Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,030,592	G→A	T17I (ACC→ATC)	yccA ←	putative carrier/transport protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,030,592	0	G	A	99.6%	828.0 / ‑5.5	224	T17I (ACC→ATC)	yccA	putative carrier/transport protein
Reads supporting (aligned to +/- strand): ref base G (1/0); new base A (124/99); total (125/99)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.93e-01

Only 100 of 232 total aligned reads displayed.

AGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGGTGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGACAGATGTAATTAATTAAGCAGCA  >  NC_000913/1030502‑1030681

agcaTCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATg                                                                                         >  1:5808620/1‑93 (MQ=255)

agcaTCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATg                                                                                         <  1:2016379/93‑1 (MQ=255)

 gcaTCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGc                                                                                        >  2:641498/1‑93 (MQ=255)

 gcaTCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGc                                                                                        <  2:3836780/93‑1 (MQ=255)

 gcaTCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGc                                                                                        >  2:1867937/1‑93 (MQ=255)

 gcaTCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGc                                                                                        >  1:2121843/1‑93 (MQ=255)

   aTCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTa                                                                                      >  1:1030262/1‑93 (MQ=255)

   aTCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTa                                                                                      >  2:4086123/1‑93 (MQ=255)

   aTCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTa                                                                                      >  1:652709/1‑93 (MQ=255)

    tCAGCANCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGNCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTaa                                                                                     >  1:1273842/1‑93 (MQ=255)

    tCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTaa                                                                                     >  2:5468788/1‑93 (MQ=255)

    tCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTaa                                                                                     >  1:2401304/1‑93 (MQ=255)

    tCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTaa                                                                                     >  2:2836725/1‑93 (MQ=255)

       gCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCa                                                                                  <  1:2360061/93‑1 (MQ=255)

        cACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAg                                                                                 >  2:3772629/1‑93 (MQ=255)

        cACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAg                                                                                 <  1:5795450/93‑1 (MQ=255)

         aCCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGt                                                                                >  1:4128862/1‑93 (MQ=255)

          ccGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTg                                                                               >  2:761339/1‑93 (MQ=255)

          ccGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTg                                                                               >  1:1989160/1‑93 (MQ=255)

           cGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGa                                                                              <  1:5271009/93‑1 (MQ=255)

           cGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGa                                                                              >  2:3866195/1‑93 (MQ=255)

            gTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGAt                                                                             >  2:1107252/1‑93 (MQ=255)

             tACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATg                                                                            >  1:2261795/1‑93 (MQ=255)

             tACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATg                                                                            >  1:4223262/1‑93 (MQ=255)

               cTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTa                                                                          >  1:1247125/1‑93 (MQ=255)

               cTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTa                                                                          >  2:5803588/1‑93 (MQ=255)

               cTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTa                                                                          <  1:5587071/93‑1 (MQ=255)

                tGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTAc                                                                         <  1:1459706/93‑1 (MQ=255)

                 ggCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACg                                                                        <  1:5475742/93‑1 (MQ=255)

                 ggCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACg                                                                        >  1:4714306/1‑93 (MQ=255)

                 ggCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACg                                                                        <  1:1378442/93‑1 (MQ=255)

                 ggCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACg                                                                        <  1:5631017/93‑1 (MQ=255)

                 ggCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACg                                                                        >  2:2032049/1‑93 (MQ=255)

                     gTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCa                                                                    >  1:3417441/1‑93 (MQ=255)

                     gTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCa                                                                    >  1:4396156/1‑93 (MQ=255)

                     gTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGCATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGCCa                                                                    >  1:3770857/1‑93 (MQ=255)

                      ttGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCAt                                                                   <  1:1825116/93‑1 (MQ=255)

                          ggTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTga                                                               >  1:2284665/1‑93 (MQ=255)

                          ggTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTga                                                               <  2:1010456/93‑1 (MQ=255)

                          ggTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTga                                                               >  1:1014556/1‑93 (MQ=255)

