Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,503,660 T→C T149A (ACG→GCG)  b1433 ← putative membrane transport protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,503,6600TC100.0% 670.0 / NA 205T149A (ACG→GCG) b1433putative membrane transport protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (95/110);  total (95/110)

Only 100 of 208 total aligned reads displayed.

CGATCCCAATAATCATCGCGGCAATTACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGTAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGGCAAGCATTGCCGCCGCAAGCGAGTGCGGAATAA  >  NC_000913/1503570‑1503749
                                                                                          |                                                                                         
cgatcCCAATAATCATCGCGGCAATTACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCaa                                                                                         <  2:3685411/93‑1 (MQ=255)
 gatcCCAATAATCATCGCGGCAATTACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCaaa                                                                                        >  2:460333/1‑93 (MQ=255)
 gatcCCAATAATCATCGCGGCAATTACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCaaa                                                                                        <  2:2331226/93‑1 (MQ=255)
 gatcCCAATAATCATCGCGGCAATTACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCaaa                                                                                        <  1:5841810/93‑1 (MQ=255)
    cccAATAATCATCGCGGCAATTACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTg                                                                                     <  1:282256/93‑1 (MQ=255)
     ccAATAATCATCGCGGCAATTACCGCATAGCGCGGGGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGa                                                                                    >  2:3415831/1‑93 (MQ=255)
     ccAATAATCATCGCGGCAATTACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGa                                                                                    >  1:4366003/1‑93 (MQ=255)
     ccAATAATCATCGCGGCAATTACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGa                                                                                    >  2:614179/1‑93 (MQ=255)
      cAATAATCATCGCGGCAATTACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGAc                                                                                   <  1:5711315/93‑1 (MQ=255)
      cAATAATCATCGCGGCAATTACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGAc                                                                                   <  2:717644/93‑1 (MQ=255)
       aataatCATCGCGGCAATTACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGAcc                                                                                  <  2:4320254/93‑1 (MQ=255)
        ataatCATCGCGGCAATTACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCg                                                                                 <  1:941142/93‑1 (MQ=255)
        ataatCATCGCGGCAATTACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCg                                                                                 <  1:1870882/93‑1 (MQ=255)
        ataatCATCGCGGCAATTACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCg                                                                                 >  1:3563872/1‑93 (MQ=255)
           atcatcGCGGCAATTACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTcc                                                                              <  1:3937119/93‑1 (MQ=255)
           atcatcGCGGCAATTACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTcc                                                                              <  1:2631069/93‑1 (MQ=255)
           atcatcGCGGCAATTACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACAAGCAACATACTTCCACACAACGCAAATTGACCGTcc                                                                              >  1:5258673/1‑93 (MQ=255)
            tcatcGCGGCAATTACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCa                                                                             <  1:3971950/93‑1 (MQ=255)
             catcGCGGCAATTACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAg                                                                            <  2:250815/93‑1 (MQ=255)
              atcGCGGCAATTACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTGCACACAACGCAAATTGACCGTCCAGa                                                                           >  2:5092146/1‑93 (MQ=255)
              atcGCGGCAATTACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGa                                                                           >  1:4161119/1‑93 (MQ=255)
               tcGCGGCAATTACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGAc                                                                          >  1:2788874/1‑93 (MQ=255)
                cgcgGCAATTACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACt                                                                         <  1:3738243/93‑1 (MQ=255)
                cgcgGCAATTACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACt                                                                         <  2:11240/93‑1 (MQ=255)
                 gcgGCCATTACCGAATAGCGCTGCGCACCGGGCTTGGGTGCCAGCCATACCAGCAACATACTTCCAATCAACGCAAATTGACAGACCAgtgtg                                                                        >  2:2461648/1‑89 (MQ=255)
                 gcgGCAATTACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTg                                                                        >  1:3109036/1‑93 (MQ=255)
                  cgGCAATTACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTgg                                                                       <  1:5613193/93‑1 (MQ=255)
                   ggCAATTACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGc                                                                      >  2:3004101/1‑93 (MQ=255)
                      aaTTACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCaaa                                                                   <  2:82624/93‑1 (MQ=255)
