Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,439,984	T→C	H295R (CAC→CGC)	ldhA ←	fermentative D‑lactate dehydrogenase, NAD‑dependent

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,439,984	0	T	C	100.0%	838.8 / NA	256	H295R (CAC→CGC)	ldhA	fermentative D‑lactate dehydrogenase, NAD‑dependent
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (121/135); total (121/135)

Only 100 of 263 total aligned reads displayed.

GGCAGGTTTCGCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGTGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCGTTGGATTTATCTTCAAAGAATAGA  >  NC_000913/1439895‑1440073

ggCAGGTTTCGCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGcc                                                                                        <  1:6299385/93‑1 (MQ=255)

ggCAGGTTTCGCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGcc                                                                                        >  1:792239/1‑93 (MQ=255)

 gCAGGTTTCGCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGccc                                                                                       >  1:3200947/1‑93 (MQ=255)

 gCAGGTTTCGCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGccc                                                                                       >  1:457318/1‑93 (MQ=255)

 gCAGGTTTCGCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGccc                                                                                       >  2:3553110/1‑93 (MQ=255)

  cAGGTTTCGCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATTCTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCg                                                                                      <  2:5719477/93‑1 (MQ=255)

   aGGTTTCGCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCgg                                                                                     >  2:2123534/1‑93 (MQ=255)

    ggTTTCGCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAACTTCTGCTGTCAGGAATGCCTGGCGCCCGGt                                                                                    >  2:3442622/1‑93 (MQ=255)

     gTTTCGCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTa                                                                                   <  2:3337201/93‑1 (MQ=255)

      tttCGCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTaa                                                                                  >  2:4495962/1‑93 (MQ=255)

       ttCGCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTaaa                                                                                 <  1:3402261/93‑1 (MQ=255)

        tCGCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAAc                                                                                <  1:4299880/93‑1 (MQ=255)

         cGCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACa                                                                               <  1:588565/93‑1 (MQ=255)

         cGCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACa                                                                               <  2:5999041/93‑1 (MQ=255)

          gCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAg                                                                              >  2:3721397/1‑93 (MQ=255)

          gCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAg                                                                              >  2:1805510/1‑93 (MQ=255)

           ccTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGc                                                                             >  1:2339278/1‑93 (MQ=255)

            cTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCa                                                                            >  1:1088525/1‑93 (MQ=255)

             tttttCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCAc                                                                           >  1:4073347/1‑93 (MQ=255)

             tttttCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCAc                                                                           >  1:4492127/1‑93 (MQ=255)

             tttttCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCAc                                                                           <  1:2043745/93‑1 (MQ=255)

                 tCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTtg                                                                       >  2:5883903/1‑93 (MQ=255)

                  ccAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTtgt                                                                      >  1:925165/1‑93 (MQ=255)

                  ccAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTtgt                                                                      >  1:1860712/1‑93 (MQ=255)

                   cAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCCGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTtgtg                                                                     <  2:4544331/93‑1 (MQ=255)

                    aGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTgg                                                                    <  2:4658364/93‑1 (MQ=255)

                    aGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTgg                                                                    <  2:2426828/93‑1 (MQ=255)

                     gATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGGCCGGTAAACAGCACGTTGTggc                                                                   >  2:5563131/1‑93 (MQ=255)

                     gATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTggc                                                                   >  1:2501993/1‑93 (MQ=255)

                     gATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTggc                                                                   >  1:3282964/1‑93 (MQ=255)

                     gATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTggc                                                                   <  1:2896360/93‑1 (MQ=255)

                     gATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTggc                                                                   >  1:5560290/1‑93 (MQ=255)

                     gATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTCCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTggc                                                                   >  2:5378184/1‑93 (MQ=255)

                     gATTGCTTAAGTTTTGCAGCGCAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAAAGCCTGGCGCCCGGTAAACAGCACGTTGTggc                                                                   >  2:1834412/1‑93 (MQ=255)

                      aTTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTggca                                                                  >  1:470840/1‑93 (MQ=255)

                       ttGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTggcag                                                                 >  1:4091419/1‑93 (MQ=255)