                           gTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTgaa                                                              >  2:2623079/1‑93 (MQ=255)

                           gTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTgaa                                                              >  1:2500190/1‑93 (MQ=255)

                           gTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTgaa                                                              >  2:3469792/1‑93 (MQ=255)

                              aTCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTgaagaa                                                           >  1:3002303/1‑93 (MQ=255)

                               tCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAAc                                                          <  1:5923134/93‑1 (MQ=255)

                               tCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAAc                                                          >  1:3567375/1‑93 (MQ=255)

                                 gCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTa                                                        >  2:6220800/1‑93 (MQ=255)

                                  ccGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTaa                                                       >  1:2666226/1‑93 (MQ=255)

                                    gAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACa                                                     <  2:1988077/93‑1 (MQ=255)

                                    gAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACa                                                     >  2:3611029/1‑93 (MQ=255)

                                    gAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACa                                                     >  1:768346/1‑93 (MQ=255)

                                       aaGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATa                                                  >  2:5307491/1‑93 (MQ=255)

                                         ggCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACg                                                <  1:4048642/93‑1 (MQ=255)

                                          gCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGa                                               <  2:2877283/93‑1 (MQ=255)

                                            cAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATc                                             >  1:4751547/1‑93 (MQ=255)

                                             aGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATcc                                            >  2:5909643/1‑93 (MQ=255)

                                              gCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCa                                           >  1:5946762/1‑93 (MQ=255)

                                              gCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCa                                           <  1:4582944/93‑1 (MQ=255)

                                              gCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCa                                           >  2:1658104/1‑93 (MQ=255)

                                              gCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCa                                           >  1:5196412/1‑93 (MQ=255)

                                                gTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCAtt                                         >  2:173818/1‑93 (MQ=255)

                                                 tCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTg                                        <  2:5025358/93‑1 (MQ=255)

                                                 tCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTg                                        >  1:2296025/1‑93 (MQ=255)

                                                 tCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTg                                        >  1:2173705/1‑93 (MQ=255)

                                                  cAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGa                                       >  1:5365713/1‑93 (MQ=255)

                                                  cAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGa                                       >  2:4958314/1‑93 (MQ=255)

                                                     gCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTc                                    <  2:319227/93‑1 (MQ=255)

                                                       tCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCAc                                  <  1:4504339/93‑1 (MQ=255)

                                                       tCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCAc                                  >  2:3305413/1‑93 (MQ=255)

                                                          gcagAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCActct                               >  2:2486655/1‑93 (MQ=255)

                                                            agAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCActctct                             >  2:1559809/1‑93 (MQ=255)

                                                             gAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTa                            <  2:1241564/93‑1 (MQ=255)

                                                             gAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTa                            <  2:5510294/93‑1 (MQ=255)

                                                              aaaaTAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTAt                           <  2:4220741/93‑1 (MQ=255)

                                                              aaaaTAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTAt                           <  2:4818595/93‑1 (MQ=255)

                                                                aaTAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGa                         >  2:2275691/1‑93 (MQ=255)

                                                                  tAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGACa                       <  2:2934840/93‑1 (MQ=255)

                                                                  tAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGACa                       <  1:1418077/93‑1 (MQ=255)

                                                                   aGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGACAg                      >  2:3020637/1‑93 (MQ=255)

                                                                   aGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGACAg                      <  2:5128977/93‑1 (MQ=255)

                                                                      tATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGACAGATg                   <  2:847380/93‑1 (MQ=255)

                                                                       aTTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGACAGATGt                  >  1:3146190/1‑93 (MQ=255)

                                                                        ttACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGACAGATGta                 >  1:6139257/1‑93 (MQ=255)

                                                                         tACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGACAGATGtaa                <  2:4516565/93‑1 (MQ=255)

                                                                           cGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGACAGATGtaatt              >  1:215040/1‑93 (MQ=255)

