Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
987,323 |
C→T |
A296T (GCC→ACC) |
asnS ← |
asparagine tRNA synthetase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 987,323 | 0 | C | T | 99.1%
| 772.8
/ NA
| 223 | A296T (GCC→ACC) | asnS | asparagine tRNA synthetase |
| Reads supporting (aligned to +/- strand): ref base C (2/0); new base T (105/116); total (107/116) |
| Fisher's exact test for biased strand distribution p-value = 2.29e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 226 total aligned reads displayed.
TCCTGCCGCAGTTTTCGAGAATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGCATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCAGCATGGCTTCAG > NC_000913/987233‑987412
|
ccGCAGTTTTCGAGAATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTa < 2:4696873/93‑1 (MQ=255)
cGCAGTTTTCGAGAATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTAt > 2:5514793/1‑93 (MQ=255)
cGCAGTTTTCGAGAATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTAt < 1:1880595/93‑1 (MQ=255)
gCAGTTTTCGAGAATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATc > 1:5979489/1‑93 (MQ=255)
gCAGTTTTCGAGAATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATc > 2:2291846/1‑93 (MQ=255)
cAGTTTTCGAGAATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTTAATGAAGCGTTCCAGACGTGAAACGCTATCTTTATCt < 1:1399963/93‑1 (MQ=255)
aGTTTTCGAGAATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTa > 2:82962/1‑93 (MQ=255)
aGTTTTCGAGAATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTa < 1:488843/93‑1 (MQ=255)
gTTTTCGAGAATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTAc < 1:106296/93‑1 (MQ=255)
gTTTTCGAGAATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTAc > 1:794855/1‑93 (MQ=255)
ttttCGAGAATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTAcg > 2:3169164/1‑93 (MQ=255)
ttttCGAGAATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTAcg > 2:3551033/1‑93 (MQ=255)
ttttCGAGAATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTAcg > 1:4895111/1‑93 (MQ=255)
tttCGAGAATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTAcgc < 1:1973363/93‑1 (MQ=255)
cGAGAATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGtt < 2:4163292/93‑1 (MQ=255)
gagaATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTc > 1:6255022/1‑93 (MQ=255)
gagaATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTc < 2:3486273/93‑1 (MQ=255)
agaATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCa > 2:2127769/1‑93 (MQ=255)
aaTGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGc < 2:2468084/93‑1 (MQ=255)
tGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCga > 1:3934161/1‑93 (MQ=255)
ggTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCgaa < 1:2242591/93‑1 (MQ=255)
ggTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCgaa > 1:277539/1‑93 (MQ=255)
tCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCgaaga < 1:4789013/93‑1 (MQ=255)
tCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCgaaga > 2:1351658/1‑93 (MQ=255)
tCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCgaaga < 2:4745170/93‑1 (MQ=255)
cACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGCATCTTTATCTACGCGTTCAGCgaagaa > 1:234266/1‑93 (MQ=255)
aCTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAAt < 1:4569364/93‑1 (MQ=255)
aCTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAAt > 1:4145135/1‑93 (MQ=255)
tGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGCATCTTTATCTACGCGTTCAGCGAAGAAttt > 1:3884241/1‑93 (MQ=255)
gCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTc > 2:3028856/1‑93 (MQ=255)
gCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTc < 2:572828/93‑1 (MQ=255)
cGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCa < 1:1547998/93‑1 (MQ=255)
cGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCa > 1:5331520/1‑93 (MQ=255)
gTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCAt < 2:3962772/93‑1 (MQ=255)
tCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATg > 1:2537733/1‑93 (MQ=255)
cGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATgt < 1:6043091/93‑1 (MQ=255)
ggTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATgtc < 2:1523960/93‑1 (MQ=255)
ataATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATgtcgtc < 1:5163657/93‑1 (MQ=255)
taATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCa > 2:1602843/1‑93 (MQ=255)
aTCCACCTGCGCAAAAGCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAgc < 1:3473531/93‑1 (MQ=255)
tCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAgcg > 1:1937000/1‑93 (MQ=255)
ccACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAgcgc < 2:3105629/93‑1 (MQ=255)
cACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGcgcg < 2:6274347/93‑1 (MQ=255)
cACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGcgcg < 1:1113164/93‑1 (MQ=255)
cACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGcgcg > 1:1745820/1‑93 (MQ=255)
aCCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGt > 1:1289472/1‑93 (MQ=255)
aCCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGt < 1:3147202/93‑1 (MQ=255)
aCCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGt < 2:424449/93‑1 (MQ=255)
aCCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGATATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGt > 1:960675/1‑93 (MQ=255)
ccTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGtt > 2:671071/1‑93 (MQ=255)
cTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGttc > 1:2950427/1‑93 (MQ=255)
tGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGttct > 2:4285937/1‑93 (MQ=255)
tGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGttct > 2:5544979/1‑93 (MQ=255)
tGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGttct < 2:1774187/93‑1 (MQ=255)
gcgcAAAATCGGCTTCAATGAAGCGTGCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGttctt < 1:4416668/93‑1 (MQ=255)
cgcAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGttcttc < 1:6285246/93‑1 (MQ=255)
gcAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCg > 2:3286066/1‑93 (MQ=255)
aaaaTCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCgag > 2:4412003/1‑93 (MQ=255)
aaaTCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCgaga > 1:5530235/1‑93 (MQ=255)
aaaTCGGCTTCAATGAAGCGTTCCAGACCTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCgaga < 2:1442933/93‑1 (MQ=255)
aaNCGGNTTCAATGAAGCGTTCNAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGaa < 1:4290843/93‑1 (MQ=255)
tCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAAcc < 1:3078009/93‑1 (MQ=255)
ggCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGc < 1:2743773/93‑1 (MQ=255)
ggCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGc < 2:4475665/93‑1 (MQ=255)
gCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCt < 2:1924229/93‑1 (MQ=255)
tCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTg > 1:3643243/1‑93 (MQ=255)
cAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGa > 2:436010/1‑93 (MQ=255)
aaTGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGaa < 2:5440982/93‑1 (MQ=255)
aaTGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGaa < 1:5082779/93‑1 (MQ=255)
aaTGAAACGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCAAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGaa < 1:1556473/93‑1 (MQ=255)
tGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGa < 1:3205205/93‑1 (MQ=255)
aaGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGCTCTTCGAGAACCGCTTTGAAGACa < 2:6072823/93‑1 (MQ=255)
aGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACat < 2:6116718/93‑1 (MQ=255)
cGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACatat < 1:1123740/93‑1 (MQ=255)
gTTACAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATAtt < 1:1810974/93‑1 (MQ=255)
tCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTc < 2:3751689/93‑1 (MQ=255)
tCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTc < 1:3419133/93‑1 (MQ=255)
ccAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCa < 1:1519780/93‑1 (MQ=255)
ccAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCa < 1:4062159/93‑1 (MQ=255)
cAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCAg > 1:5665187/1‑93 (MQ=255)
cAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCAg < 2:1649953/93‑1 (MQ=255)
aGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCAGc > 2:5327251/1‑93 (MQ=255)
gACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCAGCa > 2:3135377/1‑93 (MQ=255)
gACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCAGCa < 2:2006385/93‑1 (MQ=255)
gACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCAGCa > 2:4929083/1‑93 (MQ=255)
aCGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCAGCAt > 1:2858622/1‑93 (MQ=255)
cGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCAGCATg < 1:5801278/93‑1 (MQ=255)
cGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCAGCATg > 2:654675/1‑93 (MQ=255)
cGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCAGCATg < 2:224861/93‑1 (MQ=255)
cGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCAGCATg < 2:2661188/93‑1 (MQ=255)
cGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCAGCATg > 2:4014239/1‑93 (MQ=255)
cGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCAGCATg < 2:3793075/93‑1 (MQ=255)
tGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCAGCATGGc > 2:2071164/1‑93 (MQ=255)
gAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCAGCATGGCt < 2:5252134/93‑1 (MQ=255)
aaaCGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCAGCATGGCtt < 1:4466332/93‑1 (MQ=255)
aaCGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCAGCATGGCTTc < 2:2443153/93‑1 (MQ=255)
aaCGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCAGCATGGCTTc > 1:1901922/1‑93 (MQ=255)
aaCGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCAGCATGGCTTc < 2:1183881/93‑1 (MQ=255)
aCGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCAGCATGGCTTCa > 2:3927021/1‑93 (MQ=255)
cGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCAGCATGGCTTCAg > 1:4834312/1‑93 (MQ=255)
|
TCCTGCCGCAGTTTTCGAGAATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGCATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCAGCATGGCTTCAG > NC_000913/987233‑987412
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ACTTCCTGCCGCAGTTTTCGAGAATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGCATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCAGCATGGCTTCAGCCAG > NC_000913/987230‑987416
|
ACTTCCTGCCGCAGTTTTCGAGAATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGT > SRR4302533.5637613/1‑94 (MQ=60)
CTTCCTGCCGCAGTTTTCGAGAATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTA > SRR4302533.3857835/1‑94 (MQ=60)
CTTCCTGCCGCAGTTTTCGAGAATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTA > SRR4302533.779438/1‑94 (MQ=60)
CTTCCTGCCGCAGTTTTCGAGAATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTA > SRR4302533.2020649/1‑94 (MQ=60)
TTCCTGCCGCAGTTTTCGAGAATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTAT > SRR4302533.1844549/1‑94 (MQ=60)
CCTGCCGCAGTTTTCGAGAATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCT < SRR4302533.1893466/94‑1 (MQ=60)
TGCCGCAGTTTTCGAGAATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTT > SRR4302533.1768846/1‑94 (MQ=60)
GCCGCAGTTTTCGAGAATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTA < SRR4302533.1631506/94‑1 (MQ=60)
CCGCAGTTTTCGAGAATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTAT > SRR4302533.5176464/1‑94 (MQ=60)
CGCAGTTTTCGAGAATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATC < SRR4302533.1892049/94‑1 (MQ=60)
CGCAGTTTTCGAGAATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATC > SRR4302533.6015705/1‑94 (MQ=60)
CGCAGTTTTCGAGAATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATC < SRR4302533.1418175/94‑1 (MQ=60)
GCAGTTTTCGAGAATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCT > SRR4302533.1383779/1‑94 (MQ=60)
GCAGTTTTCGAGAATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCT > SRR4302533.2893837/1‑94 (MQ=60)
CAGTTTTCGAGAATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTTAATGAAGCGTTCCAGACGTGAAACGCTATCTTTATCTA < SRR4302533.1408401/94‑1 (MQ=60)
AGTTTTCGAGAATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTAC > SRR4302533.799531/1‑94 (MQ=60)
AGTTTTCGAGAATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTAC < SRR4302533.491767/94‑1 (MQ=60)
AGTTTTCGAGAATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTAC > SRR4302533.1721076/1‑94 (MQ=60)
AGTTTTCGAGAATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTAC < SRR4302533.4207022/94‑1 (MQ=60)
GTTTTCGAGAATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACG > SRR4302533.4924777/1‑94 (MQ=60)
GTTTTCGAGAATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACG < SRR4302533.106960/94‑1 (MQ=60)
TTTTCGAGAATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGC < SRR4302533.88629/94‑1 (MQ=60)
TTTCGAGAATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCG < SRR4302533.1985444/94‑1 (MQ=60)
TTTCGAGAATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCG < SRR4302533.1096096/94‑1 (MQ=60)
CGAGAATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTC > SRR4302533.6292430/1‑94 (MQ=60)
AATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCG < SRR4302533.5041640/94‑1 (MQ=60)
ATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGA > SRR4302533.3456923/1‑94 (MQ=60)
ATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGA > SRR4302533.3958174/1‑94 (MQ=60)
TGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAA > SRR4302533.279233/1‑94 (MQ=60)
TGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAA > SRR4302533.4859038/1‑94 (MQ=60)
TGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATATTTATCTACGCGTTCAGCGAA > SRR4302533.1267864/1‑94 (MQ=60)
GGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAG > SRR4302533.490926/1‑94 (MQ=60)
GGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAG < SRR4302533.2256453/94‑1 (MQ=60)
TCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAA > SRR4302533.1561173/1‑94 (MQ=60)
TCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAA < SRR4302533.4818019/94‑1 (MQ=60)
TCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGCATCTTTATCTACGCGTTCAGCGAAGAA > SRR4302533.235713/1‑94 (MQ=60)
CACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAAT > SRR4302533.4170257/1‑94 (MQ=60)
CACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAAT < SRR4302533.3425171/94‑1 (MQ=60)
ACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATT < SRR4302533.4597055/94‑1 (MQ=60)
CTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGCATCTTTATCTACGCGTTCAGCGAAGAATTT > SRR4302533.3907941/1‑94 (MQ=60)
GCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCA > SRR4302533.5363476/1‑94 (MQ=60)
GCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCA > SRR4302533.3721923/1‑94 (MQ=60)
CGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCAT > SRR4302533.3424661/1‑94 (MQ=60)
CGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCAT < SRR4302533.1541467/94‑1 (MQ=60)
CGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCAT < SRR4302533.1557325/94‑1 (MQ=60)
GTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATG > SRR4302533.4919548/1‑94 (MQ=60)
GTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATG > SRR4302533.2553357/1‑94 (MQ=60)
TCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGT < SRR4302533.824056/94‑1 (MQ=60)
CGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTC < SRR4302533.6079703/94‑1 (MQ=60)
GGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCG < SRR4302533.2960039/94‑1 (MQ=60)
ATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCA < SRR4302533.5194836/94‑1 (MQ=60)
TAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAG > SRR4302533.1302739/1‑94 (MQ=60)
TAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAG < SRR4302533.5890946/94‑1 (MQ=60)
ATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCG > SRR4302533.1948812/1‑94 (MQ=60)
ATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCG < SRR4302533.2433885/94‑1 (MQ=60)
ATCCACCTGCGCAAAAGCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCG < SRR4302533.3494965/94‑1 (MQ=60)
CCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTgttgttgtcatcgcg > SRR4302533.6230635/1‑79 (MQ=60)
CCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCG > SRR4302533.4062017/1‑94 (MQ=60)
CCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCG > SRR4302533.1756439/1‑94 (MQ=60)
CCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCG < SRR4302533.3205366/94‑1 (MQ=60)
CACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGT < SRR4302533.1119766/94‑1 (MQ=60)
CACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGT > SRR4302533.1297234/1‑94 (MQ=60)
CACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGATATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGT > SRR4302533.966321/1‑94 (MQ=60)
CCCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTT < SRR4302533.360461/94‑1 (MQ=60)
ACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTT < SRR4302533.3166554/94‑1 (MQ=60)
CCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTC > SRR4302533.217662/1‑94 (MQ=60)
CCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTC > SRR4302533.2968468/1‑94 (MQ=60)
TGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTT < SRR4302533.4225656/94‑1 (MQ=60)
GCGCAAAATCGGCTTCAATGAAGCGTGCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTC < SRR4302533.4443372/94‑1 (MQ=60)
CGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCG < SRR4302533.6322749/94‑1 (MQ=60)
GCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGA > SRR4302533.415771/1‑94 (MQ=60)
CAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAG > SRR4302533.1925670/1‑94 (MQ=60)
CAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAG > SRR4302533.665775/1‑94 (MQ=60)
AAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGA > SRR4302533.5563619/1‑94 (MQ=60)
AATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAAC > SRR4302533.1926089/1‑94 (MQ=60)
AANCGGNTTCAATGAAGCGTTCNAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAAC < SRR4302533.4316648/94‑1 (MQ=60)
ATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACC > SRR4302533.1126103/1‑94 (MQ=60)
ATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACC < SRR4302533.2323244/94‑1 (MQ=60)
ATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACC < SRR4302533.4358097/94‑1 (MQ=60)
TCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCG < SRR4302533.3096897/94‑1 (MQ=60)
GGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCT > SRR4302533.2446527/1‑94 (MQ=60)
GGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCT < SRR4302533.2760596/94‑1 (MQ=60)
GCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTT < SRR4302533.5437782/94‑1 (MQ=60)
CTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTT > SRR4302533.6311260/1‑94 (MQ=60)
TTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTG > SRR4302533.3665644/1‑94 (MQ=60)
TCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGA < SRR4302533.4449932/94‑1 (MQ=60)
AATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAG < SRR4302533.5113500/94‑1 (MQ=60)
AATGAAACGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCAAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAG < SRR4302533.1565842/94‑1 (MQ=60)
TGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGAC < SRR4302533.3224938/94‑1 (MQ=60)
AAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACAT < SRR4302533.4650094/94‑1 (MQ=60)
AAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACAT < SRR4302533.5666800/94‑1 (MQ=60)
CGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATT < SRR4302533.5609395/94‑1 (MQ=60)
CGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATT < SRR4302533.1130408/94‑1 (MQ=60)
GTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTT < SRR4302533.2771678/94‑1 (MQ=60)
GTTACAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTT < SRR4302533.1822038/94‑1 (MQ=60)
TTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTC < SRR4302533.3152808/94‑1 (MQ=60)
TCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCA < SRR4302533.3440260/94‑1 (MQ=60)
CCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCAG > SRR4302533.5699415/1‑94 (MQ=60)
CCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCAG > SRR4302533.6035650/1‑94 (MQ=60)
CCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCAG < SRR4302533.1528930/94‑1 (MQ=60)
CCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCAG < SRR4302533.5096896/94‑1 (MQ=60)
CCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCAG < SRR4302533.4086888/94‑1 (MQ=60)
AGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCAGCA > SRR4302533.1965552/1‑94 (MQ=60)
AGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCAGCA < SRR4302533.287039/94‑1 (MQ=60)
GACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCAGCAT > SRR4302533.2876209/1‑94 (MQ=60)
GACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCAGCAT < SRR4302533.461662/94‑1 (MQ=60)
CGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCAGCATGG < SRR4302533.5836322/94‑1 (MQ=60)
GTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCAGCATGGC > SRR4302533.6134850/1‑94 (MQ=60)
TGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCAGCATGGCT > SRR4302533.3000491/1‑94 (MQ=60)
TGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCAGCATGGCT < SRR4302533.4513204/94‑1 (MQ=60)
GAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCAGCATGGCTT > SRR4302533.3738753/1‑94 (MQ=60)
GAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCAGCATGGCTT < SRR4302533.5766507/94‑1 (MQ=60)
AAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCAGCATGGCTTC < SRR4302533.3914800/94‑1 (MQ=60)
AAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCAGCATGGCTTC < SRR4302533.4493344/94‑1 (MQ=60)
AAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCAGCATGGCTTC > SRR4302533.1913531/1‑94 (MQ=60)
AACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCAGCATGGCTTCA < SRR4302533.2649690/94‑1 (MQ=60)
ACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCAGCATGGCTTCAG > SRR4302533.4863613/1‑94 (MQ=60)
ACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCAGCATGGCTTCAG > SRR4302533.5262863/1‑94 (MQ=60)
GGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCAGCATGGCTTCAGCC > SRR4302533.3069531/1‑94 (MQ=60)
GGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCAGCATGGCTTCAGCC > SRR4302533.3770516/1‑94 (MQ=60)
GTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCAGCATGGCTTCAGCCA > SRR4302533.6048018/1‑94 (MQ=60)
TATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCAGCATGGCTTCAGCCAG > SRR4302533.1224024/1‑94 (MQ=60)
|
ACTTCCTGCCGCAGTTTTCGAGAATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGCATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCAGCATGGCTTCAGCCAG > NC_000913/987230‑987416
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
