Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,366,832 T→C M387V (ATG→GTG)  yjeH ← putative transport

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,366,8320TC99.2% 1224.1 / ‑2.1 385M387V (ATG→GTG) yjeHputative transport
Reads supporting (aligned to +/- strand):  ref base T (1/2);  new base C (188/194);  total (189/196)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.61e-01

Only 100 of 401 total aligned reads displayed.

TTATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCATTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCCAGCATGCATA  >  NC_000913/4366742‑4366921
                                                                                          |                                                                                         
 tttGCCATTTTCCGGCGTTTTTCGTTTTCGCAGCAAGAGCCGTAATCCCGCCAGCATGATCAGCGCATAGAGTCTTTTCCAGCCGACCACTGc                                                                                        >  2:869771/3‑93 (MQ=255)
 tATGCGATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGc                                                                                        <  2:1667150/93‑1 (MQ=255)
   tGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCCGCGCATAGAGCCTTTTCCAGCGGACCACTGccc                                                                                      >  1:3507733/1‑92 (MQ=255)
   tGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCa                                                                                      <  2:8396419/93‑1 (MQ=255)
   tGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCa                                                                                      <  2:6225919/93‑1 (MQ=255)
   tGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCa                                                                                      <  1:7293893/93‑1 (MQ=255)
    gCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAg                                                                                     <  2:3661534/93‑1 (MQ=255)
      cATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTa                                                                                   >  1:5502272/1‑93 (MQ=255)
       aTTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTaa                                                                                  <  1:8301364/93‑1 (MQ=255)
        ttttCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAAc                                                                                 >  2:7825256/1‑93 (MQ=255)
        ttttCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAAc                                                                                 >  2:4755063/1‑93 (MQ=255)
        ttttCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAAc                                                                                 >  2:149181/1‑93 (MQ=255)
        ttttCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAAc                                                                                 >  1:7586252/1‑93 (MQ=255)
        ttttCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAAc                                                                                 >  1:7502915/1‑93 (MQ=255)
        ttttCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAAc                                                                                 >  1:5179577/1‑93 (MQ=255)
          ttCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAg                                                                               <  1:1196590/93‑1 (MQ=255)
           tCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGa                                                                              >  1:9777753/1‑93 (MQ=255)
               gCGTTTTTCGTTTTGGAAACAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGc                                                                          <  1:10023166/93‑1 (MQ=255)
                cttttttCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCa                                                                         <  2:7477373/91‑1 (MQ=255)
                cGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCa                                                                         <  1:2058262/93‑1 (MQ=255)
                  tttttCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCTTGATCAGCGCTTAGAGACTTTTCCAGCGGCCCACTGCCAGTAACAGAACGCATa                                                                       >  2:2542170/1‑93 (MQ=255)
                   ttttCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATaa                                                                      <  2:7055008/93‑1 (MQ=255)
                   tgttCGTTTTGGCAGCAACAGCCATACCCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATaa                                                                      <  1:291962/91‑1 (MQ=255)
                    tttCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAAc                                                                     >  1:4617999/1‑93 (MQ=255)
                     ttCGTTTTGGCAGCACCAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACa                                                                    <  2:5034579/93‑1 (MQ=255)
                       cGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGc                                                                  <  2:9142828/93‑1 (MQ=255)
                        gTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGcc                                                                 >  2:203359/1‑93 (MQ=255)
                        gTTTGGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACGGAACGCATAACAGcc                                                                 <  1:4955669/93‑1 (MQ=255)
                          tttGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCg                                                               >  2:4573836/1‑93 (MQ=255)
                              gcagcaACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCaa                                                           >  1:6437881/1‑93 (MQ=255)
                                agcaACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAacc                                                         <  1:609626/93‑1 (MQ=255)
                                 gcaACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAacca                                                        <  1:1493144/93‑1 (MQ=255)
                                  gaccAGCCATACCCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAaccac                                                       <  2:8257321/90‑1 (MQ=255)
                                  caACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAaccac                                                       <  1:1711730/93‑1 (MQ=255)
                                   aaCAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAaccacc                                                      >  1:8048828/1‑93 (MQ=255)
                                    aCAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCg                                                     >  1:6878132/1‑93 (MQ=255)