                                                                             cagcaCCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGACAGATGtaattaa            <  1:373386/93‑1 (MQ=255)

                                                                              agcaCCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGACAGATGtaattaat           >  1:5084820/1‑93 (MQ=255)

                                                                                caCCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGACAGATGTAattaatta         <  2:1286562/93‑1 (MQ=255)

                                                                                 aCCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGACAGATGTAAttaattaa        >  1:4674092/1‑93 (MQ=255)

                                                                                 aCCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGACAGATGTAAttaattaa        >  2:553122/1‑93 (MQ=255)

                                                                                   cTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGACAGATGTAATTAATTAagc      <  2:1363958/93‑1 (MQ=255)

                                                                                    ttATGGGTGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCGCTCTCTATGACAGATGTAATTAATTAagca     <  2:4335117/93‑1 (MQ=255)

                                                                                    ttATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGACAGATGTAATTAATTAagca     <  2:5488188/93‑1 (MQ=255)

                                                                                    ttATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGACAGATGTAATTAATTAagca     <  2:5612850/93‑1 (MQ=255)

                                                                                     tATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGACAGATGTAATTAATTAagcag    >  1:2850501/1‑93 (MQ=255)

                                                                                     tATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGACAGATGTAATTAATTAagcag    >  2:3121804/1‑93 (MQ=255)

                                                                                      aTGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGACAGATGTAATTAATTAagcagc   >  1:3936186/1‑93 (MQ=255)

                                                                                      aTGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGACAGATGTAATTAATTAagcagc   <  2:5233108/93‑1 (MQ=255)

                                                                                       tGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGACAGATGTAATTAATTAAgcagca  <  1:3463397/93‑1 (MQ=255)

                                                                                       tGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCAATTGAGTCACTCTCTATGACAGATGTAATTAATTAAgcagca  <  2:5161832/93‑1 (MQ=255)

AGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGGTGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGACAGATGTAATTAATTAAGCAGCA  >  NC_000913/1030502‑1030681

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGGTGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGACAGATGTAATTAATTAAGCAGCATAAT  >  NC_000913/1030499‑1030685

GGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGA                                                                                               <  SRR4302533.3693507/94‑1 (MQ=60)

  GAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATG                                                                                             <  SRR4302533.2470741/94‑1 (MQ=60)

  CAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATG                                                                                             >  SRR4302533.5843696/1‑94 (MQ=60)

  CAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATG                                                                                             >  SRR4302533.4881442/1‑94 (MQ=60)

   AGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGC                                                                                            >  SRR4302533.2134924/1‑94 (MQ=60)

   AGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGC                                                                                            <  SRR4302533.2028801/94‑1 (MQ=60)

     CATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTA                                                                                          >  SRR4302533.656562/1‑94 (MQ=60)

     CATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTA                                                                                          >  SRR4302533.3981641/1‑94 (MQ=60)

     CATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTA                                                                                          >  SRR4302533.1036319/1‑94 (MQ=60)

      ATCAGCANCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGNCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAA                                                                                         >  SRR4302533.1281468/1‑94 (MQ=60)

      ATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAA                                                                                         >  SRR4302533.2416134/1‑94 (MQ=60)

       TCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAG                                                                                        <  SRR4302533.467068/94‑1 (MQ=60)

          GCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAG                                                                                     <  SRR4302533.2374645/94‑1 (MQ=60)

           CACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGT                                                                                    <  SRR4302533.5830464/94‑1 (MQ=60)

           CACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGT                                                                                    >  SRR4302533.4153924/1‑94 (MQ=60)

            ACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTG                                                                                   >  SRR4302533.1311974/1‑94 (MQ=60)

            ACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTG                                                                                   >  SRR4302533.2001332/1‑94 (MQ=60)

              CGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGAT                                                                                 <  SRR4302533.5302623/94‑1 (MQ=60)

              CGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGAT                                                                                 <  SRR4302533.2516467/94‑1 (MQ=60)

               GTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATG                                                                                >  SRR4302533.4248795/1‑94 (MQ=60)

               GTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATG                                                                                >  SRR4302533.2720065/1‑94 (MQ=60)

               GTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATG                                                                                <  SRR4302533.6256722/94‑1 (MQ=60)

               GTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATG                                                                                >  SRR4302533.2275781/1‑94 (MQ=60)

                TACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGT                                                                               >  SRR4302533.2317584/1‑94 (MQ=60)

                 ACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTA                                                                              >  SRR4302533.1254573/1‑94 (MQ=60)

                  CTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTAC                                                                             <  SRR4302533.1424166/94‑1 (MQ=60)

                  CTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTAC                                                                             <  SRR4302533.5620827/94‑1 (MQ=60)

                   TGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACG                                                                            >  SRR4302533.4742878/1‑94 (MQ=60)

                   TGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACG                                                                            <  SRR4302533.1468506/94‑1 (MQ=60)

                    GGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGG                                                                           <  SRR4302533.1386735/94‑1 (MQ=60)

                    GGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGG                                                                           <  SRR4302533.5665069/94‑1 (MQ=60)

                    GGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGG                                                                           <  SRR4302533.5508746/94‑1 (MQ=60)

                       AGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCA                                                                        <  SRR4302533.4057317/94‑1 (MQ=60)

                       AGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCA                                                                        >  SRR4302533.3438559/1‑94 (MQ=60)

                       AGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCA                                                                        >  SRR4302533.4422697/1‑94 (MQ=60)

                       AGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGCATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGCCA                                                                        >  SRR4302533.3793975/1‑94 (MQ=60)

                        GTGGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCAT                                                                       <  SRR4302533.1534375/94‑1 (MQ=60)

                         TTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATG                                                                      <  SRR4302533.1836266/94‑1 (MQ=60)

                           GCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTG                                                                    >  SRR4302533.790252/1‑94 (MQ=60)

                            CGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGA                                                                   >  SRR4302533.2298804/1‑94 (MQ=60)

                            CGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGA                                                                   >  SRR4302533.1020500/1‑94 (MQ=60)

                            CGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGA                                                                   <  SRR4302533.4660547/94‑1 (MQ=60)

                             GGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAA                                                                  >  SRR4302533.2515612/1‑94 (MQ=60)

                              GTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAG                                                                 <  SRR4302533.3574809/94‑1 (MQ=60)

                              GTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAG                                                                 <  SRR4302533.2222744/94‑1 (MQ=60)

                               TAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGA                                                                <  SRR4302533.5723204/94‑1 (MQ=60)

                                AATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAA                                                               >  SRR4302533.3020662/1‑94 (MQ=60)

                                 ATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAAC                                                              >  SRR4302533.3589359/1‑94 (MQ=60)

                                 ATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAAC                                                              <  SRR4302533.5491027/94‑1 (MQ=60)

                                 ATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAAC                                                              >  SRR4302533.1129587/1‑94 (MQ=60)

                                 ATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAAC                                                              >  SRR4302533.4703573/1‑94 (MQ=60)

                                 ATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAAC                                                              <  SRR4302533.5839067/94‑1 (MQ=60)

                                  TCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACT                                                             <  SRR4302533.5958936/94‑1 (MQ=60)

                                   CGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTA                                                            <  SRR4302533.2079035/94‑1 (MQ=60)

                                    GCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAA                                                           >  SRR4302533.2682584/1‑94 (MQ=60)

                                      CGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACA                                                         >  SRR4302533.5861382/1‑94 (MQ=60)

                                      CGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACA                                                         >  SRR4302533.772876/1‑94 (MQ=60)

                                      CGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACA                                                         >  SRR4302533.4195985/1‑94 (MQ=60)

                                       GAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAA                                                        >  SRR4302533.5275329/1‑94 (MQ=60)

                                        AAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAAT                                                       <  SRR4302533.6033848/94‑1 (MQ=60)

                                        AAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAAT                                                       <  SRR4302533.5172356/94‑1 (MQ=60)

