Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,587,161 T→C I289V (ATT→GTT)  b1505 ← putative outer membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,587,1610TC100.0% 762.5 / NA 233I289V (ATT→GTT) b1505putative outer membrane protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (106/127);  total (106/127)

Only 100 of 235 total aligned reads displayed.

CAATTGCACCGAATGGAACGCTCTTATTACCGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAATAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGAATTCGCGTTAAGAGCAACACGGTTTT  >  NC_000913/1587071‑1587250
                                                                                          |                                                                                         
cAATTGCACCGAATGGAACGCTCTTATTCCCGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAg                                                                                         <  1:6304987/93‑1 (MQ=255)
 aaTTGCACCGAATGGAACGCTCTTATTACCGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGc                                                                                        >  2:450616/1‑93 (MQ=255)
 aaTTGCACCGAATGGAACGCTCTTATTACCGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGc                                                                                        >  2:1343706/1‑93 (MQ=255)
  aTTGCACCGAATGGAACGCTCTTATTACCGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCa                                                                                       >  2:4691288/1‑93 (MQ=255)
   ttGCACCGAATGGAACGCTCTTATTACCGTACTTCAACGTCATTAATACTTCCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCAc                                                                                      <  1:6192560/93‑1 (MQ=255)
     gCACCGAATGGAACGCTCTTATTACCGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCg                                                                                    >  2:5787090/1‑93 (MQ=255)
      cACCGAATGGAACGCTCTTATTACCGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGt                                                                                   >  2:1117665/1‑93 (MQ=255)
      cACCGAATGCAGCGCTCTTATTACCGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGt                                                                                   <  2:6046354/93‑1 (MQ=255)
       aCCGAATGAAACGCTCTTATTACCGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTg                                                                                  <  2:4593715/93‑1 (MQ=255)
         cGAATGGACCGCTCTTATTACCGTACTTCAACGTCATTAATCCTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAg                                                                                <  2:216575/93‑1 (MQ=255)
         cGAATGGAACGCTCTTATTACCGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAg                                                                                >  2:921584/1‑93 (MQ=255)
          gAATGGAACGCTCTTATTACCGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGt                                                                               >  1:272695/1‑93 (MQ=255)
           aaTGGAACGCTCTTATTACCGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGtt                                                                              >  1:1341964/1‑93 (MQ=255)
            aTGGAACGCTCTTATTACCGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTg                                                                             <  2:2020300/93‑1 (MQ=255)
            aTGGAACGCTCTTATTACCGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTg                                                                             <  1:5609893/93‑1 (MQ=255)
                aaCGCTCTTATTACCGTACTTCAACGTCATTAATCCTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGAt                                                                         <  2:1435713/93‑1 (MQ=255)
                aaCGCTCTTATTACCGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGAt                                                                         <  1:5047913/93‑1 (MQ=255)
                   gCTCTTATTACCGTACTTCAACGTCATTAATACTTACCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGAc                                                                      <  1:4078557/93‑1 (MQ=255)
                   cctctTATTCCCGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGAc                                                                      <  2:441857/92‑1 (MQ=255)
                   cctctTATTACCGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGAc                                                                      <  2:4805531/92‑1 (MQ=255)
                    ctctTATTACCGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACa                                                                     <  2:1518697/93‑1 (MQ=255)
                     tctTATTACCGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAg                                                                    >  2:230224/1‑93 (MQ=255)
                     tctTATTACCGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAg                                                                    >  2:4898979/1‑93 (MQ=255)
                     tctTATTACCGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAg                                                                    <  1:4504796/93‑1 (MQ=255)
                      ctTATTACCGTACTTCAACGTCCTTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCACCAGCACCGTGAGCTGGGATGACAGt                                                                   >  1:3698873/1‑93 (MQ=255)
                      ctTATTACCGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGt                                                                   >  2:5891433/1‑93 (MQ=255)
                       ttattaCCGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTg                                                                  >  1:5679650/1‑93 (MQ=255)
                         attaCCGTACTTCAACGTCATTAATACTTCCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGAc                                                                <  1:5945703/93‑1 (MQ=255)
                           taacGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCa                                                              >  1:4584698/4‑93 (MQ=255)
                           taCCGTACTTCACCGTCATTAATGCTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCa                                                              <  1:2505882/93‑1 (MQ=255)
                           taCCGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCa                                                              >  2:3406427/1‑93 (MQ=255)
