Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,372,616 |
T→C |
I168T (ATC→ACC) |
ycjP → |
putative transport system permease protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,372,616 | 0 | T | C | 100.0%
| 682.2
/ NA
| 215 | I168T (ATC→ACC) | ycjP | putative transport system permease protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (108/107); total (108/107) |
Only 100 of 224 total aligned reads displayed.
TTTACGACACTGAGATGGCGCTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCATCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCGTGCCGTTGGCGATGTCCG > NC_000913/1372526‑1372705
|
tttACGACACTGAGATGGCGCTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCAccc > 1:2210811/1‑93 (MQ=255)
tttACGACACTGAGATGGCGCTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCAccc < 2:405279/93‑1 (MQ=255)
cGACACTGAGATGGCGCTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGa < 2:4772497/93‑1 (MQ=255)
cGACACTGAGATGGCGCTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGa > 1:4705917/1‑93 (MQ=255)
acacTGAGATGGCGCTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCCCCCCCGATg < 1:2271012/93‑1 (MQ=255)
acacTGAGATGGCGCTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATg > 1:3943122/1‑93 (MQ=255)
acTGAGATGGCGCTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATgag > 2:3269871/1‑93 (MQ=255)
acTGAGATGGCGCTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATgag < 2:4904026/93‑1 (MQ=255)
cTGAGATGGCGCTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATgaga < 1:3708007/93‑1 (MQ=255)
tGAGATGGCGCTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGAt < 2:3538100/93‑1 (MQ=255)
gagaTGGCGCTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATc < 1:1289995/93‑1 (MQ=255)
gagaTGGCGCTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATc < 1:512095/93‑1 (MQ=255)
gagaTGGCGCTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATc < 1:5384178/93‑1 (MQ=255)
agaTGGCGCTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCg > 2:5558277/1‑93 (MQ=255)
aTGGCGCTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCgaa < 1:1914888/93‑1 (MQ=255)
aTGGCGCTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCgaa < 1:978694/93‑1 (MQ=255)
ggCGCTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCgaaga < 1:1488061/93‑1 (MQ=255)
ggCGCTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCgaaga < 2:5390037/93‑1 (MQ=255)
gcgcTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGCTGAGATCgaagaa > 2:5453786/1‑93 (MQ=255)
cgcTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGaagaag > 2:1154015/1‑93 (MQ=255)
cgcTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGaagaag > 1:4468473/1‑93 (MQ=255)
cgcTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGaagaag < 1:1726586/93‑1 (MQ=255)
gcTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAgc > 2:1564196/1‑93 (MQ=255)
gcTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAgc > 2:4509742/1‑93 (MQ=255)
gcTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAgc < 2:5075543/93‑1 (MQ=255)
cTGATCATCACCATGGTGACGCAATCTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACCCCACCCCCGATGAGATCGAAGAAgcg < 1:1524089/93‑1 (MQ=255)
cTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAgcg > 1:3315050/1‑93 (MQ=255)
cTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAgcg < 2:192338/93‑1 (MQ=255)
tGATCATCACCATGGTGACGCAACCTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAgcgg < 1:3196771/93‑1 (MQ=255)
gATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAgcggc < 2:3871407/93‑1 (MQ=255)
atcatcACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAgcggcg < 1:669972/93‑1 (MQ=255)
atcatcACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAgcggcg > 1:4403903/1‑93 (MQ=255)
tcatcaCCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCga > 1:2991899/1‑93 (MQ=255)
catcaCCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCgat > 1:1101212/1‑93 (MQ=255)
tcaCCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCgatga > 2:3794834/1‑93 (MQ=255)
tcaCCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCgatga > 2:5286301/1‑93 (MQ=255)
tcaCCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCgatga < 1:5818154/93‑1 (MQ=255)
caCCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCgatgat > 2:5610179/1‑93 (MQ=255)
aCCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGatgatg > 1:1150032/1‑93 (MQ=255)
ccATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATgatgg > 1:4646557/1‑93 (MQ=255)
ccATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATgatgg < 1:101035/93‑1 (MQ=255)
cATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATgatgga < 2:464661/93‑1 (MQ=255)
cATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATgatgga > 1:4282932/1‑93 (MQ=255)
cATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATgatgga < 1:4526903/93‑1 (MQ=255)
tGGTGTCGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATgatggatg > 2:3991393/1‑93 (MQ=255)
tGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATgatggatg < 1:3663611/93‑1 (MQ=255)
gACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCt < 2:3634116/93‑1 (MQ=255)
cAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAAc > 1:4519293/1‑93 (MQ=255)
cAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACAACACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGCCCTCAAc > 2:4095951/1‑93 (MQ=255)
aaaCTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAAcc > 2:5312307/1‑93 (MQ=255)
aaaCTCTGCCCACCGCAGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAAcc < 1:831467/93‑1 (MQ=255)
aaCTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCg > 2:1939831/1‑93 (MQ=255)
aCTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGt > 1:4152775/1‑93 (MQ=255)
ctctGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTc < 1:946335/93‑1 (MQ=255)
ccACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCaaa > 2:6108273/1‑93 (MQ=255)
ccACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCaaa > 2:1300756/1‑93 (MQ=255)
ccccccgTGTTTATGCTGAAAAGCTACTTCGGCCCCCCCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAAtt < 1:1388144/89‑1 (MQ=255)
cgcctTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTAt < 2:4547498/93‑1 (MQ=255)
gccgTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATc > 2:2249273/1‑93 (MQ=255)
cgTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCtt < 2:4854521/93‑1 (MQ=255)
gtgtTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGGGATGATGGATGGCCTCAACCGTCGGCAAATTATCTTc > 2:280789/1‑93 (MQ=255)
gtgtTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTc < 1:1595054/93‑1 (MQ=255)
gtgtTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTc < 2:6184139/93‑1 (MQ=255)
gtgtTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTc > 2:2631041/1‑93 (MQ=255)
gtgtTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTc < 2:2971975/93‑1 (MQ=255)
gtgtTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTc < 2:2449231/93‑1 (MQ=255)
tgtTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTcc > 1:4935603/1‑93 (MQ=255)
tgtTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTcc > 2:4188253/1‑93 (MQ=255)
gtTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCg > 2:3047140/1‑93 (MQ=255)
gtTTATGCTGAAAAGCTACTGCGACACCTCCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCg < 2:1468813/93‑1 (MQ=255)
tttATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGc < 1:5479089/93‑1 (MQ=255)
tttATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGc < 1:275949/93‑1 (MQ=255)
ttATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCa > 1:6179868/1‑93 (MQ=255)
tATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCAt > 2:4831526/1‑93 (MQ=255)
tATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCAt > 2:5843872/1‑93 (MQ=255)
aTGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATc > 2:6060030/1‑93 (MQ=255)
cTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCAcc < 2:1276401/93‑1 (MQ=255)
tGAAAATCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCg < 2:1783799/93‑1 (MQ=255)
tGAAAAGCTACTTCGACACCACCCTCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCg < 1:2604817/93‑1 (MQ=255)
tGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCg < 2:712861/93‑1 (MQ=255)
tGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCg > 2:4943285/1‑93 (MQ=255)
gAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCGt > 1:521946/1‑93 (MQ=255)
gAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCGt > 1:2951897/1‑93 (MQ=255)
gAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCGt < 1:5586522/93‑1 (MQ=255)
aggCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCGCGcc < 2:832013/91‑1 (MQ=255)
aaGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCGTGcc > 1:572604/1‑93 (MQ=255)
aGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCGTGCCg > 1:3462029/1‑93 (MQ=255)
gCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCGTGCCGt < 2:5490749/93‑1 (MQ=255)
gCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCGTGCCGt > 1:2463410/1‑93 (MQ=255)
cTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCGTGCCGtt < 2:5218817/93‑1 (MQ=255)
cTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCGTCCGCATCACCGTGCCGtt < 2:6132831/93‑1 (MQ=255)
tACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCGTGCCGTTg < 2:5236179/93‑1 (MQ=255)
aCTTCGACACCGCCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCGTGCCGTTgg < 1:2113175/93‑1 (MQ=255)
cTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCGTGCCGTTGGc > 2:4980889/1‑93 (MQ=255)
ttCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCGTGCCGTTGGCg > 2:3409799/1‑93 (MQ=255)
tCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCGTGCCGTTGGCGa < 1:3050153/93‑1 (MQ=255)
tCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCGTGCCGTTGGCGa < 1:1951547/93‑1 (MQ=255)
caccacCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCAACGTGACGTTGGCGATGTc > 1:6189762/1‑93 (MQ=255)
ccACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCGTGCCGTTGGCGATGTCCg > 2:5332347/1‑93 (MQ=255)
ccACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCGTGCCGTTGGCGATGTCCg < 1:6218400/93‑1 (MQ=255)
|
TTTACGACACTGAGATGGCGCTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCATCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCGTGCCGTTGGCGATGTCCG > NC_000913/1372526‑1372705
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATTTACGACACTGAGATGGCGCTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCATCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCGTGCCGTTGGCGATGTCCGGGCT > NC_000913/1372525‑1372709
|
ATTTACGACACTGAGATGGCGCTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCC > SRR4302533.2224445/1‑94 (MQ=60)
TACGACACTGAGATGGCGCTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCG > SRR4302533.2847294/1‑94 (MQ=60)
ACGACACTGAGATGGCGCTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGA > SRR4302533.4734436/1‑94 (MQ=60)
CGACACTGAGATGGCGCTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGAT > SRR4302533.1490320/1‑94 (MQ=60)
GACACTGAGATGGCGCTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATG > SRR4302533.3967178/1‑94 (MQ=60)
ACACTGAGATGGCGCTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCCCCCCCGATGA < SRR4302533.2285064/94‑1 (MQ=60)
CACTGAGATGGCGCTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAG > SRR4302533.1076587/1‑94 (MQ=60)
ACTGAGATGGCGCTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGA > SRR4302533.1441727/1‑94 (MQ=60)
CTGAGATGGCGCTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTTAAAAGCTACTTCGACACCACCCCCGATGAGAT < SRR4302533.5478501/94‑1 (MQ=60)
CTGAGATGGCGCTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGAT < SRR4302533.3730781/94‑1 (MQ=60)
GAGATGGCGCTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCG < SRR4302533.1297760/94‑1 (MQ=60)
GAGATGGCGCTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCG < SRR4302533.5416525/94‑1 (MQ=60)
GAGATGGCGCTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCG < SRR4302533.515138/94‑1 (MQ=60)
AGATGGCGCTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGA > SRR4302533.449855/1‑94 (MQ=60)
ATGGCGCTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAG < SRR4302533.4262523/94‑1 (MQ=60)
ATGGCGCTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAG < SRR4302533.984433/94‑1 (MQ=60)
ATGGCGCTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAG < SRR4302533.1926576/94‑1 (MQ=60)
GGCGCTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAA < SRR4302533.1497038/94‑1 (MQ=60)
GCGCTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAG > SRR4302533.2253141/1‑94 (MQ=60)
GCGCTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAG > SRR4302533.4495500/1‑94 (MQ=60)
CGCTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGC < SRR4302533.1737061/94‑1 (MQ=60)
GCTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCG > SRR4302533.3335516/1‑94 (MQ=60)
CTGATCATCACCATGGTGACGCAATCTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACCCCACCCCCGATGAGATCGAAGAAGCGG < SRR4302533.1533265/94‑1 (MQ=60)
CTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGG > SRR4302533.4683603/1‑94 (MQ=60)
CTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGG < SRR4302533.1621112/94‑1 (MQ=60)
CTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGG > SRR4302533.4485153/1‑94 (MQ=60)
TGATCATCACCATGGTGACGCAACCTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGC < SRR4302533.3216442/94‑1 (MQ=60)
GATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCG > SRR4302533.4430492/1‑94 (MQ=60)
ATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGA > SRR4302533.6171176/1‑94 (MQ=60)
ATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGA < SRR4302533.673931/94‑1 (MQ=60)
ATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGA > SRR4302533.3010194/1‑94 (MQ=60)
tcatcccaaggggtacccacACTCTGACCACCGCCGTGTTGATGCTGAAAAGCTACTTCGACACCTCCCCCGATGAGATCGAAGAAGCGGCGAT < SRR4302533.1756788/74‑1 (MQ=60)
TCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGAT > SRR4302533.1107739/1‑94 (MQ=60)
ATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGA > SRR4302533.300861/1‑94 (MQ=60)
TCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGAT < SRR4302533.5853301/94‑1 (MQ=60)
CACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATG > SRR4302533.1156900/1‑94 (MQ=60)
CACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATG < SRR4302533.4789394/94‑1 (MQ=60)
ACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGG < SRR4302533.5633096/94‑1 (MQ=60)
ACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGG > SRR4302533.4674715/1‑94 (MQ=60)
CCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGA > SRR4302533.4308672/1‑94 (MQ=60)
CCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGA < SRR4302533.4038003/94‑1 (MQ=60)
CCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGA < SRR4302533.101663/94‑1 (MQ=60)
CATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGAT < SRR4302533.4554313/94‑1 (MQ=60)
CATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGAT < SRR4302533.703814/94‑1 (MQ=60)
ATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATG < SRR4302533.1129998/94‑1 (MQ=60)
ATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATG > SRR4302533.6228366/1‑94 (MQ=60)
ATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATG > SRR4302533.3782461/1‑94 (MQ=60)
AGGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAGAAGCTACTTCGACACCACACCCGATGAGATCGAAGAAGCGGCGATGATGGATG < SRR4302533.4541699/94‑1 (MQ=60)
TGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGG < SRR4302533.454787/94‑1 (MQ=60)
TGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGG < SRR4302533.3686132/94‑1 (MQ=60)
ACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCA < SRR4302533.6112765/94‑1 (MQ=60)
CGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAA > SRR4302533.3578530/1‑94 (MQ=60)
GCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAAC > SRR4302533.3054175/1‑94 (MQ=60)
GCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAAC > SRR4302533.4546662/1‑94 (MQ=60)
CAAATTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACC < SRR4302533.3250469/94‑1 (MQ=60)
CAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACC > SRR4302533.5329710/1‑94 (MQ=60)
AAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCG < SRR4302533.4558315/94‑1 (MQ=60)
AAACTCTGCCCACCGCAGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCG < SRR4302533.836341/94‑1 (MQ=60)
AACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGT > SRR4302533.4177938/1‑94 (MQ=60)
CTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCT > SRR4302533.3700571/1‑94 (MQ=60)
CTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCT < SRR4302533.951899/94‑1 (MQ=60)
CTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCT < SRR4302533.4852484/94‑1 (MQ=60)
CTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGC > SRR4302533.3334641/1‑94 (MQ=60)
TGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATTGCCTCAACCGTCTGCA > SRR4302533.1371059/1‑94 (MQ=60)
ccccCCGTGTTTATGCTGAAAAGCTACTTCGGCCCCCCCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTA < SRR4302533.1396502/90‑1 (MQ=60)
CGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATC < SRR4302533.4368944/94‑1 (MQ=60)
CGCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATC < SRR4302533.1005047/94‑1 (MQ=60)
GCCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCT > SRR4302533.30967/1‑94 (MQ=60)
CCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTT > SRR4302533.2690862/1‑94 (MQ=60)
CCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTT > SRR4302533.3424208/1‑94 (MQ=60)
CCGTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTC > SRR4302533.1890684/1‑94 (MQ=60)
GTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCC > SRR4302533.2914687/1‑94 (MQ=60)
GTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCC > SRR4302533.4965490/1‑94 (MQ=60)
GTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCC < SRR4302533.1604707/94‑1 (MQ=60)
GTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCC < SRR4302533.1190164/94‑1 (MQ=60)
GTGTTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGACTCAACCGTCTGCAAATTATCTTCC > SRR4302533.5536487/1‑94 (MQ=60)
TTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCA < SRR4302533.5512119/94‑1 (MQ=60)
TTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCA < SRR4302533.277628/94‑1 (MQ=60)
TTTATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCA > SRR4302533.6216983/1‑94 (MQ=60)
TATGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATC > SRR4302533.97124/1‑94 (MQ=60)
TGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCAC < SRR4302533.2226634/94‑1 (MQ=60)
TGCTGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCAC > SRR4302533.2021633/1‑94 (MQ=60)
TGAAAAGCTACTTCGACACCACCCTCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCGT < SRR4302533.2620819/94‑1 (MQ=60)
TGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCGT > SRR4302533.523202/1‑94 (MQ=60)
TGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCGT > SRR4302533.525042/1‑94 (MQ=60)
TGAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCGT > SRR4302533.2969949/1‑94 (MQ=60)
GAAAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCGTG < SRR4302533.5620277/94‑1 (MQ=60)
AAAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCGTGCC > SRR4302533.575983/1‑94 (MQ=60)
AAGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCGTGCCG > SRR4302533.3483399/1‑94 (MQ=60)
AGCTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCGTGCCGT > SRR4302533.2478606/1‑94 (MQ=60)
CTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCGTGCCGTTG < SRR4302533.2295778/94‑1 (MQ=60)
CTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCGTGCCGTTG > SRR4302533.5802069/1‑94 (MQ=60)
CTACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCGTGCCGTTG < SRR4302533.4971506/94‑1 (MQ=60)
TACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCGTGCCGTTGG > SRR4302533.1837230/1‑94 (MQ=60)
TCTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCGTGCCGTTGGC < SRR4302533.2189998/94‑1 (MQ=60)
ACTTCGACACCGCCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCGTGCCGTTGGC < SRR4302533.2126209/94‑1 (MQ=60)
ACTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCGTGCCGTTGGC > SRR4302533.6217790/1‑94 (MQ=60)
CTTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCGTGCCGTTGGCG > SRR4302533.6260606/1‑94 (MQ=60)
TTCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCGTGCCGTTGGCGA > SRR4302533.2607984/1‑94 (MQ=60)
TCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCGTGCCGTTGGCGAT < SRR4302533.1937833/94‑1 (MQ=60)
TCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCGTGCCGTTGGCGAT < SRR4302533.1963441/94‑1 (MQ=60)
TCGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCGTGCCGTTGGCGAT < SRR4302533.3068822/94‑1 (MQ=60)
CGACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCGTGCCGTTGGCGATG < SRR4302533.5441439/94‑1 (MQ=60)
GACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCGTGCCGTTGGCGATGT < SRR4302533.817633/94‑1 (MQ=60)
ACACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCAACGTGACGTTGGCGATGTC > SRR4302533.6226907/1‑94 (MQ=60)
ACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCGTGCCGTTGGCGATGTCCG < SRR4302533.3908771/94‑1 (MQ=60)
ACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCGTGCCGTTGGCGATGTCCG > SRR4302533.922920/1‑94 (MQ=60)
ACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCGTGCCGTTGGCGATGTCCG > SRR4302533.154640/1‑94 (MQ=60)
ACCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCGTGCCGTTGGCGATGTCCG > SRR4302533.1519281/1‑94 (MQ=60)
CCACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCGTGCCGTTGGCGATGTCCGG < SRR4302533.6255685/94‑1 (MQ=60)
CACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCGTGCCGTTGGCGATGTCCGGG > SRR4302533.4399692/1‑94 (MQ=60)
CACCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCGTGCCGTTGGCGATGTCCGGG < SRR4302533.2878557/94‑1 (MQ=60)
CCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCGTGCCGTTGGCGATGTGCGGGCT > SRR4302533.5375815/1‑94 (MQ=60)
CCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCGTGCCGTTGGCGATGTCCGGGCT > SRR4302533.5125515/1‑94 (MQ=60)
|
ATTTACGACACTGAGATGGCGCTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCATCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCGTGCCGTTGGCGATGTCCGGGCT > NC_000913/1372525‑1372709
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