                      aaTTACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCaaa                                                                   <  2:408885/93‑1 (MQ=255)
                       aTTACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAAc                                                                  <  2:2419543/93‑1 (MQ=255)
                          aCCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGcc                                                               <  2:3853912/93‑1 (MQ=255)
                          aCCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGcc                                                               >  1:5468517/1‑93 (MQ=255)
                           ccGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCt                                                              >  2:4276414/1‑93 (MQ=255)
                           ccGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCt                                                              <  1:728035/93‑1 (MQ=255)
                            cGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTg                                                             <  1:4615308/93‑1 (MQ=255)
                             gCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCACATTGACCGTCCAGACTGGCAAACGCCTGt                                                            >  1:4523923/1‑93 (MQ=255)
                             gCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGt                                                            >  1:348417/1‑93 (MQ=255)
                             gCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGt                                                            >  2:4211620/1‑93 (MQ=255)
                              cATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTa                                                           <  1:1080556/93‑1 (MQ=255)
                              cATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTa                                                           >  2:2378368/1‑93 (MQ=255)
                              cATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTa                                                           >  1:3395332/1‑93 (MQ=255)
                               aTAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTaa                                                          >  1:3320217/1‑93 (MQ=255)
                                tAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTaaa                                                         <  1:2191419/93‑1 (MQ=255)
                                 aGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAAc                                                        <  2:4768820/93‑1 (MQ=255)
                                    gcggcgCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCaa                                                     <  1:1645528/93‑1 (MQ=255)
                                    gcggcgCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCaa                                                     >  2:2626450/1‑93 (MQ=255)
                                     cggcgCACCGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACTCCTGTAAACCaaa                                                    <  2:6194498/93‑1 (MQ=255)
                                     cggcgCACCGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCaaa                                                    <  1:511132/93‑1 (MQ=255)
                                     cggcgCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCaaa                                                    >  1:580748/1‑93 (MQ=255)
                                      ggcgCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAg                                                   <  2:1776851/93‑1 (MQ=255)
                                       gcgcAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGc                                                  <  1:3598277/93‑1 (MQ=255)
                                        cgcAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCg                                                 <  1:3017581/93‑1 (MQ=255)
                                         gcAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGt                                                >  1:2927113/1‑93 (MQ=255)
                                          cAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGta                                               >  1:231613/1‑93 (MQ=255)
                                           aaCGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGtaa                                              <  1:1194526/93‑1 (MQ=255)
                                           aaCGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGtaa                                              >  1:4096938/1‑93 (MQ=255)
                                            aCGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGtaat                                             >  1:808993/1‑93 (MQ=255)
                                            aCGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGtaat                                             >  2:4702599/1‑93 (MQ=255)
                                             cGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGtaata                                            >  1:4752181/1‑93 (MQ=255)
                                                 cTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAAt                                        >  1:2043986/1‑93 (MQ=255)
                                                 cTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAAt                                        >  1:6087413/1‑93 (MQ=255)
                                                 cTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAAt                                        >  1:3654308/1‑93 (MQ=255)
                                                     gTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCg                                    >  1:1844167/1‑93 (MQ=255)
                                                     gTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCg                                    >  2:5313642/1‑93 (MQ=255)
