Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,243,418	T→C	V111V (GTA→GTG)	ycgR ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,243,418	0	T	C	100.0%	799.5 / NA	249	V111V (GTA→GTG)	ycgR	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (146/103); total (146/103)

Only 100 of 261 total aligned reads displayed.

GAAACGTAACGTACTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGTACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAGTTGTTCAACAGTAAACTCGAC  >  NC_000913/1243328‑1243507

gAAACGTAACGTACTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCAc                                                                                         >  1:1676902/1‑93 (MQ=255)

     gtaacgtaCTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAAcc                                                                                    <  1:2872353/93‑1 (MQ=255)

      taacgtaCTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCa                                                                                   <  1:1991343/93‑1 (MQ=255)

       aacgtaCTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCAt                                                                                  <  2:5686570/93‑1 (MQ=255)

       aacgtaCTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCAt                                                                                  >  2:2108205/1‑93 (MQ=255)

        acgtaCTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATa                                                                                 >  2:5581950/1‑93 (MQ=255)

        acgtaCTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATa                                                                                 <  1:301326/93‑1 (MQ=255)

        acgtaCTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATa                                                                                 <  2:4638601/93‑1 (MQ=255)

         cgtaCTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATaa                                                                                >  2:5811736/1‑93 (MQ=255)

         agtaCTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATaa                                                                                <  2:3103234/92‑1 (MQ=255)

           taCTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAgg                                                                              >  1:5783936/1‑93 (MQ=255)

           taCTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAgg                                                                              >  1:249346/1‑93 (MQ=255)

           taCTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAgg                                                                              >  1:4183282/1‑93 (MQ=255)

           taCTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAgg                                                                              <  2:2780946/93‑1 (MQ=255)

             cTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTg                                                                            >  2:1150773/1‑93 (MQ=255)

               gTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAgggggg                                                                          >  1:787328/1‑93 (MQ=255)

               gTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTggg                                                                          >  2:2402480/1‑93 (MQ=255)

               gTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTggg                                                                          <  1:3537037/93‑1 (MQ=255)

                ttATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGa                                                                         <  1:3604838/93‑1 (MQ=255)

                 tATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAg                                                                        >  1:5839098/1‑93 (MQ=255)

                 tATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAg                                                                        <  2:6053733/93‑1 (MQ=255)

                  aTCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAgg                                                                       >  2:49527/1‑93 (MQ=255)

                  aTCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAgg                                                                       >  1:5264110/1‑93 (MQ=255)

                   tCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCCTAAGGTGGGAGGc                                                                      >  2:2626702/1‑93 (MQ=255)

                   tCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGc                                                                      <  1:2604911/93‑1 (MQ=255)

                   tCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGc                                                                      <  1:3730753/93‑1 (MQ=255)

                   tCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGc                                                                      >  2:3284197/1‑93 (MQ=255)

                     cGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGcgg                                                                    >  1:2183361/1‑93 (MQ=255)

                     cGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGcgg                                                                    >  1:1191515/1‑93 (MQ=255)

                      gCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGcggt                                                                   >  2:2054223/1‑93 (MQ=255)

                       ccAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGcggta                                                                  >  1:3830211/1‑93 (MQ=255)

                        cAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGcggtac                                                                 >  1:600557/1‑93 (MQ=255)

                        cAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGcggtac                                                                 <  2:13571/93‑1 (MQ=255)

                        cAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGcggtac                                                                 <  1:919386/93‑1 (MQ=255)

                         aGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGcggtacg                                                                <  2:1587727/93‑1 (MQ=255)

                          gTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGcggtacgg                                                               >  2:1340608/1‑93 (MQ=255)

                            ttGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGcggtacggta                                                             >  1:1938123/1‑93 (MQ=255)

                            ttGGTCGCGCAAAATGAAGGCGGATGGAGTGGGACGGAGATGCGAAAATATCGGCGTTGTTGCTCAAGCCATAAGGTGGGAGGcggtacggta                                                             <  2:3880489/93‑1 (MQ=255)

                             tGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGtaa                                                            <  1:3233151/93‑1 (MQ=255)

