Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
862,272 |
T→C |
T164A (ACT→GCT) |
ybiY ← |
putative pyruvate formate‑lyase activating enzyme 2 |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 862,272 | 0 | T | C | 100.0%
| 702.8
/ NA
| 217 | T164A (ACT→GCT) | ybiY | putative pyruvate formate‑lyase activating enzyme 2 |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (119/98); total (119/98) |
Only 100 of 221 total aligned reads displayed.
CGTGTTTTAAATCGGCAAGAAACAGATCGATATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGTATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATAAAGGGCTCACCACCCGAAAGCGTTAAACCGC > NC_000913/862182‑862361
|
gtgtTTTAAATCGGCAAGAAACAGATCGATATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATg > 2:3620276/1‑93 (MQ=255)
gtgtTTTAAATCGGCAAGAAACAGATCGATATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATg > 1:2153927/1‑93 (MQ=255)
tttttAAATCGGCAAGAAACAGATCGATATAGGGCAGAGAAGGGGCGATATATTTCCACGGCGCATGCAGACAGGTTTCTACCGCAGCATGaa < 2:1299442/92‑1 (MQ=255)
gtTTTAAATCGGCAAGAAACAGGTCGATATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGaa > 1:1600990/1‑93 (MQ=255)
gtTTTAAATCGGCAAGAAACAGATCGATATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGaa > 1:3726598/1‑93 (MQ=255)
gtTTTAAATCGGCAAGAAACAGATCGATATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGaa < 2:5624267/93‑1 (MQ=255)
gtTTTAAAGCGGCAAGAAACAGATCGATATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTGCCGCAGCATGaa < 2:2605347/93‑1 (MQ=255)
ttAAATCGGCAAGAAACAGATCGATATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAAtgc < 2:4024844/93‑1 (MQ=255)
aTCGGCAAGAAACAGATCGATATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAAtgcctgc > 1:1488568/1‑93 (MQ=255)
cGGCAAGAAACAGATCGATATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATgcctgcct < 1:971983/93‑1 (MQ=255)
cAAGAAACAGATCGATATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGt > 1:440914/1‑93 (MQ=255)
aaGAAACAGATCGATATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGtg > 1:5383719/1‑93 (MQ=255)
aaGAAACAGATCGATATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGtg > 2:3658609/1‑93 (MQ=255)
aGAAACAGATCGATATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGtgg > 1:4469981/1‑93 (MQ=255)
aGAAACAGATCGATATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGtgg > 1:6097680/1‑93 (MQ=255)
aGAAACAGATCGATATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGtgg < 1:1986817/93‑1 (MQ=255)
aGAAACAGATCGATATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGtgg < 2:3354502/93‑1 (MQ=255)
aaaCAGATCGATATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGtggct > 1:3994728/1‑93 (MQ=255)
gaGATCGATATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGtggctagc < 2:5375304/92‑1 (MQ=255)
cAGATCGATATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGtggctggc < 2:6074660/93‑1 (MQ=255)
cAGATCGATATAGGGCAGAGAAGGCGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGtggcttgc < 2:1790057/93‑1 (MQ=255)
gATCGATATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCtt > 1:693179/1‑93 (MQ=255)
tCGATATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGc > 1:469451/1‑93 (MQ=255)
tCGATATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGc < 1:4654682/93‑1 (MQ=255)
cGATATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCGGCCTCGTGGCTGGCTTGCa < 2:6121024/93‑1 (MQ=255)
atatAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGt > 2:2023823/1‑93 (MQ=255)
atatAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGt < 2:5175235/93‑1 (MQ=255)
tataGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTa < 2:115477/93‑1 (MQ=255)
tataGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTa > 2:1680761/1‑93 (MQ=255)
ataGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAg < 1:1890304/93‑1 (MQ=255)
ataGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAg > 1:2609746/1‑93 (MQ=255)
ataGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAg < 2:158788/93‑1 (MQ=255)
taGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAgc < 1:2946303/93‑1 (MQ=255)
aGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAgcg > 1:2473186/1‑93 (MQ=255)
gggCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAgcgc > 1:6021909/1‑93 (MQ=255)
ggCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGcgcc < 2:4908221/93‑1 (MQ=255)
gCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGcgcca < 1:4165315/93‑1 (MQ=255)
agagAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGcgccatc < 2:1214598/93‑1 (MQ=255)
agagAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGcgccatc < 2:1137535/93‑1 (MQ=255)
agagAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGcgccatc > 1:2693531/1‑93 (MQ=255)
agaAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGcgccctcgc > 2:1849236/1‑93 (MQ=255)
gaAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGcgccatcgcc > 1:3072847/1‑93 (MQ=255)
aGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGcgccatcgccat > 1:5884044/1‑93 (MQ=255)
aGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGcgccatcgccat < 1:2287948/93‑1 (MQ=255)
aGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGcgccatcgccat > 1:6273866/1‑93 (MQ=255)
aGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGcgccatcgccat > 1:762306/1‑93 (MQ=255)
aGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGcgccatcgccat < 2:3255741/93‑1 (MQ=255)
ggggCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCAtt > 1:3218293/1‑93 (MQ=255)
ggCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTc < 1:5767012/93‑1 (MQ=255)
ggCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTc < 2:1422699/93‑1 (MQ=255)
ggCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTc < 1:2905366/93‑1 (MQ=255)
gCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTcc < 1:5559786/93‑1 (MQ=255)
cGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCg > 1:1122197/1‑93 (MQ=255)
cGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCg > 1:2052342/1‑93 (MQ=255)
gATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCgg > 1:4045055/1‑93 (MQ=255)
atatatTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCCGc > 1:3756359/1‑93 (MQ=255)
tatatTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTTGCTTGCAGTAGCGCCATCGCCATTTCCGGCt < 2:1771272/93‑1 (MQ=255)
tatagTTCCACCGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCt < 1:564569/93‑1 (MQ=255)
atatTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTg > 2:307181/1‑93 (MQ=255)
tatTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGc > 1:342185/1‑93 (MQ=255)
tatTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGc < 2:5918212/93‑1 (MQ=255)
tatTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGc < 1:2032886/93‑1 (MQ=255)
atTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCa > 2:5422725/1‑93 (MQ=255)
ccACGTCATATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATaaa < 2:5834752/93‑1 (MQ=255)
ccACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATaaa < 2:4089265/93‑1 (MQ=255)
ccACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATaaa < 2:5270616/93‑1 (MQ=255)
ccACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATaaa < 1:4538233/93‑1 (MQ=255)
ccACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATaaa < 1:100175/93‑1 (MQ=255)
cACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATAAAg < 2:3497419/93‑1 (MQ=255)
cACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATAAAg < 2:4409026/93‑1 (MQ=255)
aCGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCCTAAAgg > 1:5031812/1‑93 (MQ=255)
aCGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATAAAgg > 2:2917176/1‑93 (MQ=255)
aCGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATAAAgg < 2:3800628/93‑1 (MQ=255)
cGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATAAAggg < 2:1026392/93‑1 (MQ=255)
cacaTGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATAAAggggcc > 2:144403/1‑90 (MQ=255)
caTGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTACGGCTGCATAAAGGGCCcac > 2:4805634/1‑93 (MQ=255)
aTGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATAAAGGGCCcacc > 2:5483059/1‑93 (MQ=255)
tGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATAAAGGGCccacca < 1:3838533/93‑1 (MQ=255)
gCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATAAAGGGCCcaccac > 1:750644/1‑93 (MQ=255)
aGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATAAAGGGCCCACCAccc < 2:499345/93‑1 (MQ=255)
gACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATAAAGGGCCCACCACCCg > 1:3528930/1‑93 (MQ=255)
gACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATAAAGGGCCCACCACCCg > 2:2622913/1‑93 (MQ=255)
gACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATAAAGGGCCCACCACCCg > 2:5585118/1‑93 (MQ=255)
cAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATAAAGGGCCCACCACCCGaa > 2:1511866/1‑93 (MQ=255)
aGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATAAAGGGCCCACCACCCGaaa > 1:1278597/1‑93 (MQ=255)
aGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATAAAGGGCCCACCACCCGaaa < 2:5705741/93‑1 (MQ=255)
ggTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATAAAGGGCCCACCACCCGAAAg > 2:4285701/1‑93 (MQ=255)
ggTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATAAAGGGCCCACCACCCGAAAg > 2:4687279/1‑93 (MQ=255)
ggTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATAAAGGGCCCACCACCCGAAAg < 1:1843666/93‑1 (MQ=255)
tttCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATAAAGGGCCCACCACCCGAAAGCg > 1:5900871/1‑93 (MQ=255)
cTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATAAAGGGCCCACCACCCGAAAGCGTTa < 2:2568028/93‑1 (MQ=255)
cTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATAAAGGGCCCACCACCCGAAAGCGTTa > 2:2345440/1‑93 (MQ=255)
tACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATAAAGGGCCCACCACCCGAAAGCGTTaa > 2:4027942/1‑93 (MQ=255)
tACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATAAAGGGCCCACCACCCGAAAGCGTTaa > 2:4442556/1‑93 (MQ=255)
aCCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATAAAGGGCCCACCACCCGAAAGCGTTaaa < 2:2750998/93‑1 (MQ=255)
ccGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATAAAGGGCCCACCACCCGAAAGCGTTAAAc > 1:3234573/1‑93 (MQ=255)
ccGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATAAAGGGCCCACCACCCGAAAGCGTTAAAc < 2:6283697/93‑1 (MQ=255)
cGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATAAAGGGCCCACCACCCGAAAGCGTTAAAcc > 1:5154777/1‑93 (MQ=255)
cGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATAAAGGGCCCACCACCCGAAAGAGTTAAAcc > 2:2159211/1‑93 (MQ=255)
gcagcaTGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATAAAGGGCCCACCACCCGAAAGCGTTAAAccg < 1:3345598/93‑1 (MQ=255)
|
CGTGTTTTAAATCGGCAAGAAACAGATCGATATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGTATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATAAAGGGCTCACCACCCGAAAGCGTTAAACCGC > NC_000913/862182‑862361
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CAACGTGTTTTAAATCGGCAAGAAACAGATCGATATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGTATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATAAAGGGCTCACCACCCGAAAGCGTTAAACCGCCGCC > NC_000913/862179‑862365
|
CAACGTGTTTTAAATCGGCAAGAAACAGATCGATATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGC < SRR4302533.4867827/94‑1 (MQ=60)
AACGTGTTTTAAATCGGCAAGAAACAGATCGATATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCA > SRR4302533.133666/1‑94 (MQ=60)
AACGTGTTTTAAATCGGCAAGAAACAGATCGATATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCA < SRR4302533.5720174/94‑1 (MQ=60)
AACGTGTTTTAAATCGGCAAGAAACAGATCGATATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCA > SRR4302533.1801856/1‑94 (MQ=60)
ACGTGTTTTAAATCGGCAAGAAACAGATCGATATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCAT < SRR4302533.5935707/94‑1 (MQ=60)
CGTGTTTTAAATCGGCAAGAAACAGATCGATATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATG > SRR4302533.2195877/1‑94 (MQ=60)
CGTGTTTTAAATCGGCAAGAAACAGATCGATATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATG > SRR4302533.2167193/1‑94 (MQ=60)
GTGTTTTAAATCGGCAAGAAACAGATCGATATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGA > SRR4302533.2093398/1‑94 (MQ=60)
TGTTTTAAATCGGCAAGAAACAGGTCGATATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAA > SRR4302533.1610680/1‑94 (MQ=60)