                                                      ttGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCgg                                   >  1:2438120/1‑93 (MQ=255)
                                                      ttGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCgg                                   <  2:289722/93‑1 (MQ=255)
                                                         ccagccaTACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGGCaa                                >  2:4064954/1‑93 (MQ=255)
                                                           agccaTACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGGCAAGc                              >  2:1411134/1‑93 (MQ=255)
                                                           agccaTACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGGCAAGc                              <  2:213410/93‑1 (MQ=255)
                                                            gccaTACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGGCAAGCa                             <  1:5996397/93‑1 (MQ=255)
                                                            gccaTACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGGCAAGCa                             <  1:200873/93‑1 (MQ=255)
                                                            gccaTACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCCGCAAGCa                             >  1:188886/1‑93 (MQ=255)
                                                              caTACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGGCAAGCAtt                           <  1:5931934/93‑1 (MQ=255)
                                                               aTACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGGCAAGCATTg                          <  2:1965621/93‑1 (MQ=255)
                                                                tACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGGCAAGCATTgc                         >  2:2493364/1‑93 (MQ=255)
                                                                 aCCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGGCAAGCATTgcc                        >  1:3249871/1‑93 (MQ=255)
                                                                  ccAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGGCAAGCATTgccg                       <  2:3283168/93‑1 (MQ=255)
                                                                  ccAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGGCAAGCATTgccg                       >  2:5638603/1‑93 (MQ=255)
                                                                     gCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGGCAAGCATTGccgccg                    >  2:2814617/1‑93 (MQ=255)
                                                                     gCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGGCAAGCATTGccgccg                    >  2:128230/1‑93 (MQ=255)
                                                                     gCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGGCAAGCATTGccgccg                    >  2:3391881/1‑93 (MQ=255)
                                                                       aaCATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGGCAAGCATTGCCGCCGCa                  >  2:5688556/1‑93 (MQ=255)
                                                                          aTACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGGCAAGCATTGCCGCCGCAAGc               >  1:4939554/1‑93 (MQ=255)
                                                                           tACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCTGCAAGCATTGCCGCCGCAAGCg              >  1:6110410/1‑93 (MQ=255)
                                                                           tACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGGCAAGCATTGCCGCCGCAAGCg              <  1:4200030/93‑1 (MQ=255)
                                                                             cTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGGCAAGCATTGCCGCCGCAAGCGAg            <  2:3761225/93‑1 (MQ=255)
                                                                             cTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGGCAAGCATTGCCGCCGCAAGCGAg            <  1:3427271/93‑1 (MQ=255)
                                                                               tCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGGCAAGCATTGCCGCCGCAAGCGAGTg          >  2:4937538/1‑93 (MQ=255)
                                                                               tCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGGCAAGCATTGCCGCCGCAAGCGAGTg          >  1:5422692/1‑93 (MQ=255)
                                                                               tCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGGCAAGCATTGCCGCCGCAAGCGAGTg          >  1:1372675/1‑93 (MQ=255)
                                                                                ccACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGGGAAGCCATGCCGCCGCCAGCGAgggg         >  2:4407130/1‑90 (MQ=255)
                                                                                 cacacaACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGGCAAGCATTGCCGCCGCAAGCGAGTGCg        >  1:5560732/1‑93 (MQ=255)
                                                                                 cacacaACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGGCAAGCATTGCCGCCGCAAGCGAGTGCg        <  1:2358532/93‑1 (MQ=255)
                                                                                  acacaACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGGCAAGCATTGCCGCCGCAAGCGAGTGCgg       >  2:396230/1‑93 (MQ=255)
                                                                                  acacaACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGGCAAGCATTGCCGCCGCAAGCGAGTGCgg       >  2:3154478/1‑93 (MQ=255)
                                                                                    acaACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGGCAAGCATTGCCGCCGCAAGCGAGTGCGGaa     <  2:5860551/93‑1 (MQ=255)
                                                                                      aaCGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGGCAAGCATTGCCGCCGCAAGCGAGTGCGGaata   >  1:6235754/1‑93 (MQ=255)