                         gCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAGACAGCACGTTGTggcaggc                                                               <  2:6145919/93‑1 (MQ=255)

                          cTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTggcaggga                                                              >  2:2287710/1‑91 (MQ=255)

                           ttAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGgcaggcag                                                             <  2:5231103/93‑1 (MQ=255)

                            tAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGa                                                            >  2:3714194/1‑93 (MQ=255)

                             aaGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGAc                                                           <  2:6289179/93‑1 (MQ=255)

                               gTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAg                                                         >  2:3032339/1‑93 (MQ=255)

                                ttttGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAgg                                                        <  1:1142807/93‑1 (MQ=255)

                                ttttGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAgg                                                        <  1:3049069/93‑1 (MQ=255)

                                   tGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGa                                                     <  1:3819736/93‑1 (MQ=255)

                                    gCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGAc                                                    <  2:4265449/93‑1 (MQ=255)

                                      aGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGGAGACAGGCGACgg                                                  >  1:5051191/1‑93 (MQ=255)

                                      aGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACgg                                                  >  2:2738607/1‑93 (MQ=255)

                                       gCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGa                                                 >  2:1309291/1‑93 (MQ=255)

                                        cGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGaa                                                >  2:5508275/1‑93 (MQ=255)

                                          tAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCCGACAGGCGGCGGAATa                                              >  2:1596693/1‑93 (MQ=255)

                                           aGTCTGAGAAGTACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATAc                                             <  1:1477775/93‑1 (MQ=255)

                                           aGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATAc                                             <  1:3671829/93‑1 (MQ=255)

                                           aGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATAc                                             <  1:1377569/93‑1 (MQ=255)

                                              cTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTc                                          <  1:6220895/93‑1 (MQ=255)

                                               tGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGGATACGTCa                                         >  1:156533/1‑93 (MQ=255)

                                               tGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCa                                         >  2:1427489/1‑93 (MQ=255)

                                               tGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCa                                         <  2:1497490/93‑1 (MQ=255)

                                               tGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCa                                         >  2:2399014/1‑93 (MQ=255)

                                                gagaAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGCATACGTCAt                                        >  2:81259/1‑93 (MQ=255)

                                                 agaAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATc                                       <  2:3971132/93‑1 (MQ=255)

                                                   aaaTACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCt                                     <  1:5805576/93‑1 (MQ=255)

                                                    aaTACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTg                                    <  2:4460034/93‑1 (MQ=255)

                                                    aaTACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTg                                    >  2:3470139/1‑93 (MQ=255)

                                                     aTACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTgg                                   <  2:1946783/93‑1 (MQ=255)

                                                      tACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGa                                  <  2:5575501/93‑1 (MQ=255)

                                                      tACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGa                                  >  1:5817547/1‑93 (MQ=255)

                                                      tACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGa                                  >  1:1642996/1‑93 (MQ=255)

                                                       aCTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGGCGACAGGCGACGGAATACGTCATCCTGGAt                                 >  1:2609214/1‑93 (MQ=255)

                                                         tGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCa                               <  1:2445084/93‑1 (MQ=255)

                                                         tGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCa                               <  2:2817653/93‑1 (MQ=255)

                                                          ggTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCAc                              <  2:4131242/93‑1 (MQ=255)

                                                            tCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCGTCCTGGATCAcgt                            >  1:3604858/1‑93 (MQ=255)

                                                            tCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCAcgc                            >  2:877705/1‑92 (MQ=255)

                                                            tCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCAcct                            >  2:3842791/1‑91 (MQ=255)

                                                            gcAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCAcgt                            <  1:5109997/92‑1 (MQ=255)