                            aCCGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCAc                                                             >  1:1304995/1‑93 (MQ=255)
                            aCCGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCAc                                                             >  1:4546622/1‑93 (MQ=255)
                            aCCGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCAc                                                             >  1:4968116/1‑93 (MQ=255)
                             ccGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACg                                                            <  1:476077/93‑1 (MQ=255)
                             ccGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACg                                                            >  1:1856198/1‑93 (MQ=255)
                             ccGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACg                                                            <  1:4252130/93‑1 (MQ=255)
                             ccGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACg                                                            >  2:2884550/1‑93 (MQ=255)
                              cGTACTTCAACGTCATTAATACTTCCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACgg                                                           <  1:299938/93‑1 (MQ=255)
                               gTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGt                                                          >  1:5450804/1‑93 (MQ=255)
                                 aCTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGttt                                                        <  1:3593028/93‑1 (MQ=255)
                                  cTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTc                                                       <  1:3815803/93‑1 (MQ=255)
                                     cAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATc                                                    <  2:2803951/93‑1 (MQ=255)
                                      aaCGTCATTAATACTTCCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATcc                                                   <  2:4251521/93‑1 (MQ=255)
                                       aCGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCa                                                  >  1:3187608/1‑93 (MQ=255)
                                         gTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTTACCACGGTTTCATCCAGt                                                <  2:302389/93‑1 (MQ=255)
                                         gTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGt                                                >  2:1286762/1‑93 (MQ=255)
                                          tCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGtt                                               >  2:5672422/1‑93 (MQ=255)
                                           cATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTc                                              >  1:1513169/1‑93 (MQ=255)
                                           aaTTAATCCTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTc                                              <  2:4133128/92‑1 (MQ=255)
                                            aTTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCa                                             <  1:5935067/93‑1 (MQ=255)
                                             ttAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCaa                                            >  1:3430602/1‑93 (MQ=255)
                                                aTACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACAt                                         >  2:6244042/1‑93 (MQ=255)
                                                 tACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACAtt                                        >  1:605078/1‑93 (MQ=255)
                                                  aCTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTa                                       <  1:2105557/93‑1 (MQ=255)
                                                    tttCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATc                                     >  2:1139622/1‑93 (MQ=255)
                                                     ttCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCt                                    >  2:122636/1‑93 (MQ=255)
                                                     ttCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCt                                    <  2:1772824/93‑1 (MQ=255)
                                                     ttCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCt                                    >  2:5092598/1‑93 (MQ=255)
                                                     tccccGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCt                                    <  2:4562335/91‑1 (MQ=255)
                                                      tCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTg                                   >  1:2815596/1‑93 (MQ=255)
                                                       cccGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGc                                  <  1:265881/93‑1 (MQ=255)
                                                        ccgccgATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACCTTATCTGCa                                 >  2:774907/1‑93 (MQ=255)
                                                        ccgccgATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCa                                 >  2:2419807/1‑93 (MQ=255)
                                                         cgccgATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCaa                                <  2:192212/93‑1 (MQ=255)
                                                         cgccgATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCaa                                >  1:3381149/1‑93 (MQ=255)
                                                         cgacgATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCaa                                <  2:3502844/90‑1 (MQ=255)
                                                          gccgATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAg                               <  2:2771259/93‑1 (MQ=255)
                                                           ccgATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAgg                              <  1:4172219/93‑1 (MQ=255)
