302540.7126734/94‑1 (MQ=60)
                                  GCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCA                                                             <  SRR4302540.1772839/94‑1 (MQ=60)
                                  ACCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCA                                                             <  SRR4302540.2365047/94‑1 (MQ=60)
                                   CCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAG                                                            <  SRR4302540.6701511/94‑1 (MQ=60)
                                   CCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAG                                                            <  SRR4302540.5518502/94‑1 (MQ=60)
                                   CCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAG                                                            <  SRR4302540.1587789/94‑1 (MQ=60)
                                    CGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGT                                                           <  SRR4302540.6572414/94‑1 (MQ=60)
                                      CGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCC                                                         <  SRR4302540.2592201/94‑1 (MQ=60)
                                      CGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCC                                                         <  SRR4302540.10148166/94‑1 (MQ=60)
                                       GCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCG                                                        >  SRR4302540.2414051/1‑94 (MQ=60)
                                       GCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCG                                                        <  SRR4302540.3911195/94‑1 (MQ=60)
                                        CCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGG                                                       >  SRR4302540.2712538/1‑94 (MQ=60)
                                        CCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGG                                                       >  SRR4302540.3745686/1‑94 (MQ=60)
                                         CTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGT                                                      >  SRR4302540.8213452/1‑94 (MQ=60)
                                         CTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGT                                                      >  SRR4302540.5692336/1‑94 (MQ=60)
                                         CTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGT                                                      >  SRR4302540.1960756/1‑94 (MQ=60)
                                         CTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGT                                                      >  SRR4302540.3200879/1‑94 (MQ=60)
                                         CTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGT                                                      >  SRR4302540.6860749/1‑94 (MQ=60)
                                         CTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGT‑C‑C‑CAAACCCCACGCCAACCAGCACAATATGAATCGCCAGTACGGT                                                      >  SRR4302540.6860750/1‑94 (MQ=60)
                                         CTGACCACTTCAGCGCGTCAAACGGAACCACTGAGCGGGAAAAGAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGT                                                      <  SRR4302540.8254615/94‑1 (MQ=60)
                                          TTCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AGCCCCACGCCAACCAGCACAATATGAATCGCCCGTCCGGTC                                                     <  SRR4302540.6904461/94‑1 (MQ=60)
                                          TGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTC                                                     >  SRR4302540.2207324/1‑94 (MQ=60)
                                          TGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTC                                                     >  SRR4302540.6571840/1‑94 (MQ=60)
                                          TGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTC                                                     >  SRR4302540.6810925/1‑94 (MQ=60)
                                          TGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTC                                                     >  SRR4302540.10162604/1‑94 (MQ=60)
                                           GCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCT                                                    <  SRR4302540.5497487/94‑1 (MQ=60)
                                           GCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCT                                                    <  SRR4302540.5937022/94‑1 (MQ=60)
                                           GCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCT                                                    <  SRR4302540.3606353/94‑1 (MQ=60)
                                           GCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCT                                                    >  SRR4302540.2420681/1‑94 (MQ=60)
                                            CCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCTAAACAGCACAATATGACTCGCCAGGACGGTCTG                                                   >  SRR4302540.3295522/1‑94 (MQ=60)
                                            CCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTG                                                   >  SRR4302540.7497371/1‑94 (MQ=60)
                                             CCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGA                                                  >  SRR4302540.7904367/1‑94 (MQ=60)
                                             CCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGA                                                  >  SRR4302540.3316161/1‑94 (MQ=60)
                                             CCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGA                                                  >  SRR4302540.2866824/1‑94 (MQ=60)
                                             CCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGA                                                  >  SRR4302540.482659/1‑94 (MQ=60)
                                             CCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGA                                                  >  SRR4302540.5449950/1‑94 (MQ=60)
                                              CACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAA                                                 <  SRR4302540.9923090/94‑1 (MQ=60)
                                               ACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAG                                                <  SRR4302540.1697189/94‑1 (MQ=60)
                                               ACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAG                                                <  SRR4302540.9966496/94‑1 (MQ=60)
                                               ACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAG                                                <  SRR4302540.3256641/94‑1 (MQ=60)
                                                CTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGC                                               <  SRR4302540.5427238/94‑1 (MQ=60)
                                                CTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGC                                               <  SRR4302540.7330595/94‑1 (MQ=60)
                                                CTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGC                                               >  SRR4302540.9525047/1‑94 (MQ=60)
                                                CTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGC                                               >  SRR4302540.1655635/1‑94 (MQ=60)
                                                 TTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCC                                              >  SRR4302540.7458906/1‑94 (MQ=60)
                                                 TTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCC                                              >  SRR4302540.2383234/1‑94 (MQ=60)
                                                 TTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCC                                              >  SRR4302540.234607/1‑94 (MQ=60)