                                           AGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACG                                                    >  SRR4302533.1627054/1‑94 (MQ=60)

                                            GGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGA                                                   <  SRR4302533.4073298/94‑1 (MQ=60)

                                              CCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATC                                                 >  SRR4302533.4780355/1‑94 (MQ=60)

                                              CCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATC                                                 >  SRR4302533.2214428/1‑94 (MQ=60)

                                               CAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCC                                                >  SRR4302533.5890321/1‑94 (MQ=60)

                                                AGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCA                                               >  SRR4302533.5982725/1‑94 (MQ=60)

                                                AGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCA                                               >  SRR4302533.5227749/1‑94 (MQ=60)

                                                 GCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCAT                                              <  SRR4302533.4610711/94‑1 (MQ=60)

                                                  CGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATT                                             >  SRR4302533.13005/1‑94 (MQ=60)

                                                   GTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTG                                            >  SRR4302533.2187100/1‑94 (MQ=60)

                                                   GTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTG                                            >  SRR4302533.2310244/1‑94 (MQ=60)

                                                    TCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGA                                           >  SRR4302533.5397945/1‑94 (MQ=60)

                                                     CAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAG                                          <  SRR4302533.3937245/94‑1 (MQ=60)

                                                          TCAGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACT                                     <  SRR4302533.4531624/94‑1 (MQ=60)

                                                            AGCAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCT                                   <  SRR4302533.3761548/94‑1 (MQ=60)

                                                              CAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCT                                 <  SRR4302533.5540417/94‑1 (MQ=60)

                                                              CAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCT                                 >  SRR4302533.6286358/1‑94 (MQ=60)

                                                              CAGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCT                                 <  SRR4302533.563749/94‑1 (MQ=60)

                                                               AGAAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATTCATTGAGTCAATCTCTA                                >  SRR4302533.2065815/1‑94 (MQ=60)

                                                                 AAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATG                              >  SRR4302533.2994465/1‑94 (MQ=60)

                                                                 AAAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATG                              >  SRR4302533.348605/1‑94 (MQ=60)

                                                                  AAATAGGTATTACGCAGCACCTTATGGGTGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGA                             >  SRR4302533.457783/1‑94 (MQ=60)

                                                                  AAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAGCAATACGATCCATTGAGTCACTCTCTATGA                             <  SRR4302533.536278/94‑1 (MQ=60)

                                                                  AAATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGA                             >  SRR4302533.126773/1‑94 (MQ=60)

                                                                   AATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGAC                            <  SRR4302533.725659/94‑1 (MQ=60)

                                                                   AATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGAC                            >  SRR4302533.4745455/1‑94 (MQ=60)

                                                                    ATAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGACA                           >  SRR4302533.2161823/1‑94 (MQ=60)

                                                                     TAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGACAG                          >  SRR4302533.433781/1‑94 (MQ=60)

                                                                     TAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGACAG                          >  SRR4302533.2294333/1‑94 (MQ=60)

                                                                     TAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGACAG                          <  SRR4302533.1426657/94‑1 (MQ=60)

                                                                     TAGGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGACAG                          >  SRR4302533.2339089/1‑94 (MQ=60)

                                                                       GGTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGACAGAT                        <  SRR4302533.1446586/94‑1 (MQ=60)

                                                                        GTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGACAGATG                       <  SRR4302533.1028656/94‑1 (MQ=60)

                                                                        GTATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGACAGATG                       >  SRR4302533.2397862/1‑94 (MQ=60)

                                                                         TATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGACAGATGT                      <  SRR4302533.4883684/94‑1 (MQ=60)

                                                                         TATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGACAGATGT                      >  SRR4302533.3165536/1‑94 (MQ=60)

                                                                         TATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGACAGATGT                      <  SRR4302533.3310246/94‑1 (MQ=60)

                                                                          ATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGACAGATGTA                     >  SRR4302533.6176237/1‑94 (MQ=60)

                                                                          ATTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGACAGATGTA                     <  SRR4302533.2679078/94‑1 (MQ=60)