                                tCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGtaataa                                                         >  1:5964752/1‑93 (MQ=255)

                                  tGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAAt                                                       >  1:1874383/1‑93 (MQ=255)

                                  tGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAAt                                                       <  2:372610/93‑1 (MQ=255)

                                     cAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGcc                                                    <  1:5198916/93‑1 (MQ=255)

                                      aaaaaTAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCg                                                   <  2:5069431/93‑1 (MQ=255)

                                         aaTAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGaa                                                <  1:3684028/93‑1 (MQ=255)

                                         aaTAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGaa                                                >  2:660073/1‑93 (MQ=255)

                                           tAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACTAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGc                                              <  1:4435422/93‑1 (MQ=255)

                                           tAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGc                                              >  2:4742669/1‑93 (MQ=255)

                                             aGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTg                                            <  2:3926444/93‑1 (MQ=255)

                                             aGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTg                                            <  1:1585766/93‑1 (MQ=255)

                                             aGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTg                                            >  1:3090237/1‑93 (MQ=255)

                                                  gATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGt                                       >  1:5476912/1‑93 (MQ=255)

                                                  gATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGt                                       >  2:3375861/1‑93 (MQ=255)

                                                  gATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGt                                       >  2:2298846/1‑93 (MQ=255)

                                                  gATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGt                                       >  1:1911562/1‑93 (MQ=255)

                                                      gAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTc                                   <  2:5782869/93‑1 (MQ=255)

                                                        gTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCAc                                 >  1:4732475/1‑93 (MQ=255)

                                                         tGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCAct                                >  2:2930921/1‑93 (MQ=255)

                                                          ggggCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCActc                               <  2:2003457/93‑1 (MQ=255)

                                                          ggggCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCActc                               <  1:1210905/93‑1 (MQ=255)

                                                          ggggCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCActc                               >  2:2168571/1‑93 (MQ=255)

                                                          ggggCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCActc                               <  2:5601128/93‑1 (MQ=255)

                                                          ggggCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCActc                               >  1:564908/1‑93 (MQ=255)

                                                              gggAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTctgct                           <  2:1758918/92‑1 (MQ=255)

                                                               ggAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTctgctg                          <  1:632008/93‑1 (MQ=255)

                                                               cgagaTGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTctgctg                          <  1:4136976/92‑1 (MQ=255)

                                                                gagaTGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGt                         >  1:1074550/1‑93 (MQ=255)

                                                                gagaTGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGt                         >  2:4851172/1‑93 (MQ=255)

                                                                gagaTGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGt                         >  2:5260304/1‑93 (MQ=255)

                                                                gagaTGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGt                         >  1:1399426/1‑93 (MQ=255)

                                                                gagaTGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGt                         >  1:2934512/1‑93 (MQ=255)

                                                                gagaTGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGGGGGAGGCGGTACGGAAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGt                         >  1:4612606/1‑93 (MQ=255)

                                                                 agaTGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTa                        >  1:3437161/1‑93 (MQ=255)

                                                                  gaTGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAg                       >  1:1060355/1‑93 (MQ=255)

                                                                   aTGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAgt                      <  1:2262522/93‑1 (MQ=255)

                                                                   aTGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAgt                      <  2:4270402/93‑1 (MQ=255)

                                                                      cGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAgttgt                   <  2:5332693/93‑1 (MQ=255)

                                                                        gAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAGTTGTTc                 >  1:2096281/1‑93 (MQ=255)

                                                                        gAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAGTTGTTc                 >  2:414492/1‑93 (MQ=255)

                                                                        gAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAGTTGTTc                 >  2:4596297/1‑93 (MQ=255)

                                                                         aaaTATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAGTTGTTCa                <  1:5118616/93‑1 (MQ=255)

                                                                          aaTATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAGTTGTTCaa               >  2:3688699/1‑93 (MQ=255)

                                                                           atatCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAGTTGTTCAAc              >  2:1034166/1‑93 (MQ=255)

                                                                           atatCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAGGTGTTCAAc              <  2:6126937/93‑1 (MQ=255)

                                                                            tatCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAGTTGTTCAACa             >  2:245222/1‑93 (MQ=255)