                                    aCAGCAATACCCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCg                                                     <  2:9702722/93‑1 (MQ=255)
                                     cAGCCATACCCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCCGTAACAGAACGCATAACAGCCCGCCAACCACCGc                                                    <  2:6371118/93‑1 (MQ=255)
                                       gCCATAGCCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCa                                                  >  2:7209481/1‑93 (MQ=255)
                                       gCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCa                                                  <  1:3112999/93‑1 (MQ=255)
                                       gCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCa                                                  >  2:3062448/1‑93 (MQ=255)
                                       gCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCa                                                  <  2:8504305/93‑1 (MQ=255)
                                        ccATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCag                                                 >  2:3909776/1‑93 (MQ=255)
                                          aTACCCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCagta                                               <  2:3359493/93‑1 (MQ=255)
                                          aTAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCagta                                               >  1:4364793/1‑93 (MQ=255)
                                          aTAACCCCGCCAGCATGATCAGCGCATAGAGACTTTCCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCagta                                               <  1:7347987/93‑1 (MQ=255)
                                           tAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCagtag                                              >  2:3842742/1‑93 (MQ=255)
                                           tAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCagtag                                              >  1:2427899/1‑93 (MQ=255)
                                           tAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCagtag                                              >  1:1358833/1‑93 (MQ=255)
                                           tAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCagtag                                              >  1:7048164/1‑93 (MQ=255)
                                           tAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCagtag                                              >  1:2676226/1‑93 (MQ=255)
                                            acccccGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCagtagt                                             <  2:9414339/91‑1 (MQ=255)
                                             aCCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTc                                            <  1:8594983/93‑1 (MQ=255)
                                              ccccGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCg                                           <  1:9954497/93‑1 (MQ=255)
                                               ctcGCCAGCATGATCAGCTCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGa                                          <  1:9483847/91‑1 (MQ=255)
                                               cccGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGa                                          <  1:4725006/93‑1 (MQ=255)
                                                ccGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGAt                                         >  2:7714013/1‑93 (MQ=255)
                                                 cGCCAGCATGATCAGCGCAGAGAGACTTTTCCAGACGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATa                                        <  2:6147296/93‑1 (MQ=255)
                                                  gcgaGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATaa                                       <  1:612691/90‑1 (MQ=255)
                                                  gCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATaa                                       <  1:5081730/93‑1 (MQ=255)
                                                   ccAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAAc                                      >  2:5747544/1‑93 (MQ=255)
                                                   ccAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAAc                                      >  1:3896023/1‑93 (MQ=255)
                                                    cAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACg                                     <  1:8840896/93‑1 (MQ=255)
                                                     aGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACgc                                    >  2:3415052/1‑92 (MQ=255)
                                                     aGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGt                                    <  2:2815597/93‑1 (MQ=255)
                                                       cATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTcc                                  >  2:8069282/1‑93 (MQ=255)
                                                        aTGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCt                                 <  2:4347801/93‑1 (MQ=255)
                                                        aTGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCt                                 <  2:5858415/93‑1 (MQ=255)
                                                         tGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCtt                                >  2:3512367/1‑93 (MQ=255)
                                                         tGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCtt                                >  2:9579646/1‑93 (MQ=255)
                                                         tGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCACGCCAACCACCGCCAGTAGTCGATAACGTCCtt                                >  1:1791029/1‑93 (MQ=255)
                                                         tGATCAGCGCATAGAGACTTTTCAAGCCGACCACTGCCAGCAACAGAACGCATAACAGCCCCCCAACCACCGCCAGTAGTCGATAACGTCCtt                                >  1:6541194/1‑93 (MQ=255)
                                                          gATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTg                               >  2:3266889/1‑93 (MQ=255)
                                                           aTCAGCGCATAGAGCCTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTGCTTGc                              <  2:5983160/93‑1 (MQ=255)
                                                            tCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCa                             >  2:3560542/1‑93 (MQ=255)
                                                             cAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCaa                            <  1:3404224/93‑1 (MQ=255)
                                                             cAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCaa                            <  1:6647225/93‑1 (MQ=255)
