Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,343,880	A→G	V296A (GTG→GCG)	yciR ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,343,880	0	A	G	100.0%	686.6 / NA	214	V296A (GTG→GCG)	yciR	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (92/122); total (92/122)

Only 100 of 219 total aligned reads displayed.

GAGGTGTTGGATGCCAGTACCAGAAACTCATCCCCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACACGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAAATCAAGATACACAACCCCAACT  >  NC_000913/1343790‑1343969

 aGGTGTTGGATGCCAGTACCAGAAACTCATCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGt                                                                                          >  2:4652098/1‑93 (MQ=255)

         gATGCCAGTACCAGAAACTCATCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGtaat                                                                                  <  1:813688/93‑1 (MQ=255)

          aTGCCAGTACCAGAAACTCATCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGtaata                                                                                 <  1:5197113/93‑1 (MQ=255)

          aTGCCAGTACCAGAAACTCATCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGtaata                                                                                 <  1:3867958/93‑1 (MQ=255)

            tccAGTACCAGAAACTCATCCGCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTTATAAc                                                                               <  2:3992090/92‑1 (MQ=255)

            gCCAGTACCAGAAACTCATCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAAc                                                                               <  2:2104562/93‑1 (MQ=255)

             ccAGTACCAGAAACTCATCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACt                                                                              >  1:3823720/1‑93 (MQ=255)

             ccAGTACCAGAAACTCATCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACt                                                                              <  1:3481108/93‑1 (MQ=255)

              cAGTACCAGAAACTCATCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTg                                                                             <  1:4353957/93‑1 (MQ=255)

              cAGTACCAGAAACTCATCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTg                                                                             >  1:3017307/1‑93 (MQ=255)

               aGTACCAGAAACTCATCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTgg                                                                            >  1:1282924/1‑93 (MQ=255)

                gTACCAGAAACTCATCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGt                                                                           >  2:4301767/1‑93 (MQ=255)

                 tACCAGAAACTCATCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTc                                                                          <  2:4758469/93‑1 (MQ=255)

                   ccAGAAACTCATCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCAc                                                                        >  2:378856/1‑93 (MQ=255)

                      gAAACTCATCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACcaa                                                                     >  1:1123336/1‑93 (MQ=255)

                       aaaCTCATCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACcaaa                                                                    <  1:3046703/93‑1 (MQ=255)

                       aaaCTCATCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACcaaa                                                                    <  2:5583597/93‑1 (MQ=255)

                       aaaCTCATCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCAAATGACGCGTCGCGTAATAACTAGTCACcaaa                                                                    >  1:264946/1‑93 (MQ=255)

                        aaCTCATCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACcaaac                                                                   >  2:3015694/1‑93 (MQ=255)

                         aCTCATCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACcaaaca                                                                  <  2:5840733/93‑1 (MQ=255)

                          cTCATCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACcaaacaa                                                                 <  2:80233/93‑1 (MQ=255)

                           tCATCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACcaaacaaa                                                                <  1:5336364/93‑1 (MQ=255)

                           tCATCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACcaaacaaa                                                                <  1:792126/93‑1 (MQ=255)

                           tCATCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACcaaacaaa                                                                <  2:5035110/93‑1 (MQ=255)

                           ccATCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACcaaacaaa                                                                <  2:6233804/92‑1 (MQ=255)

                            cATCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAAt                                                               <  2:3232134/93‑1 (MQ=255)

                            cATCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAAt                                                               >  2:3506454/1‑93 (MQ=255)

                            cATCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAAt                                                               <  2:173748/93‑1 (MQ=255)

                            cATCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAAt                                                               <  1:4107509/93‑1 (MQ=255)

                             aTCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATg                                                              <  1:5838575/93‑1 (MQ=255)

                             aTCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATg                                                              <  1:4623250/93‑1 (MQ=255)

                              tCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGc                                                             >  2:3621446/1‑93 (MQ=255)

                               cctcACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGcc                                                            <  1:960832/90‑1 (MQ=255)

                                ctcACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGccc                                                           >  1:1017862/3‑93 (MQ=255)

                                 tcACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCa                                                          >  1:4077169/2‑93 (MQ=255)

                                   aCCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATa                                                        <  2:138905/93‑1 (MQ=255)