                                                                             atCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAGTTGTTCAACAg            >  2:2708044/1‑93 (MQ=255)

                                                                              tCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAGTTGTTCAACAGt           >  2:3537832/1‑93 (MQ=255)

                                                                                 gCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAGTTGTTCAACAGTaaa        <  1:6122446/93‑1 (MQ=255)

                                                                                 gCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAGTTGTTCAACAGTaaa        >  2:4316931/1‑93 (MQ=255)

                                                                                  ggtcgtTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAGTTGTTCAACAGTAAAc       <  2:4009128/92‑1 (MQ=255)

                                                                                  cgtcgtTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAGTTGTTCAACAGTAAAc       <  1:5176912/93‑1 (MQ=255)

                                                                                  cgtcgtTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAGTTGTTCAACAGTAAAc       <  1:3928335/93‑1 (MQ=255)

                                                                                   gtcgtTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAGTTGTTCAACAGTAAACt      <  1:2192009/93‑1 (MQ=255)

                                                                                   gtcgtTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAGTTGTTCAACAGTAAACt      >  2:1466031/1‑93 (MQ=255)

                                                                                    tcgtTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAGTTGTTCAACAGTAAACTc     >  2:5380379/1‑93 (MQ=255)

                                                                                    tcgtTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAGTTGTTCAACAGTAAACTc     <  1:6221085/93‑1 (MQ=255)

                                                                                    tcgtTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAGTTGTTCAACAGTAAACTc     <  2:1232228/93‑1 (MQ=255)

                                                                                    tcgtTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAGTTGTTCAACAGTAAACTc     <  2:1434861/93‑1 (MQ=255)

                                                                                      gtTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAGTTGTTCAACAGTAAACTCGa   <  1:5379469/93‑1 (MQ=255)

                                                                                       ttGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAGTTGTTCAACAGTAAACTCGAc  >  2:4405489/1‑93 (MQ=255)

GAAACGTAACGTACTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGTACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAGTTGTTCAACAGTAAACTCGAC  >  NC_000913/1243328‑1243507

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGGAAACGTAACGTACTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGTACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAGTTGTTCAACAGTAAACTCGACTTTC  >  NC_000913/1243326‑1243511

CGGAAACGTAACGTACTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCA                                                                                              <  SRR4302533.3757034/94‑1 (MQ=60)

 GGAAACGTAACGTACTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCAC                                                                                             >  SRR4302533.1687056/1‑94 (MQ=60)

   AAACGTAACGTACTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAA                                                                                           >  SRR4302533.2107274/1‑94 (MQ=60)

    AACGTAACGTACTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAA                                                                                          >  SRR4302533.5991241/1‑94 (MQ=60)

    AACGTAACGTACTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAA                                                                                          >  SRR4302533.438800/1‑94 (MQ=60)

      CGTAACGTACTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACC                                                                                        <  SRR4302533.4006111/94‑1 (MQ=60)

       GTAACGTACTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCA                                                                                       <  SRR4302533.2890025/94‑1 (MQ=60)

        TAACGTACTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCAT                                                                                      <  SRR4302533.2003545/94‑1 (MQ=60)

        TAACGTACTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCAT                                                                                      <  SRR4302533.5793707/94‑1 (MQ=60)

        TAACGTACTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCAT                                                                                      <  SRR4302533.5442233/94‑1 (MQ=60)

          ACGTACTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAA                                                                                    <  SRR4302533.303168/94‑1 (MQ=60)

           CGTACTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAG                                                                                   >  SRR4302533.1076734/1‑94 (MQ=60)

           CGTACTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAG                                                                                   <  SRR4302533.2231883/94‑1 (MQ=60)

            GTACTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGG                                                                                  >  SRR4302533.5818867/1‑94 (MQ=60)

            GTACTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGG                                                                                  >  SRR4302533.250886/1‑94 (MQ=60)

            GTACTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGG                                                                                  >  SRR4302533.681361/1‑94 (MQ=60)

            GTACTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGG                                                                                  >  SRR4302533.4208613/1‑94 (MQ=60)

            GTACTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGG                                                                                  >  SRR4302533.1187135/1‑94 (MQ=60)

             TACTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGA                                                                                 >  SRR4302533.229865/1‑94 (MQ=60)

                TGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGG                                                                              >  SRR4302533.522433/1‑94 (MQ=60)

                TGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGGGGG                                                                              >  SRR4302533.791954/1‑94 (MQ=60)

                 GTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGA                                                                             <  SRR4302533.3558837/94‑1 (MQ=60)

                  TTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAG                                                                            <  SRR4302533.3627026/94‑1 (MQ=60)

                  TTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAG                                                                            <  SRR4302533.3846677/94‑1 (MQ=60)

                  TTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAG                                                                            >  SRR4302533.5874400/1‑94 (MQ=60)

                   TATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGG                                                                           >  SRR4302533.6255951/1‑94 (MQ=60)

                   TATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGG                                                                           <  SRR4302533.1417571/94‑1 (MQ=60)

                   TATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGG                                                                           >  SRR4302533.4737711/1‑94 (MQ=60)

                   TATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGG                                                                           >  SRR4302533.5295706/1‑94 (MQ=60)

                    ATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGC                                                                          >  SRR4302533.4750199/1‑94 (MQ=60)

                     TCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCG                                                                         <  SRR4302533.3753637/94‑1 (MQ=60)

                     TCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCG                                                                         <  SRR4302533.2620913/94‑1 (MQ=60)

                      CCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGG                                                                        >  SRR4302533.1198673/1‑94 (MQ=60)

                      CCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGG                                                                        >  SRR4302533.2196824/1‑94 (MQ=60)

                      CCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGG                                                                        >  SRR4302533.2497120/1‑94 (MQ=60)

                       CGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGT                                                                       <  SRR4302533.5820190/94‑1 (MQ=60)

                       CGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGT                                                                       >  SRR4302533.2913789/1‑94 (MQ=60)

                        GCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTA                                                                      >  SRR4302533.3853626/1‑94 (MQ=60)

                        GCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGCGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAATCATAAGGCGGGAGGCGGTA                                                                      >  SRR4302533.3684165/1‑94 (MQ=60)

                         CCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTAG                                                                     >  SRR4302533.4171072/1‑94 (MQ=60)

                         CCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTAC                                                                     >  SRR4302533.604087/1‑94 (MQ=60)

                         CCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTAC                                                                     >  SRR4302533.3009397/1‑94 (MQ=60)

                          CAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACG                                                                    <  SRR4302533.924786/94‑1 (MQ=60)

                             TTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTA                                                                 >  SRR4302533.1949938/1‑94 (MQ=60)

                             TTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTA                                                                 >  SRR4302533.3457580/1‑94 (MQ=60)

                               TGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAAT                                                               <  SRR4302533.2203829/94‑1 (MQ=60)

                               TGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAAT                                                               <  SRR4302533.3253074/94‑1 (MQ=60)

                                GGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATA                                                              >  SRR4302533.2969546/1‑94 (MQ=60)

                                 GTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAA                                                             >  SRR4302533.6000847/1‑94 (MQ=60)

                                   CTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAAT                                                           >  SRR4302533.1885805/1‑94 (MQ=60)

                                   CTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAAT                                                           <  SRR4302533.3476329/94‑1 (MQ=60)

                                     GGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGC                                                         >  SRR4302533.3068182/1‑94 (MQ=60)

                                      GCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGCACGGTAATAAATGCC                                                        >  SRR4302533.5931493/1‑94 (MQ=60)

                                       CAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCG                                                       <  SRR4302533.3896599/94‑1 (MQ=60)

                                       CAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCG                                                       <  SRR4302533.5230264/94‑1 (MQ=60)

                                       CAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCG                                                       <  SRR4302533.126011/94‑1 (MQ=60)

                                        AAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCATTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGG                                                      >  SRR4302533.5619948/1‑94 (MQ=60)

                                          AAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAA                                                    >  SRR4302533.5385300/1‑94 (MQ=60)

                                           AATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAG                                                   <  SRR4302533.3706670/94‑1 (MQ=60)

                                             TAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACTAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCT                                                 <  SRR4302533.4462233/94‑1 (MQ=60)

                                             TAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCT                                                 <  SRR4302533.351109/94‑1 (MQ=60)