                                                                                       aCGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGGCTAGCATTGCCGCCGCAAGCGAGTGCGGaataa  <  2:5039246/93‑1 (MQ=255)
                                                                                       aCGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGGCAAGCATTGCCGCCGCAAGCGAGTGCGGaataa  <  2:908966/93‑1 (MQ=255)
                                                                                          |                                                                                         
CGATCCCAATAATCATCGCGGCAATTACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGTAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGGCAAGCATTGCCGCCGCAAGCGAGTGCGGAATAA  >  NC_000913/1503570‑1503749

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TCACGATCCCAATAATCATCGCGGCAATTACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGTAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGGCAAGCATTGCCGCCGCAAGCGAGTGCGGAATAATGCG  >  NC_000913/1503567‑1503753
                                                                                             |                                                                                             
TCACGATCCCAATAATCATCGCGGCAATTACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGC                                                                                               <  SRR4302533.5568571/94‑1 (MQ=60)
 CACGATCCCAATAATCATCGCGGCAATTACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCA                                                                                              <  SRR4302533.4322305/94‑1 (MQ=60)
    GATCCCAATAATCATCGCGGCAATTACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAAT                                                                                           <  SRR4302533.5877129/94‑1 (MQ=60)
    GATCCCAATAATCATCGCGGCAATTACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAAT                                                                                           <  SRR4302533.2820514/94‑1 (MQ=60)
      TCCCAATAATCATCGCGGCAATTACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTG                                                                                         >  SRR4302533.3975488/1‑94 (MQ=60)
       CCCAATAATCATCGCGGCAATTACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGA                                                                                        >  SRR4302533.6160642/1‑94 (MQ=60)
       CCCAATAATCATCGCGGCAATTACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGA                                                                                        >  SRR4302533.4392360/1‑94 (MQ=60)
       CCCAATAATCATCGCGGCAATTACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGA                                                                                        <  SRR4302533.283983/94‑1 (MQ=60)
         CAATAATCATCGCGGCAATTACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACC                                                                                      <  SRR4302533.5745814/94‑1 (MQ=60)
         CAATAATCATCGCGGCAATTACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACC                                                                                      <  SRR4302533.5131191/94‑1 (MQ=60)
         CAATAATCATCGCGGCAATTACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACC                                                                                      <  SRR4302533.4614148/94‑1 (MQ=60)
         CAATAATCATCGCGGCAATTACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACC                                                                                      >  SRR4302533.378388/1‑94 (MQ=60)
          AATAATCATCGCGGCAATTACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCG                                                                                     >  SRR4302533.3585832/1‑94 (MQ=60)
           ATAATCATCGCGGCAATTACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGT                                                                                    <  SRR4302533.946673/94‑1 (MQ=60)
           ATAATCATCGCGGCAATTACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGT                                                                                    <  SRR4302533.2616558/94‑1 (MQ=60)
           ATAATCATCGCGGCAATTACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGT                                                                                    >  SRR4302533.2520427/1‑94 (MQ=60)
           ATAATCATCGCGGCAATTACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGT                                                                                    <  SRR4302533.1882286/94‑1 (MQ=60)
             AATCATCGCGGCAATTACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCC                                                                                  <  SRR4302533.5657529/94‑1 (MQ=60)
             AATCATCGCGGCAATTACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACAAGCAACATACTTCCACACAACGCAAATTGACCGTCC                                                                                  >  SRR4302533.5290247/1‑94 (MQ=60)
             AATCATCGCGGAAATTACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCC                                                                                  <  SRR4302533.5099237/94‑1 (MQ=60)
              ATCATCGCGGCAATTACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCA                                                                                 <  SRR4302533.4224210/94‑1 (MQ=60)
              ATCATCGCGGCAATTACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCA                                                                                 <  SRR4302533.3961154/94‑1 (MQ=60)
              ATCATCGCGGCAATTACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCA                                                                                 <  SRR4302533.2647240/94‑1 (MQ=60)
               TCATCGCGGCAATTACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAG                                                                                <  SRR4302533.3619875/94‑1 (MQ=60)
               TCATCGCGGCAATTACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAG                                                                                <  SRR4302533.3996140/94‑1 (MQ=60)
                CATCGCGGCAATTACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGA                                                                               >  SRR4302533.4186336/1‑94 (MQ=60)
                 ATCGCGGCAATTACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGAC                                                                              >  SRR4302533.2806017/1‑94 (MQ=60)
                  TCGCGGCAATTACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACT                                                                             <  SRR4302533.375224/94‑1 (MQ=60)
                   CGCGGCAATTACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTG                                                                            >  SRR4302533.3128147/1‑94 (MQ=60)
                   CGCGGCAATTACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTG                                                                            <  SRR4302533.3761170/94‑1 (MQ=60)
                    GCGGCAATTACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGG                                                                           >  SRR4302533.1440918/1‑94 (MQ=60)
                     CGGCAATTACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGC                                                                          <  SRR4302533.5647120/94‑1 (MQ=60)
                      GGCAATTACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCA                                                                         <  SRR4302533.5852627/94‑1 (MQ=60)
                        CAATTACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAA                                                                       <  SRR4302533.3150675/94‑1 (MQ=60)
                        CAATTACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAA                                                                       >  SRR4302533.6145114/1‑94 (MQ=60)
                         AATTACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAAC                                                                      >  SRR4302533.6021711/1‑94 (MQ=60)
                            TACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCC                                                                   <  SRR4302533.5464980/94‑1 (MQ=60)
                            TACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCC                                                                   >  SRR4302533.5501476/1‑94 (MQ=60)
                            TACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCC                                                                   >  SRR4302533.4117560/1‑94 (MQ=60)
                             ACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCT                                                                  <  SRR4302533.830422/94‑1 (MQ=60)
                              CCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTG                                                                 <  SRR4302533.732336/94‑1 (MQ=60)
                               CGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCACATTGACCGTCCAGACTGGCAAACGCCTGT                                                                >  SRR4302533.4551311/1‑94 (MQ=60)
                               CGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGT                                                                <  SRR4302533.4643259/94‑1 (MQ=60)
                               CGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGT                                                                >  SRR4302533.350544/1‑94 (MQ=60)
                               CGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGT                                                                <  SRR4302533.4422738/94‑1 (MQ=60)
                               CGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGT                                                                >  SRR4302533.5820599/1‑94 (MQ=60)
                               CGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGT                                                                >  SRR4302533.2861442/1‑94 (MQ=60)
                                GCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTA                                                               >  SRR4302533.3416300/1‑94 (MQ=60)
                                GCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTA                                                               >  SRR4302533.1897374/1‑94 (MQ=60)
                                 CATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAA                                                              >  SRR4302533.3340726/1‑94 (MQ=60)
                                 CATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAA                                                              <  SRR4302533.1086928/94‑1 (MQ=60)
                                   TAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAAC                                                            <  SRR4302533.2204923/94‑1 (MQ=60)
                                       GCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAA                                                        <  SRR4302533.3035421/94‑1 (MQ=60)
                                       GCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAA                                                        <  SRR4302533.1655492/94‑1 (MQ=60)
                                       GCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAA                                                        >  SRR4302533.584164/1‑94 (MQ=60)
                                        gggcgcacgggctTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAG                                                       <  SRR4302533.4930995/81‑1 (MQ=60)
                                        CGGCGCACCGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAG                                                       <  SRR4302533.514170/94‑1 (MQ=60)