                                   aCCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATa                                                        <  2:447930/93‑1 (MQ=255)

                                    ccTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCTAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAg                                                       >  1:5583379/1‑93 (MQ=255)

                                    ccTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAg                                                       >  1:5134179/1‑93 (MQ=255)

                                     cTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAgg                                                      <  2:5449444/93‑1 (MQ=255)

                                      tGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGc                                                     <  2:5975770/93‑1 (MQ=255)

                                      tGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGc                                                     >  2:483195/1‑93 (MQ=255)

                                      tGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGc                                                     >  2:2505366/1‑93 (MQ=255)

                                        gACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGcgt                                                   >  1:1801457/1‑93 (MQ=255)

                                         aCGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGcgtc                                                  <  1:471913/93‑1 (MQ=255)

                                         aCGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGcgtc                                                  <  1:3295492/93‑1 (MQ=255)

                                         aCGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGcgtc                                                  >  2:2819971/1‑93 (MQ=255)

                                            cgcCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGtt                                               <  1:1257013/93‑1 (MQ=255)

                                             gcCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTg                                              <  1:320894/93‑1 (MQ=255)

                                             gcCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTg                                              <  2:2327605/93‑1 (MQ=255)

                                                aaCACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGAcc                                           <  1:3265508/93‑1 (MQ=255)

                                                aaCACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGAcc                                           >  2:4985624/1‑93 (MQ=255)

                                                aaCACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGAcc                                           <  1:2297992/93‑1 (MQ=255)

                                                 actccTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCt                                          <  2:2604103/90‑1 (MQ=255)

                                                 acacCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCt                                          <  2:6094980/93‑1 (MQ=255)

                                                   acCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCttt                                        >  2:4384351/1‑93 (MQ=255)

                                                   acCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCttt                                        >  1:3999902/1‑93 (MQ=255)

                                                    ccTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCtttt                                       >  2:1518051/1‑93 (MQ=255)

                                                      tGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTg                                     <  2:1412712/93‑1 (MQ=255)

                                                      tGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTg                                     <  1:1987579/93‑1 (MQ=255)

                                                          cATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAAt                               >  2:1208145/1‑93 (MQ=255)

                                                           aTGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAAtt                              >  2:4912270/1‑93 (MQ=255)

                                                           aTGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAAtt                              <  1:5598425/93‑1 (MQ=255)

                                                           aTGTTCGAGACAGCTTAAAATAGCCAAGGACGCGTCGCGTAAGTACTGGGCACCAAACAAATGCCCATAGGCGGCGTTGACCTTTTGG‑‑AAAta                              >  1:6308988/1‑92 (MQ=255)

                                                            tGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTa                             >  1:2360720/1‑93 (MQ=255)

                                                               tCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATcc                          <  1:4348877/93‑1 (MQ=255)

                                                               tCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATcc                          <  2:6175390/93‑1 (MQ=255)

                                                                cGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCa                         <  2:5754665/93‑1 (MQ=255)

                                                                cGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCa                         <  1:1363583/93‑1 (MQ=255)

                                                                 gagaCAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCaa                        >  2:2000565/1‑93 (MQ=255)

                                                                  agaCAGCTTAAAATAGCCAATGACGCGTCGTTTAATAGCTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCaaa                       <  1:2070102/93‑1 (MQ=255)

                                                                  agaCAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCaaa                       <  2:510022/93‑1 (MQ=255)

                                                                   gaCAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAAAt                      <  2:664921/93‑1 (MQ=255)

                                                                   gaCAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAAAt                      <  1:2761119/93‑1 (MQ=255)

                                                                   gaCAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAAAt                      >  1:5371738/1‑93 (MQ=255)

                                                                      aGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAAATCaa                   <  1:298604/93‑1 (MQ=255)

                                                                      aGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAAATCaa                   >  2:3872092/1‑93 (MQ=255)

                                                                      aGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAAATCaa                   <  1:3727488/93‑1 (MQ=255)

                                                                         ttAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACTAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAAATCAAGAt                >  1:567035/1‑93 (MQ=255)

                                                                         ttAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAAATCAAGAt                >  2:4862916/1‑93 (MQ=255)

                                                                         ttAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAAATCAAGAt                <  1:495772/93‑1 (MQ=255)

                                                                          tAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAAATCAAGATa               >  2:4462539/1‑93 (MQ=255)