TGTTTTAAATCGGCAAGAAACAGATCGATATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAA > SRR4302533.3036534/1‑94 (MQ=60)
TGTTTTAAATCGGCAAGAAACAGATCGATATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAA > SRR4302533.3749458/1‑94 (MQ=60)
GTTTTAAATCGGCAAGAAACAGATCGATATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAAT < SRR4302533.2166273/94‑1 (MQ=60)
TAAATCGGCAAGAAACAGATCGATATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCT < SRR4302533.2054515/94‑1 (MQ=60)
AATCGGCAAGAAACAGATCGATATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGC > SRR4302533.1497546/1‑94 (MQ=60)
TCGGCAAGAAACAGATCGATATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCT > SRR4302533.4493220/1‑94 (MQ=60)
CGGCAAGAAACAGATCGATATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTC < SRR4302533.977689/94‑1 (MQ=60)
GCAAGAAACAGATCGATATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGT > SRR4302533.443546/1‑94 (MQ=60)
CAAGAAACAGATCGATATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTG < SRR4302533.3251328/94‑1 (MQ=60)
CAAGAAACAGATCGATATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTG > SRR4302533.5416063/1‑94 (MQ=60)
CAAGAAACAGATCGATATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTG > SRR4302533.3526488/1‑94 (MQ=60)
AAGAAACAGATCGATATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGG > SRR4302533.4497015/1‑94 (MQ=60)
AAGAAACAGATCGATATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGG > SRR4302533.6134508/1‑94 (MQ=60)
AGAAACAGATCGATATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGC < SRR4302533.1998972/94‑1 (MQ=60)
GAAACAGATCGATATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCT > SRR4302533.4019049/1‑94 (MQ=60)
AAACAGATCGATATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTG < SRR4302533.2032672/94‑1 (MQ=60)
AAACAGATCGATATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTG > SRR4302533.4066993/1‑94 (MQ=60)
ACAGATCGATATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGC > SRR4302533.377443/1‑94 (MQ=60)
CAGATCGATATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCT > SRR4302533.1278743/1‑94 (MQ=60)
AGATCGATATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTT > SRR4302533.697273/1‑94 (MQ=60)
ATCGATATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGGTTGC > SRR4302533.798944/1‑94 (MQ=60)
ATCGATATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGC > SRR4302533.1093605/1‑94 (MQ=60)
ATCGATATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGC > SRR4302533.4507897/1‑94 (MQ=60)
ATCGATATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGC > SRR4302533.472256/1‑94 (MQ=60)
TCGATATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCA < SRR4302533.4682886/94‑1 (MQ=60)
TCGATATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCA < SRR4302533.4086399/94‑1 (MQ=60)
CGATATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAG > SRR4302533.5259665/1‑94 (MQ=60)
CGATATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAG > SRR4302533.3776478/1‑94 (MQ=60)
GATATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGT > SRR4302533.5716260/1‑94 (MQ=60)
TATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAG > SRR4302533.4568242/1‑94 (MQ=60)
TATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAG > SRR4302533.2625767/1‑94 (MQ=60)
ATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTTCAGTAGC > SRR4302533.3441993/1‑94 (MQ=60)
ATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGC < SRR4302533.3657249/94‑1 (MQ=60)
ATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGC > SRR4302533.3876247/1‑94 (MQ=60)
ATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGC < SRR4302533.2957435/94‑1 (MQ=60)
ATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGC < SRR4302533.1901845/94‑1 (MQ=60)
TAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCG < SRR4302533.2964320/94‑1 (MQ=60)
TAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCG > SRR4302533.2488435/1‑94 (MQ=60)
TAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCG > SRR4302533.917998/1‑94 (MQ=60)
TAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCG < SRR4302533.3256263/94‑1 (MQ=60)
AGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGC > SRR4302533.6058405/1‑94 (MQ=60)
GGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCA > SRR4302533.4392553/1‑94 (MQ=60)
GCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCAT < SRR4302533.4190553/94‑1 (MQ=60)
CAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATC > SRR4302533.2710033/1‑94 (MQ=60)
AGAGAAGGGGGGATATACTTCCACGGCACATGGAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCG < SRR4302533.2414014/94‑1 (MQ=60)
GAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGC > SRR4302533.1935559/1‑94 (MQ=60)
AGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCC > SRR4302533.3091710/1‑94 (MQ=60)
AGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCC < SRR4302533.1003181/94‑1 (MQ=60)
AGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCC > SRR4302533.2365623/1‑94 (MQ=60)
GAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCA > SRR4302533.188504/1‑94 (MQ=60)
AAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCAT > SRR4302533.5919603/1‑94 (MQ=60)
AAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCAT > SRR4302533.6311338/1‑94 (MQ=60)
AAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCAT > SRR4302533.766793/1‑94 (MQ=60)
AGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATT < SRR4302533.2723385/94‑1 (MQ=60)
AGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATT < SRR4302533.2302112/94‑1 (MQ=60)
AGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATT > SRR4302533.3238138/1‑94 (MQ=60)
GGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTT < SRR4302533.5016601/94‑1 (MQ=60)
GGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCC < SRR4302533.2923209/94‑1 (MQ=60)
GGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCC < SRR4302533.5801827/94‑1 (MQ=60)
GCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCG < SRR4302533.5593388/94‑1 (MQ=60)
GCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCG > SRR4302533.2065006/1‑94 (MQ=60)
GCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCG > SRR4302533.1128858/1‑94 (MQ=60)
CGATATATTTNCACGGCACATGCAGACAGGTTTCTACCGCAGCANGNATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGG > SRR4302533.5800257/1‑94 (MQ=60)
CGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGG > SRR4302533.4069674/1‑94 (MQ=60)
CGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGG < SRR4302533.1392445/94‑1 (MQ=60)
GATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGC > SRR4302533.6153793/1‑94 (MQ=60)
GATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCCGC > SRR4302533.3779384/1‑94 (MQ=60)
GATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCCTGCAGTAGCGCCATCGCCATTTCCGGC > SRR4302533.2611/1‑94 (MQ=60)
ATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCT > SRR4302533.3150046/1‑94 (MQ=60)
ATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCT < SRR4302533.652422/94‑1 (MQ=60)
TATAGTTCCACCGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTG < SRR4302533.567914/94‑1 (MQ=60)
ATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGC > SRR4302533.344273/1‑94 (MQ=60)
ATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGC < SRR4302533.6125818/94‑1 (MQ=60)
TATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCA < SRR4302533.2045430/94‑1 (MQ=60)
TATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCA > SRR4302533.4983197/1‑94 (MQ=60)
ATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCAT < SRR4302533.2833690/94‑1 (MQ=60)
ATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGACATTTCCGGCTGCAT > SRR4302533.5599681/1‑94 (MQ=60)
TTTCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATA > SRR4302533.4685535/1‑94 (MQ=60)
TCCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATAAA < SRR4302533.764288/94‑1 (MQ=60)
CCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATAAAG < SRR4302533.100798/94‑1 (MQ=60)
CCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATAAAG < SRR4302533.3823985/94‑1 (MQ=60)
CCACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATAAAG < SRR4302533.4565710/94‑1 (MQ=60)
CACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCCTAAAGG > SRR4302533.5062277/1‑94 (MQ=60)
CCGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATAAAGGG < SRR4302533.1561870/94‑1 (MQ=60)
ACGGCACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATAAAGGG < SRR4302533.71849/94‑1 (MQ=60)
CACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATAAAGGGCccc > SRR4302533.586140/1‑91 (MQ=60)
CACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATAAAGGGCCCA < SRR4302533.2674812/94‑1 (MQ=60)
ACATGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATAAAGGGCCCAC > SRR4302533.5173365/1‑94 (MQ=60)
TGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATAAAGGGCCCACCAC > SRR4302533.755065/1‑94 (MQ=60)
TGCAGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATAAAGGGCCCACCAC < SRR4302533.3861984/94‑1 (MQ=60)
AGACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATAAAGGGCCCACCACCCG > SRR4302533.3550678/1‑94 (MQ=60)
ACAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATAAAGGGCCCACCACCCGAA > SRR4302533.1663120/1‑94 (MQ=60)
CAGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATAAAGGGCCCACCACCCGAAA > SRR4302533.1286282/1‑94 (MQ=60)
AGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATAAAGGGCCCACCACCCGAAAG < SRR4302533.6057932/94‑1 (MQ=60)
AGGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATAAAGGGCCCACCACCCGAAAG > SRR4302533.3267567/1‑94 (MQ=60)
GGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATAAAGGGCCCACCACCCGAAAGC > SRR4302533.1767757/1‑94 (MQ=60)
GGTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATAAAGGGCCCACCACCCGAAAGC < SRR4302533.1854914/94‑1 (MQ=60)
GTTTCTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATAAAGGGCCCACCACCCGAAAGCG > SRR4302533.5936506/1‑94 (MQ=60)
CTACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATAAAGGGCCCACCACCCGAAAGCGTTAA < SRR4302533.430124/94‑1 (MQ=60)
ACCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATAAAGGGCCCACCACCCGAAAGCGTTAAAC > SRR4302533.3254504/1‑94 (MQ=60)
CCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATAAAGGGCCCACCACCCGAAAGCGTTAAACC > SRR4302533.5185906/1‑94 (MQ=60)
CCGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATAAAGGGCCCACCACCCGAAAGCGTTAAACC < SRR4302533.607866/94‑1 (MQ=60)
CGCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATAAAGGGCCCACCACCCGAAAGCGTTAAACCG > SRR4302533.5927820/1‑94 (MQ=60)
GCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATAAAGGGCCCACCACCCGAAAGCGTTAAACCGC > SRR4302533.5478999/1‑94 (MQ=60)
GCAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATAAAGGGCCCACCACCCGAAAGCGTTAAACCGC < SRR4302533.3366268/94‑1 (MQ=60)
CAGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATAAAGGGCCCACCACCCGAAAGCGTTAAACCGCC > SRR4302533.6098297/1‑94 (MQ=60)
AGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATAAAGGGCCCACCACCCGAAAGCGTTAAACCGCCG > SRR4302533.1890947/1‑94 (MQ=60)
AGCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATAAAGGGCCCACCACCCGAAAGCGTTAAACCGCCG > SRR4302533.4201963/1‑94 (MQ=60)
GCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATAAAGGGCCCACCACCCGAAAGCGTTAAACCGCCGC > SRR4302533.4014796/1‑94 (MQ=60)
GCATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATAAAGGGCCCACCACCCGAAAGCGTTAAACCGCCGC < SRR4302533.2330665/94‑1 (MQ=60)
CATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATAAAGGGCCCACCACCCGAAAGCGTTAAACCGCCGCC < SRR4302533.3745616/94‑1 (MQ=60)
CATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATAAAGGGCCCACCACCCGAAAGCGTTAAACCGCCGCC < SRR4302533.1182210/94‑1 (MQ=60)
CATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATAAAGGGCCCACCACCCGAAAGCGTTAAACCGCCGCC > SRR4302533.1655710/1‑94 (MQ=60)
|
CAACGTGTTTTAAATCGGCAAGAAACAGATCGATATAGGGCAGAGAAGGGGCGATATATTTCCACGGCACATGCAGACAGGTTTCTACCGCAGTATGAATGCCTGCCTCGTGGCTGGCTTGCAGTAGCGCCATCGCCATTTCCGGCTGCATAAAGGGCTCACCACCCGAAAGCGTTAAACCGCCGCC > NC_000913/862179‑862365
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