                                              AAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTG                                                >  SRR4302533.3109237/1‑94 (MQ=60)

                                               AGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGC                                               <  SRR4302533.1595321/94‑1 (MQ=60)

                                                GGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCA                                              <  SRR4302533.1926225/94‑1 (MQ=60)

                                                  CGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAG                                            <  SRR4302533.4569488/94‑1 (MQ=60)

                                                  CGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAG                                            <  SRR4302533.537608/94‑1 (MQ=60)

                                                  CGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGGACGGTAATAAATGCCGGAAGCTGCAAG                                            >  SRR4302533.520369/1‑94 (MQ=60)

                                                   GGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGT                                           >  SRR4302533.5509925/1‑94 (MQ=60)

                                                   GGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGT                                           >  SRR4302533.1923225/1‑94 (MQ=60)

                                                   GGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGT                                           <  SRR4302533.1305383/94‑1 (MQ=60)

                                                    GATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTA                                          >  SRR4302533.113708/1‑94 (MQ=60)

                                                     ATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTAT                                         <  SRR4302533.1905638/94‑1 (MQ=60)

                                                      TGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATT                                        >  SRR4302533.2866554/1‑94 (MQ=60)

                                                       GGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAATCCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTC                                       <  SRR4302533.5621003/94‑1 (MQ=60)

                                                       GGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTC                                       <  SRR4302533.2273388/94‑1 (MQ=60)

                                                         AGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCAC                                     >  SRR4302533.4761164/1‑94 (MQ=60)

                                                          GTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACT                                    >  SRR4302533.6118208/1‑94 (MQ=60)

                                                           TGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTC                                   >  SRR4302533.568256/1‑94 (MQ=60)

                                                           TGGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTC                                   >  SRR4302533.2794/1‑94 (MQ=60)

                                                            GGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCT                                  >  SRR4302533.2579071/1‑94 (MQ=60)

                                                            GGGGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCT                                  <  SRR4302533.1218174/94‑1 (MQ=60)

                                                              GGCGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGC                                >  SRR4302533.4474352/1‑94 (MQ=60)

                                                                CGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTG                              >  SRR4302533.1601195/1‑94 (MQ=60)

                                                                CGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTG                              <  SRR4302533.1873587/94‑1 (MQ=60)

                                                                CGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTG                              <  SRR4302533.3836186/94‑1 (MQ=60)

                                                                CGGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTG                              >  SRR4302533.2167139/1‑94 (MQ=60)

                                                                 GGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGT                             >  SRR4302533.1080884/1‑94 (MQ=60)

                                                                 GGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGT                             <  SRR4302533.4205563/94‑1 (MQ=60)

                                                                 GGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGT                             >  SRR4302533.2952454/1‑94 (MQ=60)

                                                                 GGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGT                             >  SRR4302533.1407862/1‑94 (MQ=60)

                                                                 GGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGT                             <  SRR4302533.635728/94‑1 (MQ=60)

                                                                 GGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGGGGGAGGCGGTACGGAAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGT                             >  SRR4302533.4640551/1‑94 (MQ=60)

                                                                 CGAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGT                             <  SRR4302533.4162080/94‑1 (MQ=60)

                                                                  GAGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTA                            >  SRR4302533.3458391/1‑94 (MQ=60)

                                                                   AGATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAG                           >  SRR4302533.1066589/1‑94 (MQ=60)

                                                                     ATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAGTT                         <  SRR4302533.2276517/94‑1 (MQ=60)

                                                                     ATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAGTT                         <  SRR4302533.1215891/94‑1 (MQ=60)

                                                                     ATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAGTT                         >  SRR4302533.5198634/1‑94 (MQ=60)

                                                                     ATGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAGTT                         >  SRR4302533.3593376/1‑94 (MQ=60)

                                                                      TGCGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAGTTG                        <  SRR4302533.1962917/94‑1 (MQ=60)

                                                                        CGGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAGTTGTT                      >  SRR4302533.525725/1‑94 (MQ=60)

                                                                         GGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAGTTGTTC                     >  SRR4302533.2109187/1‑94 (MQ=60)