                                                                           TTACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGACAGATGTAA                    <  SRR4302533.2176739/94‑1 (MQ=60)

                                                                             ACGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGACAGATGTAATT                  >  SRR4302533.216394/1‑94 (MQ=60)

                                                                              CGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTGTATGACAGATGTAATTA                 <  SRR4302533.2733612/94‑1 (MQ=60)

                                                                              CGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGACAGATGTAATTA                 <  SRR4302533.3438814/94‑1 (MQ=60)

                                                                              CGCAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGACAGATGTAATTA                 >  SRR4302533.5966317/1‑94 (MQ=60)

                                                                                CAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGACAGATGTAATTAAT               <  SRR4302533.375642/94‑1 (MQ=60)

                                                                                CAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGACAGATGTAATTAAT               >  SRR4302533.3719860/1‑94 (MQ=60)

                                                                                CAGCACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGACAGATGTAATTAAT               >  SRR4302533.5115548/1‑94 (MQ=60)

                                                                                   CACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGACAGATGTAATTAATTCA            >  SRR4302533.2014957/1‑94 (MQ=60)

                                                                                   CACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGACAGATGTAATTAATTAA            >  SRR4302533.4702414/1‑94 (MQ=60)

                                                                                   CACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGACAGATGTAATTAATTAA            <  SRR4302533.3037268/94‑1 (MQ=60)

                                                                                    CCCTTATGGATGCTAAGCAGAGATGTACGGTCATGTCAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGACAGATGTAATTAATTAAG           <  SRR4302533.3150700/94‑1 (MQ=60)

                                                                                    ACCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGACAGATGTAATTAATTAAG           >  SRR4302533.4129398/1‑94 (MQ=60)

                                                                                     CCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGACAGATGTAATTAATTAAGC          >  SRR4302533.4398307/1‑94 (MQ=60)

                                                                                     CCTTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGACAGATGTAATTAATTAAGC          >  SRR4302533.2507197/1‑94 (MQ=60)

                                                                                       TTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGACAGATGTAATTAATTAAGCAG        >  SRR4302533.5622449/1‑94 (MQ=60)

                                                                                       TTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGACAGATGTAATTAATTAAGCAG        >  SRR4302533.4491526/1‑94 (MQ=60)

                                                                                       TTATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGACAGATGTAATTAATTAAGCAG        >  SRR4302533.2868039/1‑94 (MQ=60)

                                                                                        TATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGACAGATGTAATTAATTAAGCAGC       >  SRR4302533.3960216/1‑94 (MQ=60)

                                                                                        TATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGACAGATGTAATTAATTAAGCAGC       <  SRR4302533.5362558/94‑1 (MQ=60)

                                                                                         ATGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGACAGATGTAATTAATTAAGCAGCA      <  SRR4302533.2304539/94‑1 (MQ=60)

                                                                                          TGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGACAGATGTAATTAATTAAGCAGCAT     <  SRR4302533.1887816/94‑1 (MQ=60)

                                                                                          TGGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGACAGATGTAATTAATTAAGCAGCAT     <  SRR4302533.3484777/94‑1 (MQ=60)

                                                                                           GGATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGACAGATGTAATTAATTAAGCAGCATA    <  SRR4302533.5764954/94‑1 (MQ=60)

                                                                                            GATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGACAGATGTAATTAATTAAGCAGCATAA   <  SRR4302533.4168510/94‑1 (MQ=60)

                                                                                             ATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGACAGATGTAATTAATTAAGCAGCATAAT  <  SRR4302533.425508/94‑1 (MQ=60)

                                                                                             ATGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGACAGATGTAATTAATTAAGCAGCATAAT  >  SRR4302533.459139/1‑94 (MQ=60)

GGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGGTGCTAAGCAGTGATGTACGGTCATGTGAAGAACTAACAATACGATCCATTGAGTCACTCTCTATGACAGATGTAATTAATTAAGCAGCATAAT  >  NC_000913/1030499‑1030685

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`