                                                                          tAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAAATCAAGATa               <  1:5222445/93‑1 (MQ=255)

                                                                          tAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAAATCAAGATa               <  2:5688900/93‑1 (MQ=255)

                                                                           aaaaTAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAAATCAAGATac              >  1:3165160/1‑93 (MQ=255)

                                                                           aaaaTAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAAATCAAGATac              >  2:2963594/1‑93 (MQ=255)

                                                                            aaaTAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAAATCAAGATaca             >  1:2805367/1‑93 (MQ=255)

                                                                            aaaTAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAAATCAAGATaca             <  2:5273422/93‑1 (MQ=255)

                                                                            aaaTAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAAATCAAGATaca             <  1:5723479/93‑1 (MQ=255)

                                                                            aaaTAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAAATCAAGATaca             <  1:1740176/93‑1 (MQ=255)

                                                                              aTAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAAATCAAGATAcaca           <  1:164150/93‑1 (MQ=255)

                                                                                aGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAAATCAAGATACACAAc         >  2:5780494/1‑93 (MQ=255)

                                                                                aGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAAATCAAGATACACAAc         >  1:4595576/1‑93 (MQ=255)

                                                                                 gCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAAATCAAGATACACAAcc        >  2:1811247/1‑93 (MQ=255)

                                                                                 gCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAAATCAAGATACACAAcc        >  2:3246604/1‑93 (MQ=255)

                                                                                    aaTGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAAATCAAGATACACAACCCCa     >  2:514628/1‑93 (MQ=255)

                                                                                     aTGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAAATCAAGATACACAACCCCaa    >  1:5458283/1‑93 (MQ=255)

                                                                                      tGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTGAAAAATTATCCAAATCAAGATACACAACCCCa     >  1:2057050/1‑93 (MQ=255)

                                                                                      tGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAAATCAAGATACACAACCCCAAc   <  1:4554809/93‑1 (MQ=255)

                                                                                       gACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAAATCAAGATACACAACCCCAACt  >  2:2412435/1‑93 (MQ=255)

GAGGTGTTGGATGCCAGTACCAGAAACTCATCCCCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACACGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAAATCAAGATACACAACCCCAACT  >  NC_000913/1343790‑1343969

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TGTGAGGTGTTGGATGCCAGTACCAGAAACTCATCCCCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACACGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAAATCAAGATACACAACCCCAACTTTAT  >  NC_000913/1343787‑1343973

TGTGAGGTGTTGGATGCCAGTACCAGAAACTCATCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACG                                                                                                 >  SRR4302533.6023188/1‑94 (MQ=60)

TGTGAGGTGTTGGATGCCAGTACCAGAAACTCATCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACG                                                                                                 <  SRR4302533.4795545/94‑1 (MQ=60)

 GTGAGGTGTTGGATGCCAGTACCAGAAACTCATCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGC                                                                                                >  SRR4302533.1112950/1‑94 (MQ=60)

 GTGAGGTGTTGGATGCCAGTACCAGAAACTCATCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGC                                                                                                <  SRR4302533.6196420/94‑1 (MQ=60)

  TGAGGTGTTGGATGCCAGTACCAGAACCTCATCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCG                                                                                               <  SRR4302533.5372627/94‑1 (MQ=60)

  TGAGGTGTTGGATGCCAGTACCAGAAACTCATCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCG                                                                                               <  SRR4302533.1907800/94‑1 (MQ=60)

  TGAGGTGTTGGATGCCAGTACCAGAAACTCATCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCG                                                                                               >  SRR4302533.2412170/1‑94 (MQ=60)

  TGAGGTGTTGGATGCCAGTACCAGAAACTCATCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCG                                                                                               >  SRR4302533.4615256/1‑94 (MQ=60)

  GGAGGTGTTGGATGCCAGTGCCAGAAACTCATCCTCACCTGGACGCGCCAACCCCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCG                                                                                               <  SRR4302533.1465654/94‑1 (MQ=60)

    AGGTGTTGGATGCCAGTACCAGAAACTCATCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTC                                                                                             <  SRR4302533.5243475/94‑1 (MQ=60)

    AGGTGTTGGATGCCAGTACCAGAAACTCATCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTC                                                                                             <  SRR4302533.3021526/94‑1 (MQ=60)