                                                 CTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGGGTGC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCC                                              <  SRR4302540.3392111/94‑1 (MQ=60)
                                                  TCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCC                                             >  SRR4302540.1568552/1‑94 (MQ=60)
                                                   CAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCA                                            <  SRR4302540.5804196/94‑1 (MQ=60)
                                                   CAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCA                                            >  SRR4302540.6702683/1‑94 (MQ=60)
                                                    AACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAG                                           >  SRR4302540.8019003/1‑94 (MQ=60)
                                                      CACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCA                                         <  SRR4302540.2731135/94‑1 (MQ=60)
                                                       ACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAA                                        >  SRR4302540.636332/1‑94 (MQ=60)
                                                       ACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAA                                        >  SRR4302540.1881786/1‑94 (MQ=60)
                                                       ACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAA                                        >  SRR4302540.37042/1‑94 (MQ=60)
                                                       ACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAA                                        >  SRR4302540.5975169/1‑94 (MQ=60)
                                                       ACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACAAGAACAAAATAAATGGCCAGCCCGGTCTGAGCCCCAGCAA                                        >  SRR4302540.6522386/1‑94 (MQ=46)
                                                        CTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAAT                                       >  SRR4302540.4439006/1‑94 (MQ=60)
                                                        CTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAAT                                       >  SRR4302540.2707735/1‑94 (MQ=60)
                                                        CTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAAT                                       <  SRR4302540.2807889/94‑1 (MQ=60)
                                                        CTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTATGAAGCCCAGCAAT                                       >  SRR4302540.7099296/1‑94 (MQ=60)
                                                        CTGCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAAT                                       <  SRR4302540.440817/94‑1 (MQ=60)
                                                         TTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATA                                      <  SRR4302540.8531776/94‑1 (MQ=60)
                                                         TTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATA                                      <  SRR4302540.725547/94‑1 (MQ=60)
                                                         CTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATA                                      <  SRR4302540.5172173/94‑1 (MQ=60)
                                                          TCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAG                                     <  SRR4302540.6114165/94‑1 (MQ=60)
                                                          TCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAG                                     <  SRR4302540.7012536/94‑1 (MQ=60)
                                                          TCAAACGCAAGCACTGAGCGGGAAAATACCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAG                                     <  SRR4302540.7012533/94‑1 (MQ=60)
                                                           CCAACGCAAACACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGA                                    <  SRR4302540.4615477/94‑1 (MQ=60)
                                                           CAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGA                                    >  SRR4302540.838499/1‑94 (MQ=60)
                                                           CAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGA                                    >  SRR4302540.838500/1‑94 (MQ=60)
                                                            AAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGAC                                   <  SRR4302540.991640/94‑1 (MQ=60)
                                                            AAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGAC                                   <  SRR4302540.473166/94‑1 (MQ=60)
                                                            AAACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGAC                                   <  SRR4302540.8531920/94‑1 (MQ=60)
                                                             AACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACG                                  >  SRR4302540.7458147/1‑94 (MQ=60)
                                                             AACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACC                                  >  SRR4302540.2726428/1‑94 (MQ=60)
                                                              ACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGC                                 >  SRR4302540.4934947/1‑94 (MQ=60)
                                                              ACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGC                                 >  SRR4302540.3833353/1‑94 (MQ=60)
                                                              ACGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGC                                 >  SRR4302540.1596011/1‑94 (MQ=60)
                                                               CGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCC                                >  SRR4302540.8899463/1‑94 (MQ=60)
                                                               CGCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCC                                >  SRR4302540.9624066/1‑94 (MQ=60)
                                                                GCAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCA                               >  SRR4302540.8297648/1‑94 (MQ=60)
                                                                 CAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCAC                              <  SRR4302540.9176931/94‑1 (MQ=60)
                                                                 CAATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCAC                              >  SRR4302540.4075029/1‑94 (MQ=60)
                                                                  AATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACC                             <  SRR4302540.4312025/94‑1 (MQ=60)
                                                                   ATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCG                            <  SRR4302540.2046113/94‑1 (MQ=60)
                                                                   ATCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCG                            >  SRR4302540.2376267/1‑94 (MQ=60)
                                                                    TCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGC                           >  SRR4302540.5880009/1‑94 (MQ=60)
                                                                    TCACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGACAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGC                           >  SRR4302540.5681622/1‑94 (MQ=60)
                                                                    ACACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGC                           <  SRR4302540.6842590/94‑1 (MQ=60)
                                                                     CACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCG                          <  SRR4302540.8444819/94‑1 (MQ=60)