                                                             cAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGGAGACAGGCGACGGAATAAGTCATCCTGGATCAcgtc                           >  1:5283717/1‑93 (MQ=255)

                                                              agagCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCAcgtcg                          >  2:931927/1‑93 (MQ=255)

                                                               gagCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGGAGACAGGCGACGGAATACGACATCCTGGATCAcgccgt                         >  2:5816574/1‑93 (MQ=255)

                                                                agCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGTTATGCAAACAGAAGACGGCATACGTCATCCTGGATCACGTCGtt                        <  1:1057771/93‑1 (MQ=255)

                                                                 gCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGGATACGTCATCCTGGATCACGGCGTTg                       >  2:1146042/1‑93 (MQ=255)

                                                                 gCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCGTTg                       <  1:5637239/93‑1 (MQ=255)

                                                                 gCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATACTGGATCACGTCGTTg                       >  1:1819913/1‑93 (MQ=255)

                                                                      tgctgTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTTGTTGGGttt                  >  1:950466/1‑93 (MQ=255)

                                                                        ctgTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCGTTGGATTTAt                <  1:3230676/93‑1 (MQ=255)

                                                                          gTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCGTTGGATTTATCt              >  1:4334058/1‑93 (MQ=255)

                                                                            cAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCGTTGGATTTATCTTc            <  1:1697443/93‑1 (MQ=255)

                                                                            cAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCGTTGGATTTATCTTc            <  1:3903530/93‑1 (MQ=255)

                                                                            cAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCGTTGGATTTATCTTc            <  1:5204711/93‑1 (MQ=255)

                                                                              ggAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCGTTGGATTTATCTTCaa          <  1:3716361/93‑1 (MQ=255)

                                                                              ggAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCGTTGGATTTATCTTCaa          <  1:5870563/93‑1 (MQ=255)

                                                                              ggAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCGTTGGATTTATCTTCaa          <  2:2946808/93‑1 (MQ=255)

                                                                               gAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCGTTGGATTTATCTTTaaa         >  2:1109455/1‑93 (MQ=255)

                                                                                aaTGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCGTTGGATTTATCTTCAAAg        <  1:4774537/93‑1 (MQ=255)

                                                                                 aagCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGAAAGGCGACGGAATACGGCATCCTGGATCACGTCGTTGGATTTATCTTCcaaaa       >  2:3295897/3‑91 (MQ=255)

                                                                                 aTGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCGTTGGATTTATCTTCAAAGa       >  1:5467200/1‑93 (MQ=255)

                                                                                    ccTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCGTTGGATTTATCTTCAAAGAATa    <  2:4963558/93‑1 (MQ=255)

                                                                                     cTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCGTTGGATTTATCTTCAAAGAATAg   >  1:4986440/1‑93 (MQ=255)

                                                                                     cTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCGTTGGATTTATCTTCAAAGAATAg   >  1:2013154/1‑93 (MQ=255)

                                                                                      tGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCGTTGGATTTATCTTCAAAGAATAGa  <  2:1002844/93‑1 (MQ=255)

GGCAGGTTTCGCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGTGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCGTTGGATTTATCTTCAAAGAATAGA  >  NC_000913/1439895‑1440073

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TTCGGGCAGGTTTCGCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGTGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCGTTGGATTTATCTTCAAAGAATAGATCGC  >  NC_000913/1439891‑1440077

TTCGGGCAGGTTTCGCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGC                                                                                               >  SRR4302533.2725999/1‑94 (MQ=60)

TTCGGGCAGGTTTCGCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGC                                                                                               <  SRR4302533.4915520/94‑1 (MQ=60)

   GGGCAGGTTTCGCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCC                                                                                            >  SRR4302533.796901/1‑94 (MQ=60)

    GGCAGGTTTCGCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCC                                                                                           <  SRR4302533.6336995/94‑1 (MQ=60)

    GGCAGGTTTCGCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCC                                                                                           >  SRR4302533.460054/1‑94 (MQ=60)

    GGCAGGTTTCGCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCC                                                                                           >  SRR4302533.3220643/1‑94 (MQ=60)

         GTTTCGCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAA                                                                                      >  SRR4302533.3498720/1‑94 (MQ=60)

          TTTCGCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAA                                                                                     >  SRR4302533.4801234/1‑94 (MQ=60)

           TTCGCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAAC                                                                                    >  SRR4302533.1125824/1‑94 (MQ=60)

           TTCGCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAAC                                                                                    <  SRR4302533.3423269/94‑1 (MQ=60)

            TCGCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACA                                                                                   >  SRR4302533.1748748/1‑94 (MQ=60)

            TCGCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACA                                                                                   <  SRR4302533.4325739/94‑1 (MQ=60)

             CGCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAG                                                                                  <  SRR4302533.1775175/94‑1 (MQ=60)

             CGCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAG                                                                                  >  SRR4302533.3649002/1‑94 (MQ=60)

             CGCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAG                                                                                  >  SRR4302533.5795572/1‑94 (MQ=60)

             CGCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAG                                                                                  <  SRR4302533.592041/94‑1 (MQ=60)

             CGCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAG                                                                                  >  SRR4302533.918264/1‑94 (MQ=60)

             CGCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAG                                                                                  <  SRR4302533.4383608/94‑1 (MQ=60)

              GCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGC                                                                                 >  SRR4302533.2353762/1‑94 (MQ=60)

              GCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGC                                                                                 >  SRR4302533.4983685/1‑94 (MQ=60)

               CCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCA                                                                                >  SRR4302533.4150903/1‑94 (MQ=60)

               CCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCA                                                                                <  SRR4302533.2526186/94‑1 (MQ=60)

               CCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCA                                                                                >  SRR4302533.991310/1‑94 (MQ=60)

               CCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCA                                                                                >  SRR4302533.1094936/1‑94 (MQ=60)

                CTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCGGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCAC                                                                               >  SRR4302533.244407/1‑94 (MQ=60)

                CTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCAC                                                                               >  SRR4302533.4098144/1‑94 (MQ=60)

                CTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCAC                                                                               >  SRR4302533.5885497/1‑94 (MQ=60)

                CTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCAC                                                                               >  SRR4302533.4519329/1‑94 (MQ=60)

                 TTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACG                                                                              >  SRR4302533.1929926/1‑94 (MQ=60)

                 TTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACG                                                                              >  SRR4302533.3698498/1‑94 (MQ=60)

                 TTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACG                                                                              <  SRR4302533.1645832/94‑1 (MQ=60)

                 TTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACG                                                                              <  SRR4302533.2056344/94‑1 (MQ=60)

                   TTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTT                                                                            <  SRR4302533.6179285/94‑1 (MQ=60)

                    TTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTG                                                                           <  SRR4302533.2452765/94‑1 (MQ=60)

                     TCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGT                                                                          >  SRR4302533.1872059/1‑94 (MQ=60)

                     TCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGT                                                                          >  SRR4302533.6284298/1‑94 (MQ=60)

                     TCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGT                                                                          >  SRR4302533.930598/1‑94 (MQ=60)

                      CCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTG                                                                         <  SRR4302533.3873973/94‑1 (MQ=60)

                        AGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGC                                                                       >  SRR4302533.3303230/1‑94 (MQ=60)

                        AGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGC                                                                       >  SRR4302533.2517425/1‑94 (MQ=60)

                        AGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGC                                                                       >  SRR4302533.5593894/1‑94 (MQ=60)

                        AGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGC                                                                       <  SRR4302533.5455557/94‑1 (MQ=60)

                         GATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCA                                                                      >  SRR4302533.473656/1‑94 (MQ=60)

                         GATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCA                                                                      <  SRR4302533.2914169/94‑1 (MQ=60)