       TGTTGGATGCCAGTACCAGAAACTCATCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCG                                                                                          >  SRR4302533.3876186/1‑94 (MQ=60)

            GATGCCAGTACCAGAAACTCATCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATA                                                                                     <  SRR4302533.4174115/94‑1 (MQ=60)

            GATGCCAGTACCAGAAACTCATCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATA                                                                                     <  SRR4302533.818449/94‑1 (MQ=60)

            GATCCCAGTACCAGAAACTCATCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATA                                                                                     <  SRR4302533.5754607/94‑1 (MQ=60)

             ATGCCAGTACCAGAAACTCATCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAA                                                                                    <  SRR4302533.5228455/94‑1 (MQ=60)

             ATGCCAGTACCAGAAACTCATCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAA                                                                                    <  SRR4302533.3891573/94‑1 (MQ=60)

              TGCCAGTACCAGAAACTCATCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAAC                                                                                   <  SRR4302533.1094454/94‑1 (MQ=60)

              TACCAGTACCAGAAACTCATCCTCAACTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAAC                                                                                   <  SRR4302533.2356420/94‑1 (MQ=60)

               GCCAGTACCAGAAACTCATCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACT                                                                                  >  SRR4302533.3847098/1‑94 (MQ=60)

               GCCAGTACCAGAAACTCATCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACT                                                                                  <  SRR4302533.4526762/94‑1 (MQ=60)

                CCAGTACCAGAAACTCATCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTG                                                                                 <  SRR4302533.3502581/94‑1 (MQ=60)

                CCAGTACCAGAAACTCATCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTG                                                                                 >  SRR4302533.3035762/1‑94 (MQ=60)

                 CAGTACCAGAAACTCATCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGG                                                                                <  SRR4302533.4380236/94‑1 (MQ=60)

                 CAGTACCAGAAACTCATCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGG                                                                                >  SRR4302533.1290644/1‑94 (MQ=60)

                    TACCAGAAACTCATCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCA                                                                             <  SRR4302533.3830799/94‑1 (MQ=60)

                       CAGAAACTCATCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCA                                                                          >  SRR4302533.447129/1‑94 (MQ=60)

                        AGAAACTCATCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAA                                                                         >  SRR4302533.1130001/1‑94 (MQ=60)

                        AGAAACTCATCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAA                                                                         >  SRR4302533.1660228/1‑94 (MQ=60)

                        AGAAACTCATCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAA                                                                         >  SRR4302533.3955096/1‑94 (MQ=60)

                         GAAACTCATCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCAAATGACGCGTCGCGTAATAACTAGTCACCAAA                                                                        >  SRR4302533.266558/1‑94 (MQ=60)

                          AAACTCATCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAAC                                                                       <  SRR4302533.3065357/94‑1 (MQ=60)

                            ACTCATCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAA                                                                     >  SRR4302533.2076822/1‑94 (MQ=60)

                              TCATCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAAT                                                                   <  SRR4302533.5368353/94‑1 (MQ=60)

                              TCATCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAAT                                                                   <  SRR4302533.796787/94‑1 (MQ=60)

                              TCATCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAAT                                                                   <  SRR4302533.4740497/94‑1 (MQ=60)

                               CATCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGGCAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATG                                                                  <  SRR4302533.4113278/94‑1 (MQ=60)

                               CATCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATG                                                                  <  SRR4302533.4132482/94‑1 (MQ=60)

                                ATCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGC                                                                 >  SRR4302533.4028955/1‑94 (MQ=60)

                                ATCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGC                                                                 <  SRR4302533.5873875/94‑1 (MQ=60)

                                ATCCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGC                                                                 <  SRR4302533.4651274/94‑1 (MQ=60)

                                  CCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCC                                                               >  SRR4302533.1023845/1‑94 (MQ=60)

                                  CCTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCC                                                               <  SRR4302533.966478/94‑1 (MQ=60)

                                   CTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCA                                                              <  SRR4302533.5128626/94‑1 (MQ=60)

                                   CTCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCA                                                              >  SRR4302533.4101988/1‑94 (MQ=60)

                                    TCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCAT                                                             <  SRR4302533.5809493/94‑1 (MQ=60)

                                    TCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCAT                                                             <  SRR4302533.3962660/94‑1 (MQ=60)

                                     CACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATA                                                            <  SRR4302533.2953441/94‑1 (MQ=60)