                                                           ccgATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAgg                              >  1:2238976/1‑93 (MQ=255)
                                                            cgATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAggg                             >  1:5173170/1‑93 (MQ=255)
                                                            cgATTTGTGCATTAAATGTTGCTCTGGCAACAGCAACGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAggg                             >  1:6116207/1‑93 (MQ=255)
                                                             gATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGa                            >  1:1751228/1‑93 (MQ=255)
                                                             gATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGa                            >  2:2852711/1‑93 (MQ=255)
                                                             gATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGa                            >  2:1615666/1‑93 (MQ=255)
                                                             gATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGa                            >  2:2491961/1‑93 (MQ=255)
                                                              aTTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGaa                           >  1:5379942/1‑93 (MQ=255)
                                                                ttGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGAAtt                         >  1:1364230/1‑93 (MQ=255)
                                                                 tgtgCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGAATTc                        >  2:5274575/1‑93 (MQ=255)
                                                                   tgCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGAATTcgc                      <  1:1215392/93‑1 (MQ=255)
                                                                   tgCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGAATTcgc                      <  1:1009682/93‑1 (MQ=255)
                                                                   tgCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGAATTcgc                      <  2:263878/93‑1 (MQ=255)
                                                                    gCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGAATTcgcg                     >  1:903331/1‑93 (MQ=255)
                                                                     cATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGAATTCGCGt                    >  2:3946858/1‑93 (MQ=255)
                                                                      aTTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGAATTCGCGtt                   <  1:4032147/93‑1 (MQ=255)
                                                                       ttAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGAATTCGCGTTa                  >  1:3262332/1‑93 (MQ=255)
                                                                          aaTGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGAATTCGCGTTAaga               <  2:375990/93‑1 (MQ=255)
                                                                           aTGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGAATTCGCGTTAagag              <  1:4367058/93‑1 (MQ=255)
                                                                             gTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGAATTCGCGTTAAGAGCa            >  2:3900345/1‑93 (MQ=255)
                                                                                gCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGAATTCGCGTTAAGAGCAaca         <  1:2569080/93‑1 (MQ=255)
                                                                                gCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGAATTCGCGTTAAGAGCAaca         >  1:3615958/1‑93 (MQ=255)
                                                                                gCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGAATTCGCGTTAAGAGCAaca         >  1:929585/1‑93 (MQ=255)
                                                                                  tctGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGAATTCGCGTTAAGAGCAACACg       <  2:6188240/93‑1 (MQ=255)
                                                                                    tGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGAATTCGCGTTAAGAGCAACACGGt     <  2:139836/93‑1 (MQ=255)
                                                                                    tGGAAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGAATTCGCGTTAAGAGCAACACGGt     <  2:1039221/93‑1 (MQ=255)
                                                                                     ggCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGAATTCGCGTTAAGAGCAACACGGtt    <  1:5812700/93‑1 (MQ=255)
                                                                                     ggCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGAATTCGCGTTAAGAGCAACACGGtt    <  2:3817836/93‑1 (MQ=255)
                                                                                     ggCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGAATTCGCGTTAAGAGCAACACGGtt    <  2:4320902/93‑1 (MQ=255)
                                                                                      gCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGAATTCGCGTTAAGAGCAACACGGttt   <  2:3255141/93‑1 (MQ=255)
                                                                                       cAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGAATTCGCGTTAAGAGCAACACGGtttt  <  2:5379516/93‑1 (MQ=255)
                                                                                          |                                                                                         
CAATTGCACCGAATGGAACGCTCTTATTACCGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAATAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGAATTCGCGTTAAGAGCAACACGGTTTT  >  NC_000913/1587071‑1587250

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TGACAATTGCACCGAATGGAACGCTCTTATTACCGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAATAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGAATTCGCGTTAAGAGCAACACGGTTTTCTCT  >  NC_000913/1587068‑1587254
                                                                                             |                                                                                             
TGACAATTGCACCGAATGGAACGCTCTTATTACCGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAAC                                                                                               >  SRR4302533.4981695/1‑94 (MQ=60)