                         GATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCA                                                                      <  SRR4302533.3039011/94‑1 (MQ=60)

                         GATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCA                                                                      <  SRR4302533.5580915/94‑1 (MQ=60)

                          ATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAG                                                                     <  SRR4302533.3380647/94‑1 (MQ=60)

                          ATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAG                                                                     >  SRR4302533.4116324/1‑94 (MQ=60)

                             GCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCA                                                                  <  SRR4302533.5258244/94‑1 (MQ=60)

                              CTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAG                                                                 <  SRR4302533.4104461/94‑1 (MQ=60)

                                 AAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACA                                                              <  SRR4302533.2474830/94‑1 (MQ=60)

                                 AAGTGTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACA                                                              <  SRR4302533.1467202/94‑1 (MQ=60)

                                  AGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGTGTCCGGTAAACAGCACGGTGTGGCAGGCAGACAG                                                             >  SRR4302533.5249052/1‑94 (MQ=60)

                                    TTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGC                                                           <  SRR4302533.3067733/94‑1 (MQ=60)

                                    TTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGC                                                           <  SRR4302533.1149620/94‑1 (MQ=60)

                                    TTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGC                                                           >  SRR4302533.2028430/1‑94 (MQ=60)

                                     TTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCG                                                          <  SRR4302533.1410741/94‑1 (MQ=60)

                                       TGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGAC                                                        <  SRR4302533.3843094/94‑1 (MQ=60)

                                        GCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACG                                                       <  SRR4302533.5097788/94‑1 (MQ=60)

                                         CAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGGAGACAGGCGACGG                                                      >  SRR4302533.5081737/1‑94 (MQ=60)

                                            CGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAAT                                                   >  SRR4302533.4743394/1‑94 (MQ=60)

                                             GTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATA                                                  <  SRR4302533.1863450/94‑1 (MQ=60)

                                              TAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATAC                                                 <  SRR4302533.3946424/94‑1 (MQ=60)

                                              TAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATAC                                                 >  SRR4302533.386647/1‑94 (MQ=60)

                                               AGTCTGAGAAGTACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACG                                                <  SRR4302533.1486704/94‑1 (MQ=60)

                                               AGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACG                                                <  SRR4302533.3694397/94‑1 (MQ=60)

                                               AGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACG                                                <  SRR4302533.1385855/94‑1 (MQ=60)

                                               AGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACG                                                <  SRR4302533.4331195/94‑1 (MQ=60)

                                                GTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGT                                               >  SRR4302533.5135377/1‑94 (MQ=60)

                                                 TCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTC                                              <  SRR4302533.6320143/94‑1 (MQ=60)

                                                 TCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTC                                              <  SRR4302533.5011676/94‑1 (MQ=60)

                                                 TCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATAAGTC                                              >  SRR4302533.667987/1‑94 (MQ=60)

                                                  CTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGGATACGTCA                                             >  SRR4302533.157530/1‑94 (MQ=60)

                                                  CTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCA                                             >  SRR4302533.2527071/1‑94 (MQ=60)

                                                  CTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCA                                             <  SRR4302533.6258186/94‑1 (MQ=60)

                                                   TGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCAT                                            <  SRR4302533.3287371/94‑1 (MQ=60)

                                                   TGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCAT                                            <  SRR4302533.4554319/94‑1 (MQ=60)

                                                     AGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCC                                          <  SRR4302533.939168/94‑1 (MQ=60)

                                                      GAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCT                                         >  SRR4302533.4153758/1‑94 (MQ=60)

                                                      GAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCT                                         <  SRR4302533.578684/94‑1 (MQ=60)

                                                      GAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCT                                         >  SRR4302533.2321964/1‑94 (MQ=60)

                                                       AAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTTATCCTG                                        >  SRR4302533.4523116/1‑94 (MQ=60)

                                                       AAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTG                                        <  SRR4302533.5840633/94‑1 (MQ=60)