                                                                         GGAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAGTTGTTC                     <  SRR4302533.2173257/94‑1 (MQ=60)

                                                                          GAAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAGTTGTTCA                    <  SRR4302533.3685184/94‑1 (MQ=60)

                                                                           AAATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAGTTGTTCAA                   <  SRR4302533.5149542/94‑1 (MQ=60)

                                                                             ATATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAGTTGTTCAACA                 >  SRR4302533.3942199/1‑94 (MQ=60)

                                                                              TATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAGTTGTTCAACAG                >  SRR4302533.1972223/1‑94 (MQ=60)

                                                                              TATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAGTTGTTCAACAG                >  SRR4302533.1938655/1‑94 (MQ=60)

                                                                               ATCGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAGTTGTTCAACAGT               >  SRR4302533.3391206/1‑94 (MQ=60)

                                                                                 CGGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAGTTGTTCAACAGTAA             <  SRR4302533.3069411/94‑1 (MQ=60)

                                                                                  GGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAGTTGTTCAACAGTAAA            >  SRR4302533.5742342/1‑94 (MQ=60)

                                                                                  GGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAGTTGTTCAACAGTAAA            >  SRR4302533.825132/1‑94 (MQ=60)

                                                                                  GGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAGTTGTTCAACAGTAAA            <  SRR4302533.6030999/94‑1 (MQ=60)

                                                                                  GGCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCAGCTGTAGTTGTTCAACAGTAAA            >  SRR4302533.6146968/1‑94 (MQ=60)

                                                                                   GCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAGTTGTTCAACAGTAAAC           <  SRR4302533.6159361/94‑1 (MQ=60)

                                                                                   GCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAGTTGTTCAACAGTAAAC           <  SRR4302533.1813669/94‑1 (MQ=60)

                                                                                   GCGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAGTTGTTCAACAGTAAAC           <  SRR4302533.1519503/94‑1 (MQ=60)

                                                                                    CGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAGTTGTTCAACAGTAAACT          <  SRR4302533.5208179/94‑1 (MQ=60)

                                                                                    CGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAGTTGTTCAACAGTAAACT          >  SRR4302533.941030/1‑94 (MQ=60)

                                                                                    CGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAGTTGTTCAACAGTAAACT          >  SRR4302533.3730300/1‑94 (MQ=60)

                                                                                    CGTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAGTTGTTCAACAGTAAACT          <  SRR4302533.3952321/94‑1 (MQ=60)

                                                                                     GTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAGTTGTTCAACAGTAAACTC         <  SRR4302533.6188785/94‑1 (MQ=60)

                                                                                     GTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAGTTGTTCAACAGTAAACTC         >  SRR4302533.3192872/1‑94 (MQ=60)

                                                                                     GTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAGTTGTTCAACAGTAAACTC         <  SRR4302533.6331678/94‑1 (MQ=60)

                                                                                     GTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAGTTGTTCAACAGTAAACTC         <  SRR4302533.2205518/94‑1 (MQ=60)

                                                                                     GTCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAGTTGTTCAACAGTAAACTC         >  SRR4302533.4986367/1‑94 (MQ=60)

                                                                                      TCGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAGTTGTTCAACAGTAAACTCG        <  SRR4302533.6258376/94‑1 (MQ=60)

                                                                                       CGTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAGTTGTTCAACAGTAAACTCGA       >  SRR4302533.5233432/1‑94 (MQ=60)

                                                                                        GTTGCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAGTTGTTCAACAGTAAACTCGAC      <  SRR4302533.5411791/94‑1 (MQ=60)

                                                                                           GCACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGAATTCACTCTGCTGTAGTTGTTCAACAGTAAACTCGACTTT   >  SRR4302533.1407624/1‑94 (MQ=60)

                                                                                            CACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAGTTGTTCAACAGTAAACTCGACTTTC  <  SRR4302533.3346401/94‑1 (MQ=60)

                                                                                            CACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAGTTGTTCAACAGTAAACTCGACTTTC  <  SRR4302533.2325296/94‑1 (MQ=60)

CGGAAACGTAACGTACTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGTACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAGTTGTTCAACAGTAAACTCGACTTTC  >  NC_000913/1243326‑1243511

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 5 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`