                                                                ggcATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCaataa                         <  1:3654030/92‑1 (MQ=255)
                                                                cgcATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCaataa                         <  1:5944793/93‑1 (MQ=255)
                                                                 gcATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCaataat                        <  1:9273291/93‑1 (MQ=255)
                                                                  cATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAAtt                       >  1:3179777/1‑93 (MQ=255)
                                                                    tAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTa                     <  2:175741/93‑1 (MQ=255)
                                                                    tAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTa                     <  2:1598429/93‑1 (MQ=255)
                                                                     agagACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTAc                    >  2:9748675/1‑93 (MQ=255)
                                                                     agagACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTAc                    <  2:8811338/93‑1 (MQ=255)
                                                                     agagACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTAc                    <  1:1537346/93‑1 (MQ=255)
                                                                      aataCTTTTCCCGCCGACCACTGCCAGTAACAGAACGCATAACATCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACa                   <  2:2244041/90‑1 (MQ=255)
                                                                       agaCTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAg                  >  2:1226428/1‑93 (MQ=255)
                                                                        gaCTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGc                 <  1:7818908/93‑1 (MQ=255)
                                                                        gaCTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGc                 >  1:5389127/1‑93 (MQ=255)
                                                                         aCTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGcc                >  2:1868810/1‑93 (MQ=255)
                                                                          cTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCt               >  2:532907/1‑93 (MQ=255)
                                                                            tttCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGc             <  2:4158044/93‑1 (MQ=255)
                                                                              tCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCCa           <  2:7645082/93‑1 (MQ=255)
                                                                                 aGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCCAgca        <  2:6802678/93‑1 (MQ=255)
                                                                                     gACCACTGCCAGTAACAGACCGCATAACCGCCCGCCAACCACCGCCAGTAGTCGATAACGACCTTGCAATAATTTACAGCCTGCCAgcatgca    <  1:8977247/93‑1 (MQ=255)
                                                                                      aCCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCCAgcatgcat   >  1:9148909/1‑93 (MQ=255)
                                                                                      aCCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCCAgcatgcat   >  1:5761895/1‑93 (MQ=255)
                                                                                      aCCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCCAgcatgcat   >  2:6671841/1‑93 (MQ=255)
                                                                                      aCCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCCAgcatgcaa   >  2:8210768/1‑92 (MQ=255)
                                                                                          |                                                                                         
TTATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCATTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCCAGCATGCATA  >  NC_000913/4366742‑4366921

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 216 total aligned reads displayed.
TGGTTATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCATTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCCAGCATGCATAACAG  >  NC_000913/4366739‑4366925
                                                                                             |                                                                                             
TGGTTATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCAC                                                                                               <  SRR4302540.8571048/94‑1 (MQ=60)
TGGTTATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCAC                                                                                               <  SRR4302540.4696161/94‑1 (MQ=60)
TGGTTATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCAC                                                                                               <  SRR4302540.4533107/94‑1 (MQ=60)
TGGTTATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCAC                                                                                               >  SRR4302540.883515/1‑94 (MQ=60)
TGGTTATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCAC                                                                                               <  SRR4302540.2650147/94‑1 (MQ=60)
TGGTTATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCAC                                                                                               <  SRR4302540.6961995/94‑1 (MQ=60)
TGGTTATGCCATTTTCCGGCGTTGTTCGTTTTGGCATCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCAC                                                                                               >  SRR4302540.1864254/1‑94 (MQ=60)
 GGTTATGCCTTTTTCGGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACT                                                                                              <  SRR4302540.1068/94‑1 (MQ=60)
 GGTTATGCCATTTTCCGGCGTTTTTGGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACT                                                                                              <  SRR4302540.953679/94‑1 (MQ=60)
 GGTTATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACT                                                                                              <  SRR4302540.7413884/94‑1 (MQ=60)
 GGTTATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACT                                                                                              <  SRR4302540.8295371/94‑1 (MQ=60)
 GGTTATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACT                                                                                              >  SRR4302540.4123462/1‑94 (MQ=60)