                                                        AATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGG                                       <  SRR4302533.1337017/94‑1 (MQ=60)

                                                         ATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGA                                      >  SRR4302533.5852690/1‑94 (MQ=60)

                                                         ATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGA                                      >  SRR4302533.1652944/1‑94 (MQ=60)

                                                         ATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGA                                      <  SRR4302533.3631407/94‑1 (MQ=60)

                                                          TACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGGCGACAGGCGACGGAATACGTCATCCTGGAT                                     >  SRR4302533.2625234/1‑94 (MQ=60)

                                                          TACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGAGACGGAATACGTCATCCTGGAT                                     >  SRR4302533.5634397/1‑94 (MQ=60)

                                                            CTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCA                                   >  SRR4302533.1683064/1‑94 (MQ=60)

                                                             TGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCAC                                  <  SRR4302533.2460178/94‑1 (MQ=60)

                                                             TGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCAC                                  <  SRR4302533.6137828/94‑1 (MQ=60)

                                                              GGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACG                                 >  SRR4302533.3379764/1‑94 (MQ=60)

                                                              GGTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAAGCGACGGAATACGTCATCCTGGATCACG                                 >  SRR4302533.3722137/1‑94 (MQ=60)

                                                               GTCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCGTCCTGGATCACGT                                >  SRR4302533.3627046/1‑94 (MQ=60)

                                                                TCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGGAGACAGGCGACGGAATAAGTCATCCTGGATCACGTC                               >  SRR4302533.5315371/1‑94 (MQ=60)

                                                                TCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTC                               <  SRR4302533.537573/94‑1 (MQ=60)

                                                                TCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTC                               <  SRR4302533.3237162/94‑1 (MQ=60)

                                                                TCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTC                               <  SRR4302533.3278848/94‑1 (MQ=60)

                                                                GCAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTC                               <  SRR4302533.5140878/94‑1 (MQ=60)

                                                                 CAGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCG                              >  SRR4302533.108099/1‑94 (MQ=60)

                                                                  AGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCGT                             >  SRR4302533.3127725/1‑94 (MQ=60)

                                                                  AGAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATACTGGATCACGTCGT                             >  SRR4302533.2729068/1‑94 (MQ=60)

                                                                   GAGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCGTT                            <  SRR4302533.3794700/94‑1 (MQ=60)

                                                                    AGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGTTATGCAAACAGAAGACGGCATACGTCATCCTGGATCACGTCGTTG                           <  SRR4302533.1063993/94‑1 (MQ=60)

                                                                    AGCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATACTGGATCACGTCGTTG                           >  SRR4302533.1831029/1‑94 (MQ=60)

                                                                     GCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCGTTGG                          <  SRR4302533.893484/94‑1 (MQ=60)

                                                                     GCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCGTTGG                          <  SRR4302533.5671325/94‑1 (MQ=60)

                                                                     GCTTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCGTTGG                          <  SRR4302533.5906379/94‑1 (MQ=60)

                                                                       TTCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGACTACGGCATCCTGGATCACGTCGTTGGCT                        >  SRR4302533.1517177/1‑94 (MQ=60)

                                                                        TCTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCGTTGGATT                       >  SRR4302533.5841566/1‑94 (MQ=60)

                                                                         CTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGGCAGGCGAAGGAATACGctctcccggatcacctcagtgggctt                      >  SRR4302533.1420865/1‑68 (MQ=60)

                                                                         CTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCCCGTCGTTGGATTT                      >  SRR4302533.1492729/1‑94 (MQ=60)

                                                                         CTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTTGTTGGGTTT                      >  SRR4302533.956046/1‑94 (MQ=60)

                                                                         CTGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCGTTGGATTT                      <  SRR4302533.167082/94‑1 (MQ=60)

                                                                          TGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTGATCCTGGATCACGTCGTTGGATTTA                     <  SRR4302533.2822737/94‑1 (MQ=60)