 GACAATTGCACCGAATGGAACGCTCTTATTACCGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACA                                                                                              <  SRR4302533.48449/94‑1 (MQ=60)
 GACAATTGCACCGAATGGAACGCTCTTATTACCGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACA                                                                                              <  SRR4302533.6263212/94‑1 (MQ=60)
  ACAATTGCACCGAATGGAACGCTCTTATTACCGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAG                                                                                             <  SRR4302533.80882/94‑1 (MQ=60)
  ACAATTGCACCGAATGGAACGCTCTTATTACCGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAG                                                                                             <  SRR4302533.335489/94‑1 (MQ=60)
   CAATTGCACCGAATGGAACGCTCTTATTCCCGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGC                                                                                            <  SRR4302533.6342707/94‑1 (MQ=60)
   AAATTGCACCGAATGGAACGCTCTTATTACCGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGC                                                                                            <  SRR4302533.4781864/94‑1 (MQ=60)
    AATTGCACCGAATGGACCGCTCTTATTACCGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCA                                                                                           <  SRR4302533.5342485/94‑1 (MQ=60)
    AATTGCACCGAATGGAACGCTCTTATTACCGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCA                                                                                           <  SRR4302533.2828264/94‑1 (MQ=60)
      tgccccgaaagggacccctttttttccgttccttcaccttaataaatctttcCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACC                                                                                         <  SRR4302533.1588690/42‑1 (MQ=60)
      TTGCACCGAATGGAACGCTCTTATTACCGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACC                                                                                         <  SRR4302533.3200313/94‑1 (MQ=60)
      TTGCACCGAATGGAACGCTCTTATTACCGTACTTCAACGTCATTAATACTTCCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACC                                                                                         <  SRR4302533.6229721/94‑1 (MQ=60)
        GCACGGAAGGCAACGCTCTTATTACCGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGT                                                                                       <  SRR4302533.5972751/94‑1 (MQ=60)
        GCACCGAATGGAACGCTCTTATTACCGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGT                                                                                       <  SRR4302533.4454364/94‑1 (MQ=60)
         CACCGAATGGAACGCTCTTATTACCGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTG                                                                                      <  SRR4302533.6315805/94‑1 (MQ=60)
           CCGAATGGAACGCTCTTATTACCGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAG                                                                                    <  SRR4302533.5663401/94‑1 (MQ=60)
            CGAATGGAACGCTCTTATTACCGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGT                                                                                   >  SRR4302533.274354/1‑94 (MQ=60)
            CGAATGGAACGCTCTTATTACCGCACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGT                                                                                   >  SRR4302533.2277896/1‑94 (MQ=60)
             GAATGGAACGCTCTTATTACCGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTT                                                                                  >  SRR4302533.1350044/1‑94 (MQ=60)
             GAATGGAACGCTCTTATTACCGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTT                                                                                  >  SRR4302533.2173399/1‑94 (MQ=60)
             GAATGAAACGCTCTTATTACCGTACTTCAACGTCATTAATCCTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTT                                                                                  <  SRR4302533.5435935/94‑1 (MQ=60)
              AATGGAACGCTCTTATTACCGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTG                                                                                 <  SRR4302533.2732899/94‑1 (MQ=60)
               ATGGAACGCTCTTATTACCGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGG                                                                                <  SRR4302533.5643795/94‑1 (MQ=60)
               ATGGAACGCTCTTATTACCGTACTACAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGG                                                                                <  SRR4302533.5104392/94‑1 (MQ=60)
                TGGAACGCTCTTATTACCGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGG                                                                               >  SRR4302533.516776/1‑94 (MQ=60)
                   AACGCTCTTATTACCGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATG                                                                            <  SRR4302533.5078449/94‑1 (MQ=60)
                    ACGCTCTTATTCCCGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGA                                                                           <  SRR4302533.2546348/94‑1 (MQ=60)
                    ACGCTCTTATTACCGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGA                                                                           <  SRR4302533.5879138/94‑1 (MQ=60)
                      GCTCTTATTACCGTACTTCAACGTCATTAATACTTACCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACA                                                                         <  SRR4302533.4103385/94‑1 (MQ=60)
                        TCTTATTACCGTACTTCAACGTCCTTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCACCAGCACCGTGAGCTGGGATGACAGT                                                                       >  SRR4302533.3721590/1‑94 (MQ=60)
                        TCTTATTACCGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGT                                                                       <  SRR4302533.4532085/94‑1 (MQ=60)
                        TCTTATTACCGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGT                                                                       >  SRR4302533.2600100/1‑94 (MQ=60)