 GGTTATGCCATTTTCCGGCGTTTTGCGTTTGGGCATCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACT                                                                                              <  SRR4302540.1069/94‑1 (MQ=60)
  GTTATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTG                                                                                             >  SRR4302540.4978944/1‑94 (MQ=60)
    TATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCC                                                                                           <  SRR4302540.7649263/94‑1 (MQ=60)
    TATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCC                                                                                           >  SRR4302540.4560826/1‑94 (MQ=60)
    TATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCC                                                                                           >  SRR4302540.7513938/1‑94 (MQ=60)
    TATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCC                                                                                           >  SRR4302540.1707864/1‑94 (MQ=60)
     ATGCCATTTTCCGGCGTTTTTCTTTTTGGCAGCAACAGCCATAACCGCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCA                                                                                          <  SRR4302540.6208813/94‑1 (MQ=60)
     ATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCCGCGCATAGAGCCTTTTCCAGCGGACCACTGCCC                                                                                          >  SRR4302540.3545944/1‑94 (MQ=60)
     ATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCA                                                                                          >  SRR4302540.3545943/1‑94 (MQ=60)
     ATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCA                                                                                          <  SRR4302540.7934772/94‑1 (MQ=60)
      TGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCACCAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAG                                                                                         <  SRR4302540.5210770/94‑1 (MQ=60)
      TGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAG                                                                                         >  SRR4302540.9074134/1‑94 (MQ=60)
      TGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAG                                                                                         <  SRR4302540.8694953/94‑1 (MQ=60)
      TGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAG                                                                                         <  SRR4302540.7375296/94‑1 (MQ=60)
        CCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTA                                                                                       >  SRR4302540.6910013/1‑94 (MQ=60)
        CCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTA                                                                                       >  SRR4302540.5562874/1‑94 (MQ=60)
         CATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAA                                                                                      >  SRR4302540.157445/1‑94 (MQ=60)
          ATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAAC                                                                                     <  SRR4302540.664766/94‑1 (MQ=60)
          ATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAAC                                                                                     >  SRR4302540.5235949/1‑94 (MQ=60)
          ATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAAC                                                                                     >  SRR4302540.7671440/1‑94 (MQ=60)
          ATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAAC                                                                                     >  SRR4302540.7586763/1‑94 (MQ=60)
          ATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAAC                                                                                     <  SRR4302540.8397749/94‑1 (MQ=60)
            TTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAG                                                                                   <  SRR4302540.4025575/94‑1 (MQ=60)
            TTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAG                                                                                   >  SRR4302540.8355981/1‑94 (MQ=60)
            TTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAG                                                                                   <  SRR4302540.5016814/94‑1 (MQ=60)
             TTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGA                                                                                  <  SRR4302540.1208903/94‑1 (MQ=60)
             TTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGA                                                                                  >  SRR4302540.9892366/1‑94 (MQ=60)
               CCGGCGTTTTTCGTTTTGGCAGCAACAGCCATCACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGACGACCACTGCCCGTAACAGAAC                                                                                >  SRR4302540.2901101/1‑94 (MQ=60)
               CCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGGTCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAAC                                                                                >  SRR4302540.2901100/1‑94 (MQ=60)
               CCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAAC                                                                                <  SRR4302540.2003194/94‑1 (MQ=60)
                CGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACG                                                                               <  SRR4302540.5453831/94‑1 (MQ=60)
                CGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACG                                                                               <  SRR4302540.2957248/94‑1 (MQ=60)
                  GCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCA                                                                             >  SRR4302540.9292917/1‑94 (MQ=60)
                  GCGTTTTTCGTTTTGGAAACAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCA                                                                             <  SRR4302540.10139800/94‑1 (MQ=60)
                   CGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGCCTTTTCCAGCCGACCACTGCCAGTAACAGAACGCAT                                                                            >  SRR4302540.3481137/1‑94 (MQ=60)
                   CGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCAT                                                                            <  SRR4302540.2080416/94‑1 (MQ=60)
                   CGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCAT                                                                            <  SRR4302540.3163462/94‑1 (MQ=60)
                   CGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCAT                                                                            >  SRR4302540.3735310/1‑94 (MQ=60)