                                                                          TGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCGTTGGATTTA                     <  SRR4302533.4505772/94‑1 (MQ=60)

                                                                          TGCTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCGTTGGATTTA                     <  SRR4302533.3960779/94‑1 (MQ=60)

                                                                            CTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCGTTGGATTTATC                   <  SRR4302533.3250591/94‑1 (MQ=60)

                                                                            CTGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCGTTGGATTTATC                   <  SRR4302533.4696674/94‑1 (MQ=60)

                                                                             TGTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCGTTGGATTTATCT                  >  SRR4302533.4360171/1‑94 (MQ=60)

                                                                              GTCAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCGTTGGATTTATCTT                 >  SRR4302533.5656213/1‑94 (MQ=60)

                                                                                CAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCGTTGGATTTATCTTCA               <  SRR4302533.1707725/94‑1 (MQ=60)

                                                                                CAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCGTTGGATTTATCTTCA               >  SRR4302533.3077147/1‑94 (MQ=60)

                                                                                CAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCGTTGGATTTATCTTCA               <  SRR4302533.5236072/94‑1 (MQ=60)

                                                                                CAGGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCGTTGGATTTATCTTCA               <  SRR4302533.3927371/94‑1 (MQ=60)

                                                                                  GGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCGTTGGATTTATCTTCAAA             <  SRR4302533.5906046/94‑1 (MQ=60)

                                                                                  GGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCGTTGGATTTATCTTCAAA             <  SRR4302533.3739173/94‑1 (MQ=60)

                                                                                  GGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCGTTGGATTTATCTTCAAA             >  SRR4302533.1956283/1‑94 (MQ=60)

                                                                                  GGAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCGTTGGATTTATCTTCAAA             <  SRR4302533.1110395/94‑1 (MQ=60)

                                                                                   GAATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCGTTGGATTTATCTTCAAAG            <  SRR4302533.5858817/94‑1 (MQ=60)

                                                                                    AATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCGTTGGATTTATCTTCAAAGA           >  SRR4302533.5500152/1‑94 (MQ=60)

                                                                                    AATGCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCGTTGGATTTATCTTCAAAGA           <  SRR4302533.4803465/94‑1 (MQ=60)

                                                                                       GCCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGTATACGTCATCCTCGATCACGTCGTTGGGTTTATCTTCAAAAAATA        >  SRR4302533.2551342/1‑94 (MQ=60)

                                                                                        CCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCGTTGGATTTATCTTCAAAGAATAG       >  SRR4302533.2025553/1‑94 (MQ=60)

                                                                                        CCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCGTTGGATTTATCTTCAAAGAATAG       >  SRR4302533.5016674/1‑94 (MQ=60)

                                                                                        CCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCGTTGGATTTATCTTCAAAGAATAG       <  SRR4302533.5202505/94‑1 (MQ=60)

                                                                                        CCTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCGTTGGATTTATCTTCAAAGAATAG       >  SRR4302533.942147/1‑94 (MQ=60)

                                                                                         CTGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCGTTGGATTTATCTTCAAAGAATAGA      <  SRR4302533.5066655/94‑1 (MQ=60)

                                                                                          TGGCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCGTTGGATTTATCTTCAAAGAATAGAT     <  SRR4302533.209008/94‑1 (MQ=60)

                                                                                            GCGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCGTTGGATTTATCTTCAAAGAATAGATCG   <  SRR4302533.304144/94‑1 (MQ=60)

                                                                                             CGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATCAGTCATCCTGGATCCCGTCGTTGGATTTATCTTCAAAAAATAGAactc  >  SRR4302533.1186194/1‑90 (MQ=60)

                                                                                             CGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCGTTGGATTTATCTTCAAAGAATAGATCGC  >  SRR4302533.2263424/1‑94 (MQ=60)

TTCGGGCAGGTTTCGCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGTGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCGTTGGATTTATCTTCAAAGAATAGATCGC  >  NC_000913/1439891‑1440077

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`