Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,233,892 |
A→G |
S17P (TCC→CCC) |
nhaB ← |
Na+/H+ antiporter, pH independent |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,233,892 | 0 | A | G | 100.0%
| 571.9
/ NA
| 186 | S17P (TCC→CCC) | nhaB | Na+/H+ antiporter, pH independent |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (93/93); total (93/93) |
Only 100 of 201 total aligned reads displayed.
GCAACCAGCCCGCGACGAAAGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGACTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAAATAATCAATGATGTTTTTA > NC_000913/1233802‑1233981
|
gCAACCAGCCCGCGACGAAAGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCt < 2:320822/93‑1 (MQ=255)
gCAACCAGCCCGCGACGAAAGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCt > 1:4226821/1‑93 (MQ=255)
cAACCAGCCCGCGACGAAAGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTg > 1:1165673/1‑93 (MQ=255)
cAACCAGCCCGCGACGAAAGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTg < 2:4205507/93‑1 (MQ=255)
aaCCAGCCCGCGACGAAAGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTgg > 2:6065977/1‑93 (MQ=255)
aCCAGCCCGCGACGAAAGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGc > 1:1109284/1‑93 (MQ=255)
aCCAGCCCGCGACGAAAGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGc > 2:4958345/1‑93 (MQ=255)
aCCAGCCCGCGACGAAAGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGc > 1:912763/1‑93 (MQ=255)
ccAGCCCGCGACGAAAGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGcc > 2:3036768/1‑93 (MQ=255)
ccAGCCCGCGACGAAAGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGGTTGTACCAGTCGGGGGGCTGGcc > 2:3962532/1‑93 (MQ=255)
cccGCGACGAAAGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCaaa > 2:5153797/1‑93 (MQ=255)
ccGCGACGAAAGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCaaaa > 2:2653710/1‑93 (MQ=255)
gacgaAAGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAAtt < 1:6222043/93‑1 (MQ=255)
gacgaAAGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAAtt < 1:6287234/93‑1 (MQ=255)
gacgaAAGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAAtt > 1:3280627/1‑93 (MQ=255)
cgaAAGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTgc < 2:1999878/93‑1 (MQ=255)
cgaAAGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTgc > 1:3316570/1‑93 (MQ=255)
gaAAGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTgcg > 2:655949/1‑93 (MQ=255)
aaaGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTgcgc < 1:5471150/93‑1 (MQ=255)
aaaGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTgcgc > 2:3774200/1‑93 (MQ=255)
aaaGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTgcgc < 1:4671154/93‑1 (MQ=255)
aaGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGcc < 2:1162761/93‑1 (MQ=255)
aGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCa > 2:5497300/1‑93 (MQ=255)
gggCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCAt > 2:756683/1‑93 (MQ=255)
ggCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATa < 2:4046839/93‑1 (MQ=255)
ggCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATa < 1:2409064/93‑1 (MQ=255)
gCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAg < 1:3127304/93‑1 (MQ=255)
cTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAgc < 2:2491864/93‑1 (MQ=255)
cTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAgc < 2:3292314/93‑1 (MQ=255)
tgatgaGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAgcg > 1:549880/1‑93 (MQ=255)
gatgaGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAgcgc > 2:4751789/1‑93 (MQ=255)
gatgaGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAgcgc > 2:5633602/1‑93 (MQ=255)
gatgaGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAgcgc > 1:1843240/1‑93 (MQ=255)
gatgaGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAgcgc > 1:471271/1‑93 (MQ=255)
atgaGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAgcgcg < 2:5270456/93‑1 (MQ=255)
gaGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGcgcgcg > 1:1018312/1‑93 (MQ=255)
gaGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGcgcgcg > 1:2174361/1‑93 (MQ=255)
aGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCgg > 2:4508387/1‑93 (MQ=255)
ggAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGc < 1:2853471/93‑1 (MQ=255)
aaaaTTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGccc > 2:3575834/1‑93 (MQ=255)
aaaaTTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGccc > 2:5699388/1‑93 (MQ=255)
aaTTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCa < 2:1006846/93‑1 (MQ=255)
aTTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAg < 1:5491301/93‑1 (MQ=255)
aTTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAg > 2:1607699/1‑93 (MQ=255)
ttAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAgg > 1:5661711/1‑93 (MQ=255)
ttAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAgg < 1:3588393/93‑1 (MQ=255)
ttAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAgg < 1:537879/93‑1 (MQ=255)
tAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGga > 1:2693634/1‑93 (MQ=255)
aaCGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGgag > 1:3522787/1‑93 (MQ=255)
aCGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGgaga < 2:1072319/93‑1 (MQ=255)
ggttttACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGAtc < 2:3459020/90‑1 (MQ=255)
gggTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGAtc > 1:3487961/1‑93 (MQ=255)
ggTATACGAGTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGAtct < 1:2760915/93‑1 (MQ=255)
gTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGAtctc > 1:158498/1‑93 (MQ=255)
ttACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCa < 2:893973/93‑1 (MQ=255)
cGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCatga > 1:1499689/1‑93 (MQ=255)
cGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCatga > 2:5603708/1‑93 (MQ=255)
gATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCatgat < 1:1671903/93‑1 (MQ=255)
gATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCatgat < 2:4784407/93‑1 (MQ=255)
aTTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGTCCCAGGAGATCTCCatgatg > 2:6297920/1‑93 (MQ=255)
aTTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCatgatg < 1:578110/93‑1 (MQ=255)
tAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGt > 2:1717949/1‑93 (MQ=255)
tAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGt < 1:3815041/93‑1 (MQ=255)
tAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGt < 2:285258/93‑1 (MQ=255)
aaaGAAATTGATGAGGGCGAGTTTTTACCAGTCGGGGGACTGGCCAAAAAAATTGCGCCAGAGCGCGCGGCCCCAGGAGATCTCCATGATGGt < 2:45502/92‑1 (MQ=255)
aaGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGtt < 2:431919/93‑1 (MQ=255)
aaGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGtt > 2:1898831/1‑93 (MQ=255)
aaaaTGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTcc < 1:5821262/93‑1 (MQ=255)
aaTGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCcct < 1:4002963/93‑1 (MQ=255)
tgatgaGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCcctta < 1:4267818/93‑1 (MQ=255)
gatgaGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCccttac < 2:2034485/93‑1 (MQ=255)
gatgaGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCccttac > 2:4004520/1‑93 (MQ=255)
atgaGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCccttacc > 2:5836227/1‑93 (MQ=255)
tgaGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCccttacct > 1:4966219/1‑93 (MQ=255)
gaGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCccttacctt < 1:3358396/93‑1 (MQ=255)
gaGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCccttacctt > 2:2428216/1‑93 (MQ=255)
gggCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATTGTTTCCcttaccttac > 1:1156515/1‑93 (MQ=255)
gggCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCcttaccttac < 1:5255825/93‑1 (MQ=255)
gCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACaa > 1:5584544/1‑93 (MQ=255)
cGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACaaa < 2:5087989/93‑1 (MQ=255)
cGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACaaa < 1:5424662/93‑1 (MQ=255)
gAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAaat < 2:447227/93‑1 (MQ=255)
aGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAaata < 2:5986919/93‑1 (MQ=255)
tttGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAaataat > 1:5037061/1‑93 (MQ=255)
tGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAAATAATCa < 1:4384044/93‑1 (MQ=255)
gTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAAATAATCaa < 1:2733735/93‑1 (MQ=255)
gTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAAATAATCaa > 2:2297689/1‑93 (MQ=255)
aCCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAAATAATCAatg < 1:3677959/93‑1 (MQ=255)
ccAGTCGGTGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAAATAATCAatga < 2:2531994/93‑1 (MQ=255)
ccAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAAATAATCAatga < 1:4162391/93‑1 (MQ=255)
cAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAAATAATCAatgat < 1:2438959/93‑1 (MQ=255)
cAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAAATAATCAatgat < 1:5624016/93‑1 (MQ=255)
aGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAAATAATCAatgatg > 1:3637755/1‑93 (MQ=255)
gTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAAATAATCAATGATGt < 2:140518/93‑1 (MQ=255)
gTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAAATAATCAATGATGt > 2:1224219/1‑93 (MQ=255)
tCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAAATAATCAATGATGtt < 1:6197152/93‑1 (MQ=255)
ggggggCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAAATAATCAATGATGtttt < 1:1218526/93‑1 (MQ=255)
ggggGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAAATAATCAATGATGttttt > 1:2027247/1‑93 (MQ=255)
ggggGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAAATAATCAATGATGttttt < 1:104295/93‑1 (MQ=255)
ggggCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAAATAATCAATGATGTTTTTa > 2:6240136/1‑93 (MQ=255)
|
GCAACCAGCCCGCGACGAAAGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGACTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAAATAATCAATGATGTTTTTA > NC_000913/1233802‑1233981
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CCAGCAACCAGCCCGCGACGAAAGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGACTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAAATAATCAATGATGTTTTTATGTT > NC_000913/1233799‑1233985
|
CCAGCAACCAGCCCGCGACGAAAGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGG > SRR4302533.2149173/1‑94 (MQ=60)
CAGCAACCAGCCCGCGACGAAAGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGC > SRR4302533.1097086/1‑94 (MQ=60)
AGCAACCAGCCCGCGACGAAAGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCT > SRR4302533.4252380/1‑94 (MQ=60)
AGCAACCAGCCCGCGACGAAAGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCT < SRR4302533.4161523/94‑1 (MQ=60)
GCAACCAGCCCGCGACGAAAGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTG > SRR4302533.1172661/1‑94 (MQ=60)
CAACCAGCCCGCGACGAAAGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGG < SRR4302533.1667121/94‑1 (MQ=60)
AACCAGCCCGCGACGAAAGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGC > SRR4302533.918118/1‑94 (MQ=60)
AACCAGCCCGCGACGAAAGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGC > SRR4302533.1115868/1‑94 (MQ=60)
CCGCGACGAAAGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAA > SRR4302533.2632140/1‑94 (MQ=60)
CCGCGACGAAAGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAA > SRR4302533.2288352/1‑94 (MQ=60)
CGACGAAAGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATT > SRR4302533.3300879/1‑94 (MQ=60)
GACGAAAGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTG > SRR4302533.4298795/1‑94 (MQ=60)
GACGAAAGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTG < SRR4302533.1265795/94‑1 (MQ=60)
GACGAAAGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTG < SRR4302533.6259335/94‑1 (MQ=60)
GACGAAAGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTG < SRR4302533.6324743/94‑1 (MQ=60)
ACGAAAGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGC > SRR4302533.3337051/1‑94 (MQ=60)
ACGAAAGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGC > SRR4302533.5296089/1‑94 (MQ=60)
GAAAGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGC > SRR4302533.4276282/1‑94 (MQ=60)
AAAGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCC < SRR4302533.4699461/94‑1 (MQ=60)
AAAGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCC < SRR4302533.5504121/94‑1 (MQ=60)
GGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAG < SRR4302533.2423946/94‑1 (MQ=60)
GCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGC < SRR4302533.1225459/94‑1 (MQ=60)
GCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGC < SRR4302533.3146528/94‑1 (MQ=60)
GCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGC < SRR4302533.5475729/94‑1 (MQ=60)
CTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCG > SRR4302533.3562057/1‑94 (MQ=60)
CTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCG > SRR4302533.553144/1‑94 (MQ=60)
CTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCG > SRR4302533.6234970/1‑94 (MQ=60)
TGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGC > SRR4302533.1854481/1‑94 (MQ=60)
TGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGC > SRR4302533.474092/1‑94 (MQ=60)
GATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCG < SRR4302533.1802348/94‑1 (MQ=60)
ATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGC > SRR4302533.4904591/1‑94 (MQ=60)
ATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGC > SRR4302533.4739803/1‑94 (MQ=60)
TGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCG > SRR4302533.1024297/1‑94 (MQ=60)
TGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCG > SRR4302533.2187760/1‑94 (MQ=60)
GAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGG > SRR4302533.5510581/1‑94 (MQ=60)
GGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCC < SRR4302533.2871026/94‑1 (MQ=60)
GGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCC > SRR4302533.3669664/1‑94 (MQ=60)
AAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCGCAAAAAATTGCGCCATAGCGCGCGGCACCA > SRR4302533.2121960/1‑94 (MQ=60)
AATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAG < SRR4302533.552817/94‑1 (MQ=60)
ATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGG < SRR4302533.5524427/94‑1 (MQ=60)
ATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGG > SRR4302533.5695919/1‑94 (MQ=60)
TTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGTGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGA < SRR4302533.4461823/94‑1 (MQ=60)
TTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGA > SRR4302533.2710136/1‑94 (MQ=60)
TTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGA < SRR4302533.541079/94‑1 (MQ=60)
TTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGA < SRR4302533.3610490/94‑1 (MQ=60)
TAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAG > SRR4302533.3544502/1‑94 (MQ=60)
AACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGA > SRR4302533.2022794/1‑94 (MQ=60)
ACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGAT < SRR4302533.1038785/94‑1 (MQ=60)
ACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGAT < SRR4302533.2723928/94‑1 (MQ=60)
CGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATC > SRR4302533.3509469/1‑94 (MQ=60)
CGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATC > SRR4302533.3329777/1‑94 (MQ=60)
GGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTC > SRR4302533.159510/1‑94 (MQ=60)
GGTATACGAGTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTC < SRR4302533.2777836/94‑1 (MQ=60)
GTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCC < SRR4302533.5774985/94‑1 (MQ=60)
TATGATAAAGAAAATGTTGAGGGTGGGTTTGTACCGGTCGGGGGGCGGGCCCAAAAAATGGCGCCTTAGCGCGCGGCCCCAGGAGATCTCCATG < SRR4302533.5372635/94‑1 (MQ=48)
ACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGA > SRR4302533.1508729/1‑94 (MQ=60)
GATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATG < SRR4302533.1682009/94‑1 (MQ=60)
ATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGG < SRR4302533.581520/94‑1 (MQ=60)
ATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCCCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGG < SRR4302533.3362741/94‑1 (MQ=60)
TAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTT > SRR4302533.4145265/1‑94 (MQ=60)
TAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTT < SRR4302533.3838370/94‑1 (MQ=60)
TAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTT < SRR4302533.3543496/94‑1 (MQ=60)
AAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGGGCCAGGAGATCTCCATGATGGTTTCCC > SRR4302533.5613055/1‑94 (MQ=60)
AAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCC < SRR4302533.5856425/94‑1 (MQ=60)
AAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCT > SRR4302533.3481489/1‑94 (MQ=60)
AATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTT < SRR4302533.4027338/94‑1 (MQ=60)
AATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTT > SRR4302533.4196341/1‑94 (MQ=60)
AATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTT > SRR4302533.804475/1‑94 (MQ=60)
TGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTAC < SRR4302533.5083201/94‑1 (MQ=60)
TGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTAC < SRR4302533.4293514/94‑1 (MQ=60)
GATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACC < SRR4302533.5672635/94‑1 (MQ=60)
ATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCT < SRR4302533.2442323/94‑1 (MQ=60)
ATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCT > SRR4302533.4996326/1‑94 (MQ=60)
GAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTA < SRR4302533.3379149/94‑1 (MQ=60)
AGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATTGTTTCCCTTACCTTAC > SRR4302533.1163453/1‑94 (MQ=60)
AGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTAC < SRR4302533.5434139/94‑1 (MQ=60)
AGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATCGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTAC > SRR4302533.1548004/1‑94 (MQ=60)
GGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACA < SRR4302533.5287394/94‑1 (MQ=60)
GGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACA < SRR4302533.503475/94‑1 (MQ=60)
GGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAA > SRR4302533.5618286/1‑94 (MQ=60)
GCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAAA > SRR4302533.1139858/1‑94 (MQ=60)
CGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAAAT < SRR4302533.5457333/94‑1 (MQ=60)
AGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAAATAA > SRR4302533.1166406/1‑94 (MQ=60)
GTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAAATAAT > SRR4302533.5067563/1‑94 (MQ=60)
GTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAAATAAT < SRR4302533.2952019/94‑1 (MQ=60)
GTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAAATAAT > SRR4302533.2852943/1‑94 (MQ=60)
TTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAAATAATC < SRR4302533.5655975/94‑1 (MQ=60)
TTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAAATAATCA > SRR4302533.5960473/1‑94 (MQ=60)
TTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAAATAATCA > SRR4302533.3752161/1‑94 (MQ=60)
TGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAAATAATCAA < SRR4302533.4410512/94‑1 (MQ=60)
TGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAAATAATCAA < SRR4302533.3269062/94‑1 (MQ=60)
gttaCAGTCGGGGGGGTGGCCCAAAAAATTGCGCCATAGCTCGCAGCCCCAGGAAATCTCCATGATGGTTTCCCTTACCTTACAAATAATCAAT < SRR4302533.5947681/90‑1 (MQ=60)
GTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAAATAATCAAT < SRR4302533.1056050/94‑1 (MQ=60)
GTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAAATAATCAAT < SRR4302533.2750503/94‑1 (MQ=60)
ACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAAATAATCAATGA < SRR4302533.3700566/94‑1 (MQ=60)
CCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAAATAATCAATGAT < SRR4302533.2768988/94‑1 (MQ=60)
CCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAAATAATCAATGAT < SRR4302533.4187613/94‑1 (MQ=60)
CAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAAATAATCAATGATG < SRR4302533.2454021/94‑1 (MQ=60)
CAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAAATAATCAATGATG < SRR4302533.5658010/94‑1 (MQ=60)
CAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAAATAATCAATGATG > SRR4302533.3660120/1‑94 (MQ=60)
CAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAAATAATCAATGATG > SRR4302533.3660119/1‑94 (MQ=60)
GTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAAATAATCAATGATGTT > SRR4302533.3876156/1‑94 (MQ=60)
TCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAAATAATCAATGATGTTT < SRR4302533.6234331/94‑1 (MQ=60)
TCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAAATAATCAATGATGTTT < SRR4302533.6303833/94‑1 (MQ=60)
GGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAAATAATCAATGATGTTTTT < SRR4302533.1225843/94‑1 (MQ=60)
GGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAAATAATCAATGATGTTTTT > SRR4302533.2039763/1‑94 (MQ=60)
GGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAAATAATCAATGATGTTTTTA < SRR4302533.104947/94‑1 (MQ=60)
GGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAAATAATCAATGATGTTTTTAT < SRR4302533.5825651/94‑1 (MQ=60)
GGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAAATAATCAATGATGTTTTTATG > SRR4302533.6330770/1‑94 (MQ=60)
GGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAAATAATCAATGATGTTTTTATGT < SRR4302533.5871494/94‑1 (MQ=60)
GCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAAATAATCAATGATGTTTTTATGTT > SRR4302533.2460299/1‑94 (MQ=60)
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CCAGCAACCAGCCCGCGACGAAAGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGACTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAAATAATCAATGATGTTTTTATGTT > NC_000913/1233799‑1233985
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