                   CGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCAT                                                                            >  SRR4302540.3481138/1‑94 (MQ=60)
                    GTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATA                                                                           <  SRR4302540.8750525/94‑1 (MQ=60)
                    GTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATA                                                                           >  SRR4302540.1078455/1‑94 (MQ=60)
                     TTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAA                                                                          <  SRR4302540.8423824/94‑1 (MQ=60)
                     GTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAA                                                                          <  SRR4302540.3578682/94‑1 (MQ=60)
                      TTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAAC                                                                         >  SRR4302540.336181/1‑94 (MQ=60)
                      TTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAAC                                                                         >  SRR4302540.4667519/1‑94 (MQ=60)
                      TTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAAC                                                                         >  SRR4302540.4667521/1‑94 (MQ=60)
                      TTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAAC                                                                         <  SRR4302540.7551642/94‑1 (MQ=60)
                      TGTTCGTTTTGGCAGCAACAGCCATACCCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAAC                                                                         <  SRR4302540.294847/94‑1 (MQ=60)
                        TTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGCTCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCCATCACAGAACGCATAACAG                                                                       >  SRR4302540.3854077/1‑94 (MQ=60)
                        TTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAG                                                                       <  SRR4302540.6632746/94‑1 (MQ=60)
                         TCTTTTTGGAAGCAACAGCCATACCCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGC                                                                      <  SRR4302540.7429436/94‑1 (MQ=60)
                          CGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCC                                                                     >  SRR4302540.9614841/1‑94 (MQ=60)
                          CGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCC                                                                     >  SRR4302540.2353482/1‑94 (MQ=60)
                          CGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCACTAACAGAACGCATAACAGCC                                                                     <  SRR4302540.9857248/94‑1 (MQ=60)
                           GTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCC                                                                    <  SRR4302540.5009221/94‑1 (MQ=60)
                           GTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCC                                                                    >  SRR4302540.148150/1‑94 (MQ=60)
                           GTTTGGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACGGAACGCATAACAGCCC                                                                    <  SRR4302540.5009220/94‑1 (MQ=60)
                            TTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCG                                                                   <  SRR4302540.1259571/94‑1 (MQ=60)
                              TTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCC                                                                 <  SRR4302540.805666/94‑1 (MQ=60)
                                GGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAA                                                               >  SRR4302540.6509533/1‑94 (MQ=60)
                                   AGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCC                                                            >  SRR4302540.7877034/1‑94 (MQ=60)
                                   AGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCA                                                            <  SRR4302540.616143/94‑1 (MQ=60)
                                    caAACAGCCATACCCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCAC                                                           <  SRR4302540.5940036/92‑1 (MQ=60)
                                    actaacGCCATAACGCCGCCATTATGATCAGCGCATAGAGACTTTGCCAGCCGACCACTGCCATTAACAGAACGCATAACAGCCCGCCAACCAC                                                           <  SRR4302540.5940037/88‑1 (MQ=60)
                                    GCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCAC                                                           <  SRR4302540.4530468/94‑1 (MQ=60)
                                    GCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCAC                                                           <  SRR4302540.1509572/94‑1 (MQ=60)
                                     CAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACC                                                          >  SRR4302540.6536929/1‑94 (MQ=60)
                                     CAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACC                                                          >  SRR4302540.8142322/1‑94 (MQ=60)
                                     CAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACC                                                          <  SRR4302540.1730220/94‑1 (MQ=60)
                                      AACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCG                                                         >  SRR4302540.6954371/1‑94 (MQ=60)
                                       ACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGC                                                        <  SRR4302540.6044589/94‑1 (MQ=60)
                                        CAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCC                                                       >  SRR4302540.6594897/1‑94 (MQ=60)
                                        CAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCC                                                       >  SRR4302540.6729405/1‑94 (MQ=60)
                                         AGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCA                                                      >  SRR4302540.4195048/1‑94 (MQ=60)
                                          GCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAG                                                     <  SRR4302540.3147045/94‑1 (MQ=60)
                                          GCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAG                                                     <  SRR4302540.609931/94‑1 (MQ=60)