                                      ACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCTAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAG                                                           >  SRR4302533.5617115/1‑94 (MQ=60)

                                      ACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAG                                                           >  SRR4302533.5165197/1‑94 (MQ=60)

                                       CCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGG                                                          >  SRR4302533.2902445/1‑94 (MQ=60)

                                        CTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGC                                                         >  SRR4302533.2701277/1‑94 (MQ=60)

                                          GGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGT                                                       >  SRR4302533.1812420/1‑94 (MQ=60)

                                          GGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGT                                                       >  SRR4302533.535470/1‑94 (MQ=60)

                                            ACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCG                                                     <  SRR4302533.3315834/94‑1 (MQ=60)

                                            ACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCG                                                     <  SRR4302533.474735/94‑1 (MQ=60)

                                              GCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTT                                                   <  SRR4302533.4375947/94‑1 (MQ=60)

                                               CGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTG                                                  <  SRR4302533.1264528/94‑1 (MQ=60)

                                                GCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGA                                                 >  SRR4302533.3250571/1‑94 (MQ=60)

                                                GCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGA                                                 <  SRR4302533.322856/94‑1 (MQ=60)

                                                 CCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGAC                                                >  SRR4302533.6090648/1‑94 (MQ=60)

                                                 CCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGAC                                                <  SRR4302533.3301975/94‑1 (MQ=60)

                                                   AACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCT                                              <  SRR4302533.2312245/94‑1 (MQ=60)

                                                   AACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCT                                              <  SRR4302533.3285659/94‑1 (MQ=60)

                                                     CACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTT                                            <  SRR4302533.304826/94‑1 (MQ=60)

                                                     CACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTT                                            >  SRR4302533.4024255/1‑94 (MQ=60)

                                                       CCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTT                                          <  SRR4302533.940255/94‑1 (MQ=60)

                                                         TGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑A                                      <  SRR4302533.1999736/94‑1 (MQ=60)

                                                          GGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AA                                     >  SRR4302533.1432538/1‑94 (MQ=60)

                                                          GGTCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AA                                     >  SRR4302533.2182048/1‑94 (MQ=60)

                                                            TCATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAAT                                   >  SRR4302533.5613600/1‑94 (MQ=60)

                                                             CATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATT                                  >  SRR4302533.76616/1‑94 (MQ=60)

                                                             CATGTTCGAGACAGCTTAAAATAGCCAAGGACGCGTCGCGTAAGTACTGGGCACCAAACAAATGCCCATAGGCGGCGTTGACCTTTTGG‑‑AAATA                                  >  SRR4302533.6346896/1‑94 (MQ=60)

                                                              ATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTA                                 <  SRR4302533.5632249/94‑1 (MQ=60)

                                                              ATGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTA                                 >  SRR4302533.2375308/1‑94 (MQ=60)

                                                               TGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTAT                                <  SRR4302533.1869583/94‑1 (MQ=60)

                                                               TGTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTAT                                <  SRR4302533.3378556/94‑1 (MQ=60)

                                                                GTTCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATC                               <  SRR4302533.624810/94‑1 (MQ=60)

                                                                  TCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCA                             <  SRR4302533.4375094/94‑1 (MQ=60)

                                                                  TCGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCA                             >  SRR4302533.5386041/1‑94 (MQ=60)

                                                                   CGAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAA                            <  SRR4302533.1371775/94‑1 (MQ=60)

                                                                    GAGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAAA                           <  SRR4302533.3288693/94‑1 (MQ=60)

                                                                     AGACAGCTTAAAATAGCCAATGACGCGTCGTTTAATAGCTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAAAT                          <  SRR4302533.2082850/94‑1 (MQ=60)

                                                                     AGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAAAT                          >  SRR4302533.1664772/1‑94 (MQ=60)

                                                                     AGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAAAT                          <  SRR4302533.549819/94‑1 (MQ=60)

                                                                     AGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAAAT                          >  SRR4302533.5404012/1‑94 (MQ=60)

                                                                     AGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAAAT                          >  SRR4302533.1281539/1‑94 (MQ=60)

                                                                     AGACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAAAT                          <  SRR4302533.1296722/94‑1 (MQ=60)

                                                                      GACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAAATC                         <  SRR4302533.2778042/94‑1 (MQ=60)

                                                                       ACAGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAAATCA                        <  SRR4302533.5637305/94‑1 (MQ=60)