                        TCTTATTACCGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGT                                                                       <  SRR4302533.4195182/94‑1 (MQ=60)
                         TTTATTCCCGTACTTCAACGTCATTAATACTTCCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTG                                                                      <  SRR4302533.3251045/94‑1 (MQ=60)
                         CTTATTCCCGTACTTCAACGTCATTAATACTTGCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTG                                                                      <  SRR4302533.5985814/94‑1 (MQ=60)
                         CTTATTACCGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTG                                                                      >  SRR4302533.954692/1‑94 (MQ=60)
                         CTTATTACCGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTG                                                                      >  SRR4302533.4550604/1‑94 (MQ=60)
                         CTTATTACCGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTG                                                                      >  SRR4302533.5713952/1‑94 (MQ=60)
                         CTTATTACCGTACTTCAACGTCATTAATACTTTCCCCCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTG                                                                      <  SRR4302533.1785861/94‑1 (MQ=60)
                         CTTATTACCGTACTTCAACGTCATTAATACTTCCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTG                                                                      <  SRR4302533.3545103/94‑1 (MQ=60)
                          TTATTACGGTCCTTCACCGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGA                                                                     <  SRR4302533.1340511/94‑1 (MQ=60)
                            ATTACCGTACTTCAACGTCATTAATACTTCCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACC                                                                   <  SRR4302533.5981659/94‑1 (MQ=60)
                             TTAACGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCA                                                                  >  SRR4302533.4612469/1‑94 (MQ=60)
                              TACCGTACTTCACCGTCATTAATGCTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCAC                                                                 <  SRR4302533.2521333/94‑1 (MQ=60)
                              TACCGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCAC                                                                 >  SRR4302533.1312839/1‑94 (MQ=60)
                              TACCGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCAC                                                                 >  SRR4302533.4998238/1‑94 (MQ=60)
                              TACCGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCAC                                                                 >  SRR4302533.4574156/1‑94 (MQ=60)
                               ACCGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACG                                                                <  SRR4302533.3422163/94‑1 (MQ=60)
                               ACCGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACG                                                                >  SRR4302533.1867520/1‑94 (MQ=60)
                                cccttacttcaccttattaaatCTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGG                                                               <  SRR4302533.1241984/72‑1 (MQ=60)
                                CCGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGG                                                               <  SRR4302533.478918/94‑1 (MQ=60)
                                CCGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGG                                                               <  SRR4302533.4277778/94‑1 (MQ=60)
                                 CGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGT                                                              >  SRR4302533.5483641/1‑94 (MQ=60)
                                 CGTACTTCAACGTCATTAATACTTCCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGT                                                              <  SRR4302533.301773/94‑1 (MQ=60)
                                    ACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTC                                                           <  SRR4302533.3615140/94‑1 (MQ=60)
                                     CTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCA                                                          <  SRR4302533.3839135/94‑1 (MQ=60)
                                        CAACTTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCC                                                       <  SRR4302533.3358541/94‑1 (MQ=60)
                                        CAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGCGACCACGGTTTCATCC                                                       <  SRR4302533.4496599/94‑1 (MQ=60)
                                         AACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCA                                                      >  SRR4302533.3207217/1‑94 (MQ=60)
                                          ACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAG                                                     >  SRR4302533.93797/1‑94 (MQ=60)
                                            GTCATTAATCCTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTT                                                   <  SRR4302533.2036923/94‑1 (MQ=60)
                                            GTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTT                                                   >  SRR4302533.4657898/1‑94 (MQ=60)
                                            GTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTT                                                   <  SRR4302533.2962680/94‑1 (MQ=60)
                                            GTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCGGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTT                                                   >  SRR4302533.3398174/1‑94 (MQ=60)
                                             TCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTC                                                  <  SRR4302533.1382484/94‑1 (MQ=60)
                                             TCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTC                                                  <  SRR4302533.4095389/94‑1 (MQ=60)
                                             TCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTC                                                  >  SRR4302533.1522285/1‑94 (MQ=60)