                                                                     CACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCG                          <  SRR4302540.8883474/94‑1 (MQ=60)
                                                                     CACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCG                          <  SRR4302540.6938437/94‑1 (MQ=60)
                                                                     CACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACACCAACCAGCACAATATGAATCGCCAGTCCGCTCTGAAGACCACCAATAGACGACACCGCG                          >  SRR4302540.8704985/1‑94 (MQ=60)
                                                                      ACTGAGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGC                         >  SRR4302540.2456552/1‑94 (MQ=60)
                                                                       CTGAGCGGTAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCC                        <  SRR4302540.7028187/94‑1 (MQ=60)
                                                                         GAGCGGGAAAATAGCGTCC‑C‑C‑AACCACACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCGACCGCGCCGC                      >  SRR4302540.4536873/1‑94 (MQ=60)
                                                                          AGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCG                     >  SRR4302540.9649749/1‑94 (MQ=60)
                                                                          AGCGGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCG                     <  SRR4302540.4938439/94‑1 (MQ=60)
                                                                             GGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATA                  >  SRR4302540.7799018/1‑94 (MQ=60)
                                                                             GGGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATA                  <  SRR4302540.3201484/94‑1 (MQ=60)
                                                                              GGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAA                 >  SRR4302540.2020968/1‑94 (MQ=60)
                                                                              GGAAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAA                 >  SRR4302540.7771808/1‑94 (MQ=60)
                                                                                AAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAACC               <  SRR4302540.6401124/94‑1 (MQ=60)
                                                                                AAAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAACC               <  SRR4302540.5678299/94‑1 (MQ=60)
                                                                                 AAATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAACCG              >  SRR4302540.7049867/1‑94 (MQ=60)
                                                                                  AATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATATACGCCACCGCGCCGCGATAACCGT             >  SRR4302540.4294834/1‑94 (MQ=60)
                                                                                  AATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAACCGT             >  SRR4302540.9440265/1‑94 (MQ=60)
                                                                                  AATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAACCGT             >  SRR4302540.5633349/1‑94 (MQ=60)
                                                                                  AATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAACCGG             >  SRR4302540.2570145/1‑94 (MQ=60)
                                                                                   ATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAACCGTG            <  SRR4302540.4083592/94‑1 (MQ=60)
                                                                                   ATAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAACCGTG            >  SRR4302540.2814035/1‑94 (MQ=60)
                                                                                   ATAGCGT‑C‑C‑CTAGCCCCACGCCACCCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAACCGTG            <  SRR4302540.580548/94‑1 (MQ=60)
                                                                                    TAGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAACCGTGG           >  SRR4302540.9149824/1‑94 (MQ=60)
                                                                                     AGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAACCGTGGT          <  SRR4302540.4982944/94‑1 (MQ=60)
                                                                                     AGCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATACGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAACCGTGGT          <  SRR4302540.833488/94‑1 (MQ=60)
                                                                                      GCGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAACCGTGGTT         <  SRR4302540.813934/94‑1 (MQ=60)
                                                                                       CGTCC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAACCGTGGTTG        <  SRR4302540.2566589/94‑1 (MQ=60)
                                                                                        gtcC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAACCGTGGTTGA       >  SRR4302540.1275242/4‑94 (MQ=60)
                                                                                         tcC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAACCGTGGTTGAG      <  SRR4302540.657619/92‑1 (MQ=60)
                                                                                         tcC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAACCGTGGTTGAG      >  SRR4302540.1393561/3‑94 (MQ=60)
                                                                                         tcC‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAACCGTGGTTGAG      >  SRR4302540.2920729/3‑94 (MQ=60)
                                                                                         C‑C‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAACCGTGGTTGAGC     >  SRR4302540.3049893/1‑94 (MQ=60)
                                                                                         C‑C‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAACCGTGGTTGAGC     <  SRR4302540.3245406/94‑1 (MQ=60)
                                                                                         C‑C‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAACCGTGGTTGAGC     <  SRR4302540.5031985/94‑1 (MQ=60)
                                                                                         C‑C‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAACCGTGGTTGAGC     <  SRR4302540.5031986/94‑1 (MQ=60)
                                                                                           C‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAACCGTGGTTGAGCG    <  SRR4302540.911322/94‑1 (MQ=60)
                                                                                           C‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAACCGTGGTTGAGCG    <  SRR4302540.9669577/94‑1 (MQ=60)
                                                                                             C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAACCGTGGTTGAGCGA   >  SRR4302540.1605435/1‑94 (MQ=60)
                                                                                             C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAACCGTGGTTGAGCGA   <  SRR4302540.660922/94‑1 (MQ=60)
                                                                                             C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAACCGTGGTTGAGCGA   >  SRR4302540.4222449/1‑94 (MQ=60)
                                                                                               C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAACCGTGGTTGAGCGAG  <  SRR4302540.7661382/94‑1 (MQ=60)
                                                                                               C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAACCGTGGTTGAGCGAG  <  SRR4302540.3261059/94‑1 (MQ=60)
                                                                                               |                                                                                              
GCGCCACTGCTGGATTCCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGT‑C‑C‑C‑AACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAACCGTGGTTGAGCGAG  >  NC_000913/4006391‑4006576

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