                                                                         AGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAAATCAAG                      <  SRR4302533.3750353/94‑1 (MQ=60)

                                                                         AGCTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAAATCAAG                      <  SRR4302533.300430/94‑1 (MQ=60)

                                                                           CTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACTAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAAATCAAGAT                    >  SRR4302533.570392/1‑94 (MQ=60)

                                                                           CTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAAATCAAGAT                    <  SRR4302533.4873139/94‑1 (MQ=60)

                                                                           CTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAAATCAAGAT                    <  SRR4302533.3176514/94‑1 (MQ=60)

                                                                           CTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAAATCAAGAT                    <  SRR4302533.5631393/94‑1 (MQ=60)

                                                                           CTTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAAATCAAGAT                    <  SRR4302533.805878/94‑1 (MQ=60)

                                                                            TTAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAAATCAAGATA                   <  SRR4302533.498729/94‑1 (MQ=60)

                                                                             TAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AACTTATCCAAATCAAGATAC                  <  SRR4302533.4626466/94‑1 (MQ=60)

                                                                             TAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAAATCAAGATAC                  >  SRR4302533.3184638/1‑94 (MQ=60)

                                                                             TAAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAAATCAAGATAC                  <  SRR4302533.5253867/94‑1 (MQ=60)

                                                                              AAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAAATCAAGATACA                 >  SRR4302533.2822635/1‑94 (MQ=60)

                                                                              AAAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAAATCAAGATACA                 >  SRR4302533.3212446/1‑94 (MQ=60)

                                                                               AAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAAATCAAGATACAC                <  SRR4302533.5758032/94‑1 (MQ=60)

                                                                               AAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAAATCAAGATACAC                <  SRR4302533.1750728/94‑1 (MQ=60)

                                                                               AAATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAAATCAAGATACAC                <  SRR4302533.281828/94‑1 (MQ=60)

                                                                                AATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAAATCAAGATACACA               <  SRR4302533.2053030/94‑1 (MQ=60)

                                                                                AATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAAATCAAGATACACA               >  SRR4302533.5140925/1‑94 (MQ=60)

                                                                                 ATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAAATCAAGATACACAA              >  SRR4302533.5217314/1‑94 (MQ=60)

                                                                                 ATAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAAATCAAGATACACAA              <  SRR4302533.165194/94‑1 (MQ=60)

                                                                                  TAGCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAAATCAAGATACACAAC             >  SRR4302533.4623417/1‑94 (MQ=60)

                                                                                    GCCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAAATCAAGATACACAACCC           >  SRR4302533.2202530/1‑94 (MQ=60)

                                                                                     CCAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAAATCAAGATACACAACCCC          <  SRR4302533.1211929/94‑1 (MQ=60)

                                                                                      CAATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAAATCAAGATACACAACCCCA         >  SRR4302533.3706621/1‑94 (MQ=60)

                                                                                       AATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAAATCAAGATACACAACCCCAA        >  SRR4302533.5454305/1‑94 (MQ=60)

                                                                                       AATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAAATCAAGATACACAACCCCAA        >  SRR4302533.5491165/1‑94 (MQ=60)

                                                                                        ATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTGAAAAATTATCCAAATCAAGATACACAACCCCA         >  SRR4302533.2069737/1‑94 (MQ=60)

                                                                                        ATGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAAATCAAGATACACAACCCCAAC       >  SRR4302533.1781702/1‑94 (MQ=60)

                                                                                         TGACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAAATCAAGATACACAACCCCAACT      <  SRR4302533.4582434/94‑1 (MQ=60)

                                                                                           ACGCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAAATCAAGATACACAACCCCAACTTT    >  SRR4302533.1343126/1‑94 (MQ=60)

                                                                                             GCGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAAATCAAGATACACAACCCCAACTTTAT  <  SRR4302533.5959401/94‑1 (MQ=60)

TGTGAGGTGTTGGATGCCAGTACCAGAAACTCATCCCCACCTGGACGCGCCAACACCTGGTCATGTTCGAGACAGCTTAAAATAGCCAATGACACGTCGCGTAATAACTGGTCACCAAACAAATGCCCATAGGCGTCGTTGACCTTTTTG‑‑AAATTATCCAAATCAAGATACACAACCCCAACTTTAT  >  NC_000913/1343787‑1343973

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`