                                              CATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCA                                                 >  SRR4302533.5499626/1‑94 (MQ=60)
                                              CATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCA                                                 >  SRR4302533.1246016/1‑94 (MQ=60)
                                               ATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAA                                                >  SRR4302533.3451795/1‑94 (MQ=60)
                                               ATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAA                                                <  SRR4302533.5970948/94‑1 (MQ=60)
                                                TTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAAC                                               <  SRR4302533.3469722/94‑1 (MQ=60)
                                                 TAATACTTCCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACA                                              <  SRR4302533.5725437/94‑1 (MQ=60)
                                                   ATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATT                                            >  SRR4302533.608634/1‑94 (MQ=60)
                                                     ACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTAT                                          <  SRR4302533.2118541/94‑1 (MQ=60)
                                                      CTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATC                                         <  SRR4302533.1683833/94‑1 (MQ=60)
                                                      CTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATC                                         >  SRR4302533.3793803/1‑94 (MQ=60)
                                                        TTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTG                                       >  SRR4302533.2832931/1‑94 (MQ=60)
                                                        TTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTG                                       <  SRR4302533.1578209/94‑1 (MQ=60)
                                                          CCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCA                                     <  SRR4302533.267500/94‑1 (MQ=60)
                                                          CCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCA                                     <  SRR4302533.6268335/94‑1 (MQ=60)
                                                           CCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAA                                    >  SRR4302533.2186455/1‑94 (MQ=60)
                                                           CCGCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAA                                    >  SRR4302533.3402019/1‑94 (MQ=60)
                                                             GCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGG                                  <  SRR4302533.4327855/94‑1 (MQ=60)
                                                             GCCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGG                                  >  SRR4302533.2252811/1‑94 (MQ=60)
                                                              CCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGG                                 >  SRR4302533.5204391/1‑94 (MQ=60)
                                                              CCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGG                                 <  SRR4302533.2664390/94‑1 (MQ=60)
                                                              CCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGG                                 <  SRR4302533.4197501/94‑1 (MQ=60)
                                                              CCGATTTGTGCATTAAATGTTGCTCTGGCAACAGCAACGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGG                                 >  SRR4302533.6153105/1‑94 (MQ=60)
                                                               CGATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGA                                >  SRR4302533.1761891/1‑94 (MQ=60)
                                                                GATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGAA                               >  SRR4302533.5412265/1‑94 (MQ=60)
                                                                GATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGAA                               >  SRR4302533.4917708/1‑94 (MQ=60)
                                                                 ATTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGAAT                              <  SRR4302533.381700/94‑1 (MQ=60)
                                                                  TTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGAATT                             >  SRR4302533.1372425/1‑94 (MQ=60)
                                                                  TTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGAATT                             >  SRR4302533.1327345/1‑94 (MQ=60)
                                                                  TTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGAATT                             <  SRR4302533.920904/94‑1 (MQ=60)
                                                                  TTTGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGAATT                             <  SRR4302533.290498/94‑1 (MQ=60)
                                                                    TGTGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGAATTCG                           >  SRR4302533.4607924/1‑94 (MQ=60)
                                                                     GTGCACTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGAATTCGC                          >  SRR4302533.712920/1‑94 (MQ=60)
                                                                      TGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGAATTCGCG                         <  SRR4302533.1015587/94‑1 (MQ=60)
                                                                      TGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGAATTCGCG                         >  SRR4302533.908628/1‑94 (MQ=60)
                                                                      TGCATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGAATTCGCG                         <  SRR4302533.1222690/94‑1 (MQ=60)
