Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,531,361 |
T→C |
H188R (CAT→CGT) |
b1462 ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,531,361 | 0 | T | C | 100.0%
| 601.7
/ NA
| 185 | H188R (CAT→CGT) | b1462 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (110/75); total (110/75) |
Only 100 of 192 total aligned reads displayed.
GCTTTGATAAAGAAACC‑TGGTT‑ATAGCATGAATGCTTAACCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGATGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGATACTACTTCGCCAAAC > NC_000913/1531271‑1531450
|
gCTTTGATAAAGAAACC‑TGGTT‑ATAGCATGAATGCTTAACCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGc > 2:3540671/1‑93 (MQ=255)
tttGATAAAGAAACC‑TGGTT‑ATAGCATGAATGCTTAACCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCaa > 1:5681389/1‑93 (MQ=255)
tttGATAAAGAAACC‑TGGTT‑ATAGCATGAATGCTTAACCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCaa > 1:5241708/1‑93 (MQ=255)
aTAAAGAAACC‑TGGTT‑ATAGCATGAATGCTTAACCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTa > 2:1193491/1‑93 (MQ=255)
aaaaaaaACCGTGTTT‑AAACCATAAATCCTCACCCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTa < 1:2977054/92‑1 (MQ=255)
aaaGAAACC‑TGGTT‑ATAGCATGAATGCTTAACCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTAtt > 1:5972957/1‑93 (MQ=255)
aaaGAAACC‑TGGTT‑ATAGCATGAATGCTTAACCCGCCATAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTAtt > 2:2070005/1‑93 (MQ=255)
aaaaaCC‑TTGTTAAAAGAATAAATCCTAACCCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTg < 2:4335867/91‑1 (MQ=255)
gAAACC‑TGGTT‑ATAGCATGAATGCTTAACCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAg > 2:3430826/1‑93 (MQ=255)
gAAACC‑TGGTT‑ATAGCATGAATGCTTAACCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAg > 2:5941727/1‑93 (MQ=255)
aaCC‑TGGTT‑ATAGCATGAATGCTTAACCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCt > 2:4885955/1‑93 (MQ=255)
tGGTT‑ATAGCATGACTCCTCACCCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTatc < 1:4890996/93‑1 (MQ=255)
tGGTT‑ATAGCATGAATGCTTAACCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTatc > 2:666278/1‑93 (MQ=255)
ttt‑ATAGTATAAATGCTCACCCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTatcat < 1:849142/92‑1 (MQ=255)
t‑ataGCATGAATGCTTAACCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTatcatca > 2:1464175/1‑93 (MQ=255)
t‑ataGCATGAATGCTTAACCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTatcatca > 1:768209/1‑93 (MQ=255)
gCATGAATGCTTAACCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCaa > 1:4025393/1‑93 (MQ=255)
cATGAATGCTTAACCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCaaa > 1:1965445/1‑93 (MQ=255)
agaaaTGCTAACCCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAAc < 2:439511/90‑1 (MQ=255)
aTGAATGCTTAACCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAAc > 2:3617368/1‑93 (MQ=255)
aTGAATGCTTAACCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAAc > 2:299944/1‑93 (MQ=255)
tGAATGCTTAACCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACt > 1:4287886/1‑93 (MQ=255)
tGAATGCTTAACCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACt > 1:4988425/1‑93 (MQ=255)
gAATGCTTAACCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTg > 2:350174/1‑93 (MQ=255)
aaTGCTTAACCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGc > 2:3755214/1‑93 (MQ=255)
tGCTTAACCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCa > 2:762412/1‑93 (MQ=255)
tGCTTAACCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCa > 1:5539374/1‑93 (MQ=255)
cTTCACCCGCCGTAACACGTTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGc < 2:1040560/93‑1 (MQ=255)
cTTAACCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGc > 1:5726382/1‑93 (MQ=255)
aaccccGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCgg < 1:1437799/90‑1 (MQ=255)
aaCCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGc > 2:121031/1‑93 (MQ=255)
ccccGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGcc < 2:2787782/92‑1 (MQ=255)
ccccGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGcc < 1:2390383/92‑1 (MQ=255)
cccGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCt < 1:1207819/93‑1 (MQ=255)
cagccgTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCtt < 2:3512170/91‑1 (MQ=255)
ctccgTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTc < 1:2421561/91‑1 (MQ=255)
gccgTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCg > 2:5885026/1‑93 (MQ=255)
gccgTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCg < 2:5773666/93‑1 (MQ=255)
ccgTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGa > 2:71420/1‑93 (MQ=255)
cgTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGAc > 1:466434/1‑93 (MQ=255)
gTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACa > 2:3112483/1‑93 (MQ=255)
gTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACa > 2:2930780/1‑93 (MQ=255)
gTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACa < 1:2332226/93‑1 (MQ=255)
tAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACaa < 2:4782861/93‑1 (MQ=255)
aaCACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACaaa < 1:4523477/93‑1 (MQ=255)
aaCACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACaaa < 2:2657803/93‑1 (MQ=255)
acacGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAAt > 2:2247146/1‑93 (MQ=255)
cGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATAcc < 1:3490748/93‑1 (MQ=255)
cGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATAcc < 2:6049434/93‑1 (MQ=255)
gCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATAccc < 2:3387598/93‑1 (MQ=255)
cTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGTCAGCGGCCTTCGACAAATACCCg > 1:2776142/1‑93 (MQ=255)
cTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCg < 1:227004/93‑1 (MQ=255)
ttGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGt < 1:1322410/93‑1 (MQ=255)
ttGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGt > 1:5878835/1‑93 (MQ=255)
tGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTg < 2:1731650/93‑1 (MQ=255)
tGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTg < 2:1791884/93‑1 (MQ=255)
gcggCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGc < 2:1111130/90‑1 (MQ=255)
gCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGc > 1:6304784/1‑93 (MQ=255)
gCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTc < 1:1016577/93‑1 (MQ=255)
cTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCt < 1:4192984/93‑1 (MQ=255)
tAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCg < 1:6202785/93‑1 (MQ=255)
aCAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCgct < 2:2881132/93‑1 (MQ=255)
aaaCGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCgctgc > 2:3789745/1‑93 (MQ=255)
aaaCGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCgctgc > 1:6078004/1‑93 (MQ=255)
aaaCGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCgctgc < 1:5739574/93‑1 (MQ=255)
aaaCGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCgctgc > 1:2180823/1‑93 (MQ=255)
aaaCATCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCgctgc < 1:5344421/93‑1 (MQ=255)
aaCGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCgctgct < 2:447928/93‑1 (MQ=255)
aaCGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCgctgct > 1:2260968/1‑93 (MQ=255)
cGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGa < 2:3892346/93‑1 (MQ=255)
gTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGAt > 1:1947044/1‑93 (MQ=255)
tCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGAta > 1:936647/1‑93 (MQ=255)
tCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGAta < 1:1860112/93‑1 (MQ=255)
cccAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGAtac < 2:26022/93‑1 (MQ=255)
cccAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGAtac < 1:2089525/93‑1 (MQ=255)
ccAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGAtact > 2:4616419/1‑93 (MQ=255)
cAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGAtacta > 2:544651/1‑93 (MQ=255)
cAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGAtacta < 1:2032520/93‑1 (MQ=255)
cAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGAtacta > 2:5562567/1‑93 (MQ=255)
aGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGAtactac > 2:5801354/1‑93 (MQ=255)
gCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGATactact > 2:2806768/1‑93 (MQ=255)
gCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGATactact > 2:4376541/1‑93 (MQ=255)
gCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGATactact < 2:5043388/93‑1 (MQ=255)
cACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGATACTACtt < 1:5298386/93‑1 (MQ=255)
aCCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGATACTACTTc > 2:936048/1‑93 (MQ=255)
aCCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGATACTACTTc > 2:2830558/1‑93 (MQ=255)
aCCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGATACTACTTc < 2:1533841/93‑1 (MQ=255)
ccTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGATACTACTTCg > 2:3667292/1‑93 (MQ=255)
ccTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGATACTACTTCg > 1:3235843/1‑93 (MQ=255)
ccTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGATACTACTTCg > 1:1117526/1‑93 (MQ=255)
ccTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGATACTACTTCg > 1:1031696/1‑93 (MQ=255)
cTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGATACTACTTCGc < 1:3407383/93‑1 (MQ=255)
tAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGATACTACTTCGcc > 2:1878005/1‑93 (MQ=255)
tAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGATACTACTTCGcc > 1:43282/1‑93 (MQ=255)
aaTGACGCAACGTATTGAGCTTGTCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGATACTACTTCgtcca > 2:3281765/1‑89 (MQ=255)
aaTGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGATACTACTTCGCCaa > 1:4836896/1‑93 (MQ=255)
atgacgCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGATACTACTTCGCCaaa < 2:4240599/93‑1 (MQ=255)
atgacgCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGATACTACTTCGCCaaa > 2:5348290/1‑93 (MQ=255)
atgacgCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGATACTACTTCGCCaaa > 1:3619876/1‑93 (MQ=255)
tgacgCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGATACTACTTCGCCAAAc > 1:5433178/1‑93 (MQ=255)
|
GCTTTGATAAAGAAACC‑TGGTT‑ATAGCATGAATGCTTAACCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGATGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGATACTACTTCGCCAAAC > NC_000913/1531271‑1531450
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GAGGCTTTGATAAAGAAACCTGGTTATAGCATGAATGCTTAACCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGATGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGATACTACTTCGCCAAACAGC > NC_000913/1531268‑1531453
|
gtgtatataaaaatgacactggtttatatcaaaatcttctacCCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGAC < SRR4302533.3340266/52‑1 (MQ=60)
gatttttaaaaaaaaaaccttgtttatagaataattcctaacCCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGAC < SRR4302533.3446255/52‑1 (MQ=60)
GAGGCTTTGATAAAGAAACCTGGTTATAGCATGAATGCTTAACCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGAC > SRR4302533.3932041/1‑94 (MQ=60)
GAGGCTTTGATAAAGAAACCTGGTTATAGCATGAATGCTTAACCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGAC > SRR4302533.4770382/1‑94 (MQ=60)
gtgttaaaaaaaagacccctgtttaaaacatgattgctaacCCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACG < SRR4302533.4693453/53‑1 (MQ=60)
AGGCTTTGATAAAGAAACCTGGTTATAGCATGAATGCTTAACCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACG > SRR4302533.5418108/1‑94 (MQ=60)
GGCTTTGATAAAGAAACCTGGTTATAGCATGAATGCTTAACCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGC > SRR4302533.4004817/1‑94 (MQ=60)
CTTTGATAAAGAAACCTGGTTATAGCATGAATGCTTAACCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAA > SRR4302533.5273216/1‑94 (MQ=60)
CTTTGATAAAGAAACCTGGTTATAGCATGAATGCTTAACCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAA > SRR4302533.5715706/1‑94 (MQ=60)
ttaaaaaaaaaaccttggtaaagcaatgaattctaacCCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAAC < SRR4302533.906798/57‑1 (MQ=60)
TTTGATAAAGAAACCTGGTTATAGCATGAATGCTTAACCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAAC > SRR4302533.4522811/1‑94 (MQ=60)
aaaaaaaaaccgtgttaatagagtaaattctcccCCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTA < SRR4302533.1193731/60‑1 (MQ=60)
GATAAAGAAACCTGGTTATAGCATGAATGCTTAACCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTA > SRR4302533.498943/1‑94 (MQ=60)
aaaaaaagcctttttaaaaaaataaattctcccCCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTAT < SRR4302533.1622277/61‑1 (MQ=60)
aaaaaaaaccttgtttatagaaaaatttctcacCCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTAT < SRR4302533.3900536/61‑1 (MQ=60)
aaaaaaaaccgtgtttaaaccataaatcctcacCCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTAT < SRR4302533.2995268/61‑1 (MQ=60)
aaaaaaaaccctttTTATAGCATAATTGCTTACCCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTAT < SRR4302533.1472033/80‑1 (MQ=60)
TAAAGAAACCTGGTTATAGCATGAATGCTTAACCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATT > SRR4302533.6009111/1‑94 (MQ=60)
TAAAGAAACCTGGTTATAGCATGAATGCTTAACCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATT > SRR4302533.2131953/1‑94 (MQ=60)
aaaaaacgttgttaataggttaaatgctcccCCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTG < SRR4302533.4483887/63‑1 (MQ=60)
aaaatcttgtttatagcataaatccttccCCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAG < SRR4302533.2773631/65‑1 (MQ=60)
aaaatcgttttaaaaaaatgattcctaccCCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAG < SRR4302533.1104453/65‑1 (MQ=60)
aactcgtgattaaaaaaggagcgtcctcCCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGC < SRR4302533.3521022/66‑1 (MQ=60)
AAACCTGGTTATAGCATGAATGCTTAACCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCT > SRR4302533.4100560/1‑94 (MQ=60)
aacttgtataaagaaggatgcctcacCCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTT < SRR4302533.5775920/68‑1 (MQ=60)
ACCTGGTTATAGCATGAATGCTTAACCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTA > SRR4302533.62242/1‑94 (MQ=60)
CCTGGTTATAGCATGAATGCTTAACCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTAT > SRR4302533.2273848/1‑94 (MQ=60)
CTGGTTATAGCATGAATGCTTAACCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATC > SRR4302533.1342874/1‑94 (MQ=60)
TGGTTATAGCATGACTCCTCACCCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCA < SRR4302533.4920628/94‑1 (MQ=60)
tttatagtataaatgctcacCCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATC < SRR4302533.854112/74‑1 (MQ=60)
GTTATAGCATGAATGCTTAACCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATC > SRR4302533.5407961/1‑94 (MQ=60)
TTATAGCATGAATGCTTAACCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCA > SRR4302533.772739/1‑94 (MQ=60)
ataacataaatgcacacCCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATC < SRR4302533.5884302/77‑1 (MQ=60)
aaagctaaaatgctaccCCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATC < SRR4302533.1298028/77‑1 (MQ=60)
ATAGCATGAATGCTTAACCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATC > SRR4302533.3271905/1‑94 (MQ=60)
ttatcactggcagtctCCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCA < SRR4302533.4290299/78‑1 (MQ=60)
anncnnnanccncnccnccnnnnnnACNCGNTTGCCGCTNGTNACAAANGTCCNAGNACCTAAATNACNCNNCGTATTGAGCTTATCATCATCA < SRR4302533.1482914/69‑1 (MQ=50)
AGCATGAATGCTTAACCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAA > SRR4302533.4049899/1‑94 (MQ=60)
GCATGAATGCTTAACCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAA > SRR4302533.1977452/1‑94 (MQ=60)
GCATGAATGCTTAACCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAA > SRR4302533.4787308/1‑94 (MQ=60)
CATGAATGCTTAACCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAAC > SRR4302533.936908/1‑94 (MQ=60)
atcatttcttgcCCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACT < SRR4302533.5766600/82‑1 (MQ=60)
ATGAATGCTTAACCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACT > SRR4302533.5018670/1‑94 (MQ=60)
ATGAATGCTTAACCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACT > SRR4302533.4313671/1‑94 (MQ=60)
taattgctcacCCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTG < SRR4302533.5529174/83‑1 (MQ=60)
gggtacctctcCCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTG < SRR4302533.3923772/83‑1 (MQ=60)
ATGCTTAACCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCA > SRR4302533.1839869/1‑94 (MQ=60)
ATGCTTAACCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCA > SRR4302533.5572823/1‑94 (MQ=60)
ttctaacCCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAG < SRR4302533.2580710/87‑1 (MQ=60)
tgctcccCCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAG < SRR4302533.5043130/87‑1 (MQ=60)
tgctcccCCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAG < SRR4302533.3147461/87‑1 (MQ=60)
GCTTAACCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGC > SRR4302533.5760953/1‑94 (MQ=60)
CCTTACCCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGC < SRR4302533.1180221/94‑1 (MQ=60)
gacccCCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCG < SRR4302533.4039285/89‑1 (MQ=60)
cgcacCCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCG < SRR4302533.2256492/89‑1 (MQ=60)
aacCCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGC < SRR4302533.1446479/91‑1 (MQ=60)
CCCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCT < SRR4302533.2405145/94‑1 (MQ=60)
CCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTT < SRR4302533.1215070/94‑1 (MQ=60)
CTCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCG < SRR4302533.2436511/94‑1 (MQ=60)
GCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGA < SRR4302533.5370942/94‑1 (MQ=60)
CCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGAC < SRR4302533.2287251/94‑1 (MQ=60)
CCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGAC > SRR4302533.469221/1‑94 (MQ=60)
CGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACA > SRR4302533.2359109/1‑94 (MQ=60)
GTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAA < SRR4302533.2346665/94‑1 (MQ=60)
GTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAAAGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAA > SRR4302533.3632529/1‑94 (MQ=60)
TAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAA < SRR4302533.6058497/94‑1 (MQ=60)
AACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAAT < SRR4302533.4550859/94‑1 (MQ=60)
CACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATAC < SRR4302533.2690548/94‑1 (MQ=60)
ACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACC > SRR4302533.5089489/1‑94 (MQ=60)
CGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCC > SRR4302533.1249020/1‑94 (MQ=60)
CGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCC < SRR4302533.3512277/94‑1 (MQ=60)
GCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGTCAGCGGCCTTCGACAAATACCCG > SRR4302533.2793193/1‑94 (MQ=60)
CTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGT > SRR4302533.5914368/1‑94 (MQ=60)
CTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGT < SRR4302533.3065617/94‑1 (MQ=60)
CTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGT < SRR4302533.228416/94‑1 (MQ=60)
TTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTG < SRR4302533.1330346/94‑1 (MQ=60)
TGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGC > SRR4302533.6342499/1‑94 (MQ=60)
TGCCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGC < SRR4302533.659361/94‑1 (MQ=60)
CCGCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGT > SRR4302533.528886/1‑94 (MQ=60)
GCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCT > SRR4302533.2066275/1‑94 (MQ=60)
GCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCT < SRR4302533.1022551/94‑1 (MQ=60)
GCTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCT < SRR4302533.24164/94‑1 (MQ=60)
CTGGTAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTG < SRR4302533.4218362/94‑1 (MQ=60)
TAACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGC < SRR4302533.6239986/94‑1 (MQ=60)
ACAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTG < SRR4302533.3463773/94‑1 (MQ=60)
CAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGC > SRR4302533.2194269/1‑94 (MQ=60)
CAAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGC > SRR4302533.6114764/1‑94 (MQ=60)
AAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCT > SRR4302533.2274953/1‑94 (MQ=60)
AAACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCT < SRR4302533.5774210/94‑1 (MQ=60)
AAACATCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCT < SRR4302533.5376473/94‑1 (MQ=60)
AACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTG > SRR4302533.2979911/1‑94 (MQ=60)
AACGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTG > SRR4302533.2002887/1‑94 (MQ=60)
CGTCCCAGCAGCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGAT < SRR4302533.4227779/94‑1 (MQ=60)
CGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGAT > SRR4302533.1958915/1‑94 (MQ=60)
CGTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGAT < SRR4302533.5586917/94‑1 (MQ=60)
GTCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGATA > SRR4302533.942151/1‑94 (MQ=60)
TCCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGATAC < SRR4302533.1871455/94‑1 (MQ=60)
CCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGATACT < SRR4302533.2102391/94‑1 (MQ=60)
CCCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGATACT > SRR4302533.1966959/1‑94 (MQ=60)
CCAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGATACTA > SRR4302533.4662358/1‑94 (MQ=60)
CAGCACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGATACTAC < SRR4302533.2045060/94‑1 (MQ=60)
CACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGATACTACTTC < SRR4302533.5330126/94‑1 (MQ=60)
CACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGATACTACTTC < SRR4302533.5766442/94‑1 (MQ=60)
CACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGATACTACTTC > SRR4302533.1903834/1‑94 (MQ=60)
CACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGATACTACTTC < SRR4302533.824962/94‑1 (MQ=60)
ACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGATACTACTTCG > SRR4302533.1037763/1‑94 (MQ=60)
ACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGATACTACTTCG > SRR4302533.3255783/1‑94 (MQ=60)
ACCTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGATACTACTTCG > SRR4302533.1124157/1‑94 (MQ=60)
CTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGATACTACTTCGCC > SRR4302533.5920281/1‑94 (MQ=60)
CTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGATACTACTTCGCC > SRR4302533.43577/1‑94 (MQ=60)
CTAAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGATACTACTTCGCC < SRR4302533.3428428/94‑1 (MQ=60)
AAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGATACTACTTCGCCAA > SRR4302533.4873348/1‑94 (MQ=60)
AAATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGATACTACTTCGCCAA > SRR4302533.4866212/1‑94 (MQ=60)
AATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGATACTACTTCGCCAAA > SRR4302533.3642149/1‑94 (MQ=60)
AATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGATACTACTTCGCCAAA > SRR4302533.1038305/1‑94 (MQ=60)
ATGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGATACTACTTCGCCAAAC > SRR4302533.5465899/1‑94 (MQ=60)
TGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGATACTACTTCGCCAAACA < SRR4302533.6253274/94‑1 (MQ=60)
TGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGATACTACTTCGCCAAACA > SRR4302533.3417651/1‑94 (MQ=60)
TGACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGATACTACTTCGCCAAACA > SRR4302533.972215/1‑94 (MQ=60)
GACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGATACTACTTCGCCAAACAG < SRR4302533.2314638/94‑1 (MQ=60)
GACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGATACTACTTCGCCAAACAG < SRR4302533.2212134/94‑1 (MQ=60)
ACGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGATACTACTTCGCCAAACAGC < SRR4302533.503110/94‑1 (MQ=60)
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GAGGCTTTGATAAAGAAACCTGGTTATAGCATGAATGCTTAACCCGCCGTAACACGCTTGCCGCTGGTAACAAACGTCCCAGCACCTAAATGATGCAACGTATTGAGCTTATCATCATCAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGATACTACTTCGCCAAACAGC > NC_000913/1531268‑1531453
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