                                          GCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAG                                                     <  SRR4302540.5485754/94‑1 (MQ=60)
                                          GCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAG                                                     <  SRR4302540.2471942/94‑1 (MQ=60)
                                          GCCAAAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAG                                                     <  SRR4302540.609930/94‑1 (MQ=60)
                                           CCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGT                                                    <  SRR4302540.8319383/94‑1 (MQ=60)
                                            CATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTA                                                   >  SRR4302540.4412234/1‑94 (MQ=60)
                                            CATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTA                                                   >  SRR4302540.9898198/1‑94 (MQ=60)
                                             ATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAG                                                  >  SRR4302540.10143428/1‑94 (MQ=60)
                                             ATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAG                                                  >  SRR4302540.9596205/1‑94 (MQ=60)
                                             ATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAG                                                  >  SRR4302540.858983/1‑94 (MQ=60)
                                             ATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAG                                                  >  SRR4302540.7126547/1‑94 (MQ=60)
                                             ATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAG                                                  >  SRR4302540.6587182/1‑94 (MQ=60)
                                             ATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAG                                                  >  SRR4302540.1373164/1‑94 (MQ=60)
                                             ATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAG                                                  >  SRR4302540.2705194/1‑94 (MQ=60)
                                             ATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAG                                                  >  SRR4302540.2454055/1‑94 (MQ=60)
                                             ATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTCCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAG                                                  <  SRR4302540.7429965/94‑1 (MQ=60)
                                               ACCCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTC                                                <  SRR4302540.3894972/94‑1 (MQ=60)
                                               ACCCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTC                                                <  SRR4302540.5186955/94‑1 (MQ=60)
                                               AACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTC                                                <  SRR4302540.4711356/94‑1 (MQ=60)
                                                ACCCGCCCAGAATGATCAGCGCATAGAGCCTTTTACAGCCGCCCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCG                                               <  SRR4302540.9401168/94‑1 (MQ=60)
                                                ACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCG                                               <  SRR4302540.8694893/94‑1 (MQ=60)
                                                 CCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGA                                              <  SRR4302540.10070693/94‑1 (MQ=60)
                                                  CTCGCCAGCATGATCAGCTCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGAT                                             <  SRR4302540.9596294/94‑1 (MQ=60)
                                                  CCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGAT                                             >  SRR4302540.5681413/1‑94 (MQ=60)
                                                  CCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGAT                                             <  SRR4302540.1354659/94‑1 (MQ=60)
                                                  CCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGAT                                             <  SRR4302540.4775475/94‑1 (MQ=60)
                                                  CCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGAT                                             <  SRR4302540.6475217/94‑1 (MQ=60)
                                                  CCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGAA                                             >  SRR4302540.3016992/1‑94 (MQ=60)
                                                   CCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGCAGTCGATA                                            >  SRR4302540.3299873/1‑94 (MQ=60)
                                                     GCGAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAAC                                          <  SRR4302540.619232/94‑1 (MQ=60)
                                                     GCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAAC                                          <  SRR4302540.166991/94‑1 (MQ=60)
                                                     GCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAAC                                          >  SRR4302540.1797103/1‑94 (MQ=60)
                                                     GCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAAC                                          <  SRR4302540.2010282/94‑1 (MQ=60)
                                                     GCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAAC                                          >  SRR4302540.3938305/1‑94 (MQ=60)
                                                     GCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAAC                                          <  SRR4302540.2494334/94‑1 (MQ=60)
                                                     GCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAAC                                          >  SRR4302540.278352/1‑94 (MQ=60)
                                                     GCCAGCATGATCAGCGCATAGAGACTGTTACAGCCGACCACAGCCAGTAACAGACCGCATCACGGCCCGCCAACCACCGCCAGTAGTCGATAAC                                          <  SRR4302540.7890097/94‑1 (MQ=60)
                                                     GCAAGCATGATCAGCGCATAGAGACTTTGCCAGCCGACCACTGCCAGTAACAGAGGGCATAACAGCCCGCGAACCACCGCCAGTAGTCGATACC                                          <  SRR4302540.102752/94‑1 (MQ=60)
                                                      CCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACG                                         <  SRR4302540.9957029/94‑1 (MQ=60)