                                         GGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGC                                                      <  SRR4302533.3586340/94‑1 (MQ=60)
                                         GGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGC                                                      <  SRR4302533.3384175/94‑1 (MQ=60)
                                          GCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCG                                                     <  SRR4302533.3620414/94‑1 (MQ=60)
                                           CGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGT                                                    <  SRR4302533.3036036/94‑1 (MQ=60)
                                           CGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGT                                                    >  SRR4302533.2945023/1‑94 (MQ=60)
                                           CGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGT                                                    <  SRR4302533.1995096/94‑1 (MQ=60)
                                            GCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTA                                                   >  SRR4302533.3653058/1‑94 (MQ=60)
                                            GCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTA                                                   >  SRR4302533.233044/1‑94 (MQ=60)
                                             CAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAA                                                  >  SRR4302533.4121878/1‑94 (MQ=60)
                                              AACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAAT                                                 <  SRR4302533.5387611/94‑1 (MQ=60)
                                              AACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAAT                                                 >  SRR4302533.813743/1‑94 (MQ=60)
                                              AACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAAT                                                 <  SRR4302533.1201705/94‑1 (MQ=60)
                                               ACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATA                                                >  SRR4302533.4780993/1‑94 (MQ=60)
                                               ACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATA                                                <  SRR4302533.2358142/94‑1 (MQ=60)
                                                CGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAA                                               <  SRR4302533.4280948/94‑1 (MQ=60)
                                                CGCCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAA                                               <  SRR4302533.5638619/94‑1 (MQ=60)
                                                 GGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAA                                              >  SRR4302533.1087416/1‑94 (MQ=60)
                                                   CCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAAT                                            >  SRR4302533.2056586/1‑94 (MQ=60)
                                                   CCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAAT                                            >  SRR4302533.6124213/1‑94 (MQ=60)
                                                   CCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAAT                                            >  SRR4302533.3676774/1‑94 (MQ=60)
                                                    CTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATC                                           <  SRR4302533.3056563/94‑1 (MQ=60)
                                                     TTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCC                                          <  SRR4302533.5957528/94‑1 (MQ=60)
                                                       GGTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCG                                        >  SRR4302533.1855416/1‑94 (MQ=60)
                                                        GTTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGG                                       >  SRR4302533.2453175/1‑94 (MQ=60)
                                                         TTGCCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGGC                                      >  SRR4302533.2038314/1‑94 (MQ=60)
                                                            GCAGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGGCTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGGCAAG                                   <  SRR4302533.2071666/94‑1 (MQ=60)
                                                              AGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGGCAAGCA                                 >  SRR4302533.5509637/1‑94 (MQ=60)
                                                              AGCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCCGCAAGCA                                 >  SRR4302533.190062/1‑94 (MQ=60)
                                                               GCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGGCAAGCAT                                <  SRR4302533.6032716/94‑1 (MQ=60)
                                                               GCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGGCAAGCAT                                <  SRR4302533.202147/94‑1 (MQ=60)
                                                               GCCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGGCAAGCAT                                <  SRR4302533.1864212/94‑1 (MQ=60)
                                                                CCATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGGCAAGCATT                               >  SRR4302533.3552799/1‑94 (MQ=60)
                                                                 CATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGGCAAGCATTG                              <  SRR4302533.350413/94‑1 (MQ=60)