                                                                        CATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGAATTCGCGTT                       >  SRR4302533.6045435/1‑94 (MQ=60)
                                                                        CATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGAATTCGCGTT                       <  SRR4302533.4052657/94‑1 (MQ=60)
                                                                         ATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGAATTCGCGTTA                      >  SRR4302533.3282460/1‑94 (MQ=60)
                                                                         ATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGAATTCGCGTTA                      <  SRR4302533.4056693/94‑1 (MQ=60)
                                                                         ATTAAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGAATTCGCGTTA                      <  SRR4302533.4143210/94‑1 (MQ=60)
                                                                            AAATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGAATTCGCGTTAAGA                   <  SRR4302533.4215465/94‑1 (MQ=60)
                                                                             AATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACTGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGAATTATGGTTAAGAG                  >  SRR4302533.608804/1‑94 (MQ=60)
                                                                              ATGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGAATTCGCGTTAAGAGC                 <  SRR4302533.4393423/94‑1 (MQ=60)
                                                                               TGTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGAATTCGCGTTAAGAGCA                >  SRR4302533.5015793/1‑94 (MQ=60)
                                                                                GTTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGAATTCGCGTTAAGAGCAA               >  SRR4302533.572691/1‑94 (MQ=60)
                                                                                 TTGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGAATTCGCGTTAAGAGCAAC              <  SRR4302533.6225747/94‑1 (MQ=60)
                                                                                  TGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGAATTCGCGTTAAGAGCAACA             >  SRR4302533.3638203/1‑94 (MQ=60)
                                                                                  TGCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGAATTCGCGTTAAGAGCAACA             >  SRR4302533.935043/1‑94 (MQ=60)
                                                                                   GCTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGAATTCGCGTTAAGAGCAACAC            <  SRR4302533.2584889/94‑1 (MQ=60)
                                                                                    CTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGAATTCGCGTTAAGAGCAACACG           <  SRR4302533.1351792/94‑1 (MQ=60)
                                                                                    CTCTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGAATTCGCGTTAAGAGCAACACG           <  SRR4302533.1102098/94‑1 (MQ=60)
                                                                                      CTGGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGAATTCGCGTTAAGAGCAACACGGT         >  SRR4302533.3629269/1‑94 (MQ=60)
                                                                                        GGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGAATTCGCGTTAAGAGCAACACGGTTT       <  SRR4302533.5847806/94‑1 (MQ=60)
                                                                                        GGCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGAATTCGCGTTAAGAGCAACACGGTTT       <  SRR4302533.3641138/94‑1 (MQ=60)
                                                                                         GCAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGAATTCGCGTTAAGAGCAACACGGTTTT      >  SRR4302533.549103/1‑94 (MQ=60)
                                                                                          CAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGAATTCGCGTTAAGAGCAACACGGTTTTC     >  SRR4302533.2246430/1‑94 (MQ=60)
                                                                                          CAACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGAATTCGCGTTAAGAGCAACACGGTTTTC     >  SRR4302533.823835/1‑94 (MQ=60)
                                                                                           AACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGAATTCGCGTTAAGAGCAACACGGTTTTCT    <  SRR4302533.4591234/94‑1 (MQ=60)
                                                                                            ACAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGAATTCGCGTTAAGAGCAACACGGTTTTCTC   >  SRR4302533.5849761/1‑94 (MQ=60)
                                                                                             CAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGAATTCGCGTTAAGAGCAACACGGTTTTCTCT  <  SRR4302533.1658217/94‑1 (MQ=60)
                                                                                             CAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGAATTCGCGTTAAGAGCAACACGGTTTTCTCT  <  SRR4302533.1736269/94‑1 (MQ=60)
                                                                                             CAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGAATTCGCGTTAAGAGCAACACGGTTTTCTCT  <  SRR4302533.152217/94‑1 (MQ=60)
                                                                                             CAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGAATTCGCGTTAAGAGCAACACGGTTTTCTCT  <  SRR4302533.4663015/94‑1 (MQ=60)
                                                                                             CAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGAATTCGCGTTAAGAGCAACACGGTTTTCTCT  >  SRR4302533.5951918/1‑94 (MQ=60)
                                                                                             CAGCACCGTGAGTTGGGATGACAGTGAACACGGTTTCATCCAGTTCAACATTATCTGCAAGGGAATTCGCGTTAAGAGCAACACGGTTTTCTCT  <  SRR4302533.3500417/94‑1 (MQ=60)
                                                                                             |                                                                                             
TGACAATTGCACCGAATGGAACGCTCTTATTACCGTACTTCAACGTCATTAATACTTTCCCGCCGATTTGTGCATTAAATGTTGCTCTGGCAATAGCACCGTGAGTTGGGATGACAGTGACCACGGTTTCATCCAGTTCAACATTATCTGCAAGGGAATTCGCGTTAAGAGCAACACGGTTTTCTCT  >  NC_000913/1587068‑1587254

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