                                                      CCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACG                                         >  SRR4302540.5547296/1‑94 (MQ=60)
                                                       CAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGT                                        <  SRR4302540.8943153/94‑1 (MQ=60)
                                                       CAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGT                                        <  SRR4302540.6205277/94‑1 (MQ=60)
                                                        AGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTC                                       >  SRR4302540.9197572/1‑94 (MQ=60)
                                                        AGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTC                                       >  SRR4302540.1234263/1‑94 (MQ=60)
                                                         GCATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCC                                      <  SRR4302540.9255995/94‑1 (MQ=60)
                                                          CATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCT                                     <  SRR4302540.9416010/94‑1 (MQ=60)
                                                          CATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCT                                     >  SRR4302540.8958827/1‑94 (MQ=60)
                                                          CATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCT                                     <  SRR4302540.3172583/94‑1 (MQ=60)
                                                           ATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTT                                    <  SRR4302540.4881074/94‑1 (MQ=60)
                                                           ATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTT                                    >  SRR4302540.8031808/1‑94 (MQ=60)
                                                           ATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTT                                    >  SRR4302540.5103412/1‑94 (MQ=60)
                                                           ATGATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCACGCCAACCACCGCCAGTAGTCGATAACGTCCTT                                    >  SRR4302540.1810494/1‑94 (MQ=60)
                                                           ATGATCAGCGCATAGAGACTTTTCAAGCCGACCACTGCCAGCAACAGAACGCATAACAGCCCCCCAACCACCGCCAGTAGTCGATAACGTCCTT                                    >  SRR4302540.6613779/1‑94 (MQ=60)
                                                            TGATCAGCGCATAGAGACTTTTCCAGCCGACCATTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTG                                   >  SRR4302540.9383147/1‑94 (MQ=60)
                                                             GATCAGCGCATGGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCACCCACCGCCAGTAGTCGATAACGTCCTTGC                                  <  SRR4302540.9672308/94‑1 (MQ=60)
                                                             GATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGC                                  <  SRR4302540.3107323/94‑1 (MQ=60)
                                                              ATCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCA                                 <  SRR4302540.3663535/94‑1 (MQ=60)
                                                               TCAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAA                                <  SRR4302540.7605951/94‑1 (MQ=60)
                                                                CAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAAT                               <  SRR4302540.6720763/94‑1 (MQ=60)
                                                                CAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAAT                               <  SRR4302540.3441330/94‑1 (MQ=60)
                                                                CAGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAAT                               >  SRR4302540.7419594/1‑94 (MQ=60)
                                                                 AGCGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATA                              >  SRR4302540.3209495/1‑94 (MQ=60)
                                                                   CGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAAT                            >  SRR4302540.6970605/1‑94 (MQ=60)
                                                                   CGCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAAT                            <  SRR4302540.6010508/94‑1 (MQ=60)
                                                                    GCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATT                           <  SRR4302540.9384168/94‑1 (MQ=60)
                                                                    GCATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATT                           >  SRR4302540.3214327/1‑94 (MQ=60)
                                                                     CATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTT                          <  SRR4302540.2150512/94‑1 (MQ=60)
                                                                     CATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTT                          <  SRR4302540.417929/94‑1 (MQ=60)
                                                                     CATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTT                          >  SRR4302540.1857045/1‑94 (MQ=60)
                                                                     CATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTT                          >  SRR4302540.1735161/1‑94 (MQ=60)
                                                                     CATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTT                          >  SRR4302540.1521821/1‑94 (MQ=60)
                                                                     CATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTT                          >  SRR4302540.1521820/1‑94 (MQ=60)
                                                                      ATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTA                         >  SRR4302540.5766734/1‑94 (MQ=60)
                                                                      ATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTA                         >  SRR4302540.7365051/1‑94 (MQ=60)
                                                                      ATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTA                         >  SRR4302540.106819/1‑94 (MQ=60)
                                                                      ATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTA                         >  SRR4302540.7729095/1‑94 (MQ=60)
                                                                      ATAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTA                         >  SRR4302540.4697933/1‑94 (MQ=60)