                                                                 CATACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGGCAAGCATTG                              <  SRR4302533.5967795/94‑1 (MQ=60)
                                                                   TACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGGCAAGCATTGCC                            >  SRR4302533.3269910/1‑94 (MQ=60)
                                                                    ACCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGGCAAGCATTGCCG                           >  SRR4302533.4645002/1‑94 (MQ=60)
                                                                     CCAGCAACATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGGCAAGCATTGCCGC                          >  SRR4302533.2439370/1‑94 (MQ=60)
                                                                            CATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGGCAAGCATTGCCGCCGCAAGC                   >  SRR4302533.4969455/1‑94 (MQ=60)
                                                                             ATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCTGCAAGCATTGCCGCCGCAAGCG                  >  SRR4302533.6147294/1‑94 (MQ=60)
                                                                             ATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGGCAAGCATTGCCGCCGCAAGCG                  <  SRR4302533.6142995/94‑1 (MQ=60)
                                                                             ATACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGGCAAGCATTGCCGCCGCAAGCG                  <  SRR4302533.786745/94‑1 (MQ=60)
                                                                              TACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGGCAAGCATTGCCGCCGCAAGCGA                 <  SRR4302533.2208306/94‑1 (MQ=60)
                                                                              TACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGGCAAGCATTGCCGCCGCAAGCGA                 <  SRR4302533.4225444/94‑1 (MQ=60)
                                                                              TACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGGCAAGCATTGCCGCCGCAAGCGA                 <  SRR4302533.6114760/94‑1 (MQ=60)
                                                                               ACTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGGCAAGCATTGCCGCCGCAAGCGAG                >  SRR4302533.6322662/1‑94 (MQ=60)
                                                                                CTTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGGCAAGCATTGCCGCCGCAAGCGAGT               <  SRR4302533.3448442/94‑1 (MQ=60)
                                                                                 TTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGGCAAGCATTGCCGCCGCAAGCGAGTG              >  SRR4302533.5455323/1‑94 (MQ=60)
                                                                                 TTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGGCAAGCATTGCCGCCGCAAGCGAGTG              >  SRR4302533.1380933/1‑94 (MQ=60)
                                                                                 TTCCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAAGCCCGGCAAGCATTGCCGCCGCAAGCGAGTG              <  SRR4302533.137078/94‑1 (MQ=60)
                                                                                   CCACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGGCAAGCATTGCCGCCGCAAGCGAGTGCG            >  SRR4302533.5594337/1‑94 (MQ=60)
                                                                                    CACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGGCAAGCATTGCCGCCGCAAGCGAGTGCGG           >  SRR4302533.4163186/1‑94 (MQ=60)
                                                                                    CACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGGCAAGCATTGCCGCCGCAAGCGAGTGCGG           <  SRR4302533.2373107/94‑1 (MQ=60)
                                                                                     ACACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGGCAAGCATTGCCGCCGCAAGCGAGTGCGGA          >  SRR4302533.2729368/1‑94 (MQ=60)
                                                                                      CACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGGCAAGCATTGCCGCCGCAAGCGAGTGCGGAA         >  SRR4302533.3313321/1‑94 (MQ=60)
                                                                                      CACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGGCAAGCATTGCCGCCGCAAGCGAGTGCGGAA         >  SRR4302533.5160579/1‑94 (MQ=60)
                                                                                       ACAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGGCAAGCATTGCCGCCGCAAGCGAGTGCGGGAT        >  SRR4302533.3420897/1‑94 (MQ=60)
                                                                                        CAACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGGCAAGCATTGCCGCCGCAAGCGAGTGCGGAATA       >  SRR4302533.6273097/1‑94 (MQ=60)
                                                                                         AACGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGGCAAGCATTGCCGCCGCAAGCGAGTGCGGAATAA      >  SRR4302533.173152/1‑94 (MQ=60)
                                                                                           CGCAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGGCAAGCATTGCCGCCGCAAGCGAGTGCGGAATAATG    <  SRR4302533.4324348/94‑1 (MQ=60)
                                                                                             CAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGGCAAGCATTGCCGCCGCAAGCGAGTGCGGAATAATGCG  <  SRR4302533.6169020/94‑1 (MQ=60)
                                                                                             CAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGGCAAGCATTGCCGCCGCAAGCGAGTGCGGAATAATGCG  <  SRR4302533.6068729/94‑1 (MQ=60)
                                                                                             |                                                                                             
TCACGATCCCAATAATCATCGCGGCAATTACCGCATAGCGCGGCGCAACGGCCTTGGTTGCCAGCCATACCAGCAACATACTTCCACACAACGTAAATTGACCGTCCAGACTGGCAAACGCCTGTAAACCAAAGCGTAATAAAATCCCGGCAAGCATTGCCGCCGCAAGCGAGTGCGGAATAATGCG  >  NC_000913/1503567‑1503753

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