                                                                       TAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTAC                        <  SRR4302540.5143721/94‑1 (MQ=60)
                                                                       TAGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTAC                        >  SRR4302540.779146/1‑94 (MQ=60)
                                                                        AGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACA                       >  SRR4302540.7541685/1‑94 (MQ=60)
                                                                        AGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACA                       <  SRR4302540.1554347/94‑1 (MQ=60)
                                                                        AGAGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACA                       <  SRR4302540.7421609/94‑1 (MQ=60)
                                                                        AGAGACTTTTCCAGCCGACCACGTCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACA                       <  SRR4302540.843573/94‑1 (MQ=60)
                                                                          AGACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGC                     >  SRR4302540.5448392/1‑94 (MQ=60)
                                                                           GACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCC                    <  SRR4302540.7910281/94‑1 (MQ=60)
                                                                            ACTTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCT                   <  SRR4302540.5660792/94‑1 (MQ=60)
                                                                             CTTGTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTG                  <  SRR4302540.3558399/94‑1 (MQ=60)
                                                                              TTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGC                 >  SRR4302540.707853/1‑94 (MQ=60)
                                                                              TTTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGC                 >  SRR4302540.5827599/1‑94 (MQ=60)
                                                                               TTTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCC                <  SRR4302540.1486042/94‑1 (MQ=60)
                                                                                TTCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCCA               <  SRR4302540.7039483/94‑1 (MQ=60)
                                                                                 TCCAGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCCAG              <  SRR4302540.5841975/94‑1 (MQ=60)
                                                                                    AGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCCAGCAT           >  SRR4302540.537543/1‑94 (MQ=60)
                                                                                    AGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCCAGCAT           <  SRR4302540.5372899/94‑1 (MQ=60)
                                                                                    AGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCCAGCAT           <  SRR4302540.9121034/94‑1 (MQ=60)
                                                                                    AGCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCCAGCAT           <  SRR4302540.5308993/94‑1 (MQ=60)
                                                                                     GCCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCCAGCATG          >  SRR4302540.4927533/1‑94 (MQ=60)
                                                                                      CCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCCAGCATGC         >  SRR4302540.9382324/1‑94 (MQ=60)
                                                                                      CCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCCAGCATGC         >  SRR4302540.1534329/1‑94 (MQ=60)
                                                                                      CCGACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCCAGCATGC         >  SRR4302540.3223230/1‑94 (MQ=60)
                                                                                       CGACCACTACCAGTAACAGACCGCAAAACCGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCCAGCATGCA        <  SRR4302540.2182814/94‑1 (MQ=60)
                                                                                        GACCACTGCCAGTAACAGACCGCATAACCGCCCGCCAACCACCGCCAGTAGTCGATAACGACCTTGCAATAATTTACAGCCTGCCAGCATGCAT       <  SRR4302540.9084114/94‑1 (MQ=60)
                                                                                        GACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCCAGCATGCAT       <  SRR4302540.6168949/94‑1 (MQ=60)
                                                                                        GACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCCAGCATGCAT       <  SRR4302540.7351667/94‑1 (MQ=60)
                                                                                        GACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCCAGCATGCAT       >  SRR4302540.5825512/1‑94 (MQ=60)
                                                                                        GACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCCAGCATGCAT       >  SRR4302540.9006288/1‑94 (MQ=60)
                                                                                        GACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCCAGCATGCAT       >  SRR4302540.9258777/1‑94 (MQ=60)
                                                                                        CACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCCAGCATGCAT       <  SRR4302540.6168950/94‑1 (MQ=60)
                                                                                         ACCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCCAGCATGCATA      >  SRR4302540.680380/1‑94 (MQ=60)
                                                                                          CCACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCCAGCATGCATAA     >  SRR4302540.9930318/1‑94 (MQ=60)
                                                                                           CACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCCAGCATGCATAAC    >  SRR4302540.8940854/1‑94 (MQ=60)
                                                                                           CACTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCCAGCATGCATAAC    >  SRR4302540.6756932/1‑94 (MQ=60)
                                                                                             CTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCCAGCATGCATAACAG  <  SRR4302540.8505179/94‑1 (MQ=60)
                                                                                             |                                                                                             
TGGTTATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCATTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCTGCCAGCATGCATAACAG  >  NC_000913/4366739‑4366925